MELO3C001345.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C001345.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Threonine synthase
Location	chr11: 21589638 .. 21589850 (+)
Sequence length	213
RNA-Seq Expression	MELO3C001345.1
Synteny	MELO3C001345.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGTCCCTTTTAACGCTGGGCCCGACTCCATTGAGTGCTACTCTCTCGACGAGATCGTTTACCGAAGCCGATCTGGTGGGTTACTCGACATTCAATACGACATGAAGGCATTGAAGAAATATGACGGCGCCTATTGGCGAAACCTCTTCGATTCGCGCGTGGGGAAAACTACGTGGCCTTATGGTTCCGGCGTTTGGAGTAAGAAGGAATGG

mRNA sequence

TACGTCCCTTTTAACGCTGGGCCCGACTCCATTGAGTGCTACTCTCTCGACGAGATCGTTTACCGAAGCCGATCTGGTGGGTTACTCGACATTCAATACGACATGAAGGCATTGAAGAAATATGACGGCGCCTATTGGCGAAACCTCTTCGATTCGCGCGTGGGGAAAACTACGTGGCCTTATGGTTCCGGCGTTTGGAGTAAGAAGGAATGG

Coding sequence (CDS)

TACGTCCCTTTTAACGCTGGGCCCGACTCCATTGAGTGCTACTCTCTCGACGAGATCGTTTACCGAAGCCGATCTGGTGGGTTACTCGACATTCAATACGACATGAAGGCATTGAAGAAATATGACGGCGCCTATTGGCGAAACCTCTTCGATTCGCGCGTGGGGAAAACTACGTGGCCTTATGGTTCCGGCGTTTGGAGTAAGAAGGAATGG

Protein sequence

YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWPYGSGVWSKKEW

Homology

[Close]

BLAST of MELO3C001345.1 vs. ExPASy Swiss-Prot
Match: Q9MT28 (Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-32
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGP+S E YSLDEIVYRSRSGGLLD+Q+DM ALKK+DG YWR+LFDSRVGKTTWP
Sbjct: 76  YVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWP 135

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 136 YGSGVWSKKEW 146

[Close]

BLAST of MELO3C001345.1 vs. ExPASy Swiss-Prot
Match: Q9S7B5 (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-31
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNA P S E YSLDEIVYRSRSGGLLD+++DM+ALK++DGAYWR+LFDSRVGK+TWP
Sbjct: 83  YVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWP 142

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 143 YGSGVWSKKEW 153

[Close]

BLAST of MELO3C001345.1 vs. ExPASy Swiss-Prot
Match: Q9SSP5 (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-30
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNA P S E YSLDEIVYRS+SG LLD+Q+D  ALK+YDG +WRNLFDSRVGKT WP
Sbjct: 74  YVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWP 133

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 134 YGSGVWSKKEW 144

[Close]

BLAST of MELO3C001345.1 vs. NCBI nr
Match: KAA0054405.1 (Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily [Cucumis melo var. makuwa] >TYJ96832.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 195 YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 254

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 255 YGSGVWSKKEW 265

[Close]

BLAST of MELO3C001345.1 vs. NCBI nr
Match: XP_011660008.1 (threonine synthase, chloroplastic [Cucumis sativus] >KGN66271.1 hypothetical protein Csa_006965 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 7.9e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. NCBI nr
Match: TYK10051.1 (threonine synthase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 7.9e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. NCBI nr
Match: TYK27135.1 (threonine synthase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 7.9e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. NCBI nr
Match: KAA0057146.1 (threonine synthase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 7.9e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. ExPASy TrEMBL
Match: A0A5A7UL45 (Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00290 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.1e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 195 YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 254

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 255 YGSGVWSKKEW 265

[Close]

BLAST of MELO3C001345.1 vs. ExPASy TrEMBL
Match: A0A5A7UJB3 (Pyridoxal-5'-phosphate-dependent enzyme family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001880 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. ExPASy TrEMBL
Match: A0A5A7UKY2 (Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001890 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. ExPASy TrEMBL
Match: A0A5D3CDZ3 (Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001840 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. ExPASy TrEMBL
Match: A0A5A7USK5 (Threonine synthase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00070 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNAGPDS ECYSLDEIVYRSRSGGLLDIQ+DM+ALKKYDGAYWRNLFDSRVGKTTWP
Sbjct: 87  YVPFNAGPDSTECYSLDEIVYRSRSGGLLDIQHDMEALKKYDGAYWRNLFDSRVGKTTWP 146

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 147 YGSGVWSKKEW 157

[Close]

BLAST of MELO3C001345.1 vs. TAIR 10
Match: AT4G29840.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 136.7 bits (343), Expect = 7.1e-33
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNA P S E YSLDEIVYRSRSGGLLD+++DM+ALK++DGAYWR+LFDSRVGK+TWP
Sbjct: 83  YVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWP 142

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 143 YGSGVWSKKEW 153

[Close]

BLAST of MELO3C001345.1 vs. TAIR 10
Match: AT1G72810.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-31
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   YVPFNAGPDSIECYSLDEIVYRSRSGGLLDIQYDMKALKKYDGAYWRNLFDSRVGKTTWP 60
           YVPFNA P S E YSLDEIVYRS+SG LLD+Q+D  ALK+YDG +WRNLFDSRVGKT WP
Sbjct: 74  YVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWP 133

Query: 61  YGSGVWSKKEW 72
           YGSGVWSKKEW
Sbjct: 134 YGSGVWSKKEW 144

The following BLAST results are available for this feature:

BLAST of MELO3C001345.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MT28	1.2e-32	87.32	Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]
Q9S7B5	1.0e-31	83.10	Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 ...	[more]
Q9SSP5	7.2e-30	80.28	Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 ...	[more]

BLAST of MELO3C001345.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054405.1	1.9e-35	100.00	Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily [Cucumis...	[more]
XP_011660008.1	7.9e-34	95.77	threonine synthase, chloroplastic [Cucumis sativus] >KGN66271.1 hypothetical pro...	[more]
TYK10051.1	7.9e-34	95.77	threonine synthase 1 [Cucumis melo var. makuwa]	[more]
TYK27135.1	7.9e-34	95.77	threonine synthase 1 [Cucumis melo var. makuwa]	[more]
KAA0057146.1	7.9e-34	95.77	threonine synthase 1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C001345.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL45	9.1e-36	100.00	Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily OS=Cucum...	[more]
A0A5A7UJB3	3.8e-34	95.77	Pyridoxal-5'-phosphate-dependent enzyme family protein OS=Cucumis melo var. maku...	[more]
A0A5A7UKY2	3.8e-34	95.77	Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G0...	[more]
A0A5D3CDZ3	3.8e-34	95.77	Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00...	[more]
A0A5A7USK5	3.8e-34	95.77	Threonine synthase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741...	[more]

BLAST of MELO3C001345.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29840.1	7.1e-33	83.10	Pyridoxal-5'-phosphate-dependent enzyme family protein	[more]
AT1G72810.1	5.1e-31	80.28	Pyridoxal-5'-phosphate-dependent enzyme family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	GENE3D	3.40.50.1100		coord: 1..71 e-value: 1.1E-25 score: 92.7
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 14..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C001345	MELO3C001345	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C001345.1:exon:329628	MELO3C001345.1:exon:329628	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C001345.1:cds	MELO3C001345.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C001345.1	MELO3C001345.1-protein	polypeptide