MELO.jh102413.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh102413.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description60S ribosomal protein L36
Locationchr09: 21444486 .. 21449210 (-)
Sequence length489
RNA-Seq ExpressionMELO.jh102413.1.t1
SyntenyMELO.jh102413.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGAGACGTTTGTCTGTCAACAATAACAGTCAATGTTTATCAGTCACCAATGGAGGAGATGACCGGTCATCGAAGGTTAAGACTTGGTTGTCGATGATCAAGACGTTCGGTGGTTGGTCGTCACGGTCAAAACAATTGGCAGTCGATCATCGACTATAAAGACGATTGATCATGAAGTCGACCGATGTTTGTTGTCAACAACAATAGATAAGAGGTAGACAATAATTGAAATTTTTTCCTAGAACCTATTACATTCGGTTTTTCTCAAACTCAATTACTCAAACATGGGTTTGACTTTAAATATTTAAATCCTTAATTTCAAAAGAATGAACCAAACATTCCCTTGTGAAAATATTTAATTTGAACTTGTGACGTGAGAGTTTGAGATATGTGTCTAATAGATTCATGAGTTTTTAAAGATATTTTTTAAGTAGAAAAAATTATTAGCCATCTTTTTAAGGTTAAAAGTAAATAGACACCAACCTAAAGAGTTAAAGGATTAAGTTTCTAATTTAAACTAATTACCTATATACTTGTAACTAATTATAATAGGTATAAAATTTTAGGTGCGTTTGCAAAAATAATAAAAAAATTTATGATAATAAGGCGTTTGTCACTACATTTTCTAAATTGTAAAATAACAAATTTAAAAGTGGGTAGCCCTTTGATAGTCATTTAGTAACGCTCTGATATATATAATTACTTGTAATATTTGCAATATGTAAAAAAAAATGTGCTATATACTGTTTTTTTCTAATTTTTTTTTGTTATCTAACGTAATTTTCCAAAATTGTATTATCAACTAAATTAAATAAAAACTTTGTATATATATATAACAAAAATGGTATATCACATTAGTTTCCTCTTAATGTCCTTGACCACTTGTTAATTATTACATTTTTTTTTTAAAAAAAGGAATTTGTTCACCATGATTGTTTTTCTTAAATCATTATTATTATTGTTATTAGTTATTATGAAATATTATACATATATGGAATATAATAGAAATGGCTTAATATATGGAGAAACTTCCTAAATTTTGTTATTTTTTAATGTGTACTAAAATAGTAACCAACATTAATATCATATTGATGTTGTTTGCTATTTCTATATATAAAAACAAGAATGATAATGAGTGTTACAATTGCACACTATAAATATATGGGGCATGCATGATTAATCACAACAATATTAAGAGTGAGAGATATGCCGACTCATAAGCTTTTTGCAAATAAAGGAGAGAGAGGCTGTATTCCTAAACGACTTGACTCAGAAGAATATATTTGTTGGTGTACTGGTTGATACGTAAAAACCAACAAATCGTCTTCCTAAAAATGAAATGGTGTCATATTCGCTATCTTATCAATGATTATTATTTATTAGTATAATAAATACAGGTTAAAACTTGAAGCAACTATTAATTTCAAGAGAAGAAAGTATACACATGTCAATTATCGAATGAATTATGTTGATGTTGGCTAATCTTATTAATGATCAATGTTTTAGTTATTTTTCTTTTTTTAAGTGAACAGACATTCTTTGTTGTTGGAAATAATTAATGAAAAATATAACGGAGAAGAATAGATAGAAGAAAGAAACAAATTATGAACATACATAGGCTTTACGAACATACATAGGCCTCATTAAATTACTAAAAAAGAAAAATAAAATGACATTGTGTTTGTTACTTTATTAATATAGATGCATAGTGTTCGTTTATTAATTTAAGTTTTTTACTCACTCAAATGTACGTGGAATACAATTGCAATTGTATTCAAAACCTAAACAAGACCGAGAAAAGATAAATCAATCAAAAGATAGTTTATAAATTTGATTATAGTTCAAGAGATTTCATCATTTTACAATGTTAGCATCTATATTATATGATGTTAAAGTGTCGACATAACTAAATTTATAATAATGACCGATTAACTTAATTTTTTGAGACAATTAATAATTAATATTTTTGTTACAATGTAATTAATAAACACTATTAAAATATATTTGGTATCTTTTGAAAAACTATTTTGTTTTAATCACTTTTTTTATTGTTACTTAGATTTAGGTGTGATTCATCGGATAAATGACCCTTATTAATGGATATGAATGGAATTTGACTCACGATTTGAAATTGATTAAAATTTGGCATTTTGTAAATGGAACCACCATATGAAATATTTGATTCAACCCACGAGTGAACCAAGAGTAAACTTAATCTTGCTTCCCAACATTGTTTCTCGCTTTTCGATCTCGTCTTTCGTTCTTGTGAATCTTGTTTTTTCAATTTGTTCATTCATAAAATTTTATTCGATTCTTGATTTTTGACATTGCTTCTCGGCTCTTGTTCTTACCTTCTCAATCTTGCTTCTTGATTCTCGTTTTAGCTTCTCGATCTTGCACCTTAGGTAAAAGAAGAGGGCAGAAGAAAAATTGAAAGGAAGAAAAAACAATGGAGAATAATGCAAGAAAAAAATGAATAAGGGGAAGAGAAAAACAGAAAAAGCAGAAGAAGAGAATCACAAGAAAAATGAAAGAAAAAAAAGTGAAAAACAAAAGAAAAATAAAAATAAAAGGTAAAAATAGAAAAAAAAAAAAAGAAAGAAAAAAACCTAATTCTTTTAATTAATTATGATTTCCATTTAGTTTCCACTACTAATTTTAGAAATTTTCATCGCTTTTTATTTTTCATCAGTTTTATTGTATAAATTTAAAATAAATATTCATATATTATATTTCTTTACATAAAAATTATTTTGATTATTTAAATAATTTCAATAAAATTAATTCTAAGAGACTAAATTTAAGATTTAATAAAAGCAATGGATTAAAATTAAACATTAAAATTGAACCAATTTCAAAATAAGAGAAAAAAAATGATATTTTAACCCTTGATTAATTAATTAATGATTAATAATAATTTTTATAAAAGAGAATTTTGCACGCAATTCAGCCCAAACTGTTGTTCGGCCCATTAACAATTATTGGCATCATATAAATTCACCTCTAAATACTAAACCCTAATTTTACATACCCTAGGTCGTCAGATTCATCGGAACAGGTGAGAATCCGTTGCTTTGGTTAGTTATCAATTTTGCAATCGTTGTTCATTAGTAAGTTCATCTTTGTTAATGGTTTCAGTGATATAGAAAGGGATTTTTTAGGTTAGTTTGTTAGAAACAAATTGAATGATTGTGGACCATTGTGCATTCTGGGATTTCTTCTTCTACTCGGGAATTTTATATCTGCAGCTGTACTTTGAATGTGCTTGGTGAAATAAGTTCGGTTTGGCTGGAAATTTGCTTGGTTAATACTTGATTTAAAGACCCAGTTTTAGTTATAGAGAGTAAACCTCTGGCGATTTATTTTCGTCTTTGCAGTATTAGGGCTTTGCAATTGAACTTCTTTTTGATGGAGTGACTAATTGGGTTTTATTGAAACAGGTAATGGCTCCAAAACAGCCGAATACTGGCCTTTTTGTTGGTCTTAACAAGGGCCACATTGTCACCAAGAAGGAGTTGGCCCCAAGGCCCTCTGATCGTAAAGGAGTAAGACAATCGACATGAAACTAGACATTTTAAAATTTTCATTGATGTTGTTAGTTAGCTTTTTAGGAGATTTAGGAACGAGTTTATGTTACTATATTTTATTAGACCAGTTCTGGACTGTGGTTATTTACTTTTAATATGTTGCTGAAAAAGTCTTGTTAGATTCTCATATATGAGCATGTTTTGTCACAAAATTTTAACTTTGTGTTCTTGTAAAGGAGTAAGTCAATCGACATGAAACTAGACGTTTTAAAATTTTCATTGATGTTGTTAGTTAGCTTTTTAGGAGATTTAGGAACGAGTTTATGTTGCTTTATTTTATTAGACCAGTTCTGGACTTCTGTCGTTACTTTTAATATGTTGCTGAAAAAGTCCTGTTAGATTCTTCATATATGAGCATGTTTTGTCACAAAATTTAACTTTGTGTTCTCATATTGCTGTTTTCATACAAATTAATGTAGAAATCAAGTAAAAGAGTCCTCTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACCCACAAGCGAGCGAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTAAGAAAGATGAGGTAATCCTTCTTCCTTTGTAGAAGGGATAGTCTTCCTGCTTTTATATTTATACTTACGGCCTAAATCATGGTTTGTTTGTGTGGAAAGTCCTAATGTTATATTTAGATCTGCTCCGTGCAAAAGAACAATGGATGTATTAGACGCCAGTTTCAAACTTTGGAGTTAATATTGGTCGAACATTTGTTACACTTGCTTGACTTTGAATATAATTTGAGAACAAAATGCACCTGGCACATTTTTAAAAGAATGTAAATTCTCAAACCCATTGACTCTGAATTATCTTGTGTAAAAATAATGTACATCTTTAGGAAAATGTACATCATAGTAGACATCTTCTTGTTGTGTCAATGTTCTTAGTACTTCATGATCCGTTCTCGCATCTGTTTCTTGTATTTTTATCCGTGATTTTTCAGCTTAGTTGAAATTTGTGAGGAAAGGTACATTCCCATTCATTTCATGACTGGATATATTGTAATTTCAGGGCTGGTGGAGGTGCTGAGAAGAAAAAGTGA

mRNA sequence

ATGATCAAGAGACGTTTGTCTGTCAACAATAACAGTCAATGTTTATCAGTCACCAATGGAGGAGATGACCGGTCATCGAAGGTTAAGACTTGGTTGTCGATGATCAAGACGTTCGGTGGTTGGTCGTCACGGTCGTCAGATTCATCGGAACAGGTAATGGCTCCAAAACAGCCGAATACTGGCCTTTTTGTTGGTCTTAACAAGGGCCACATTGTCACCAAGAAGGAGTTGGCCCCAAGGCCCTCTGATCGTAAAGGAAAATCAAGTAAAAGAGTCCTCTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACCCACAAGCGAGCGAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTAAGAAAGATGAGGGCTGGTGGAGGTGCTGAGAAGAAAAAGTGA

Coding sequence (CDS)

ATGATCAAGAGACGTTTGTCTGTCAACAATAACAGTCAATGTTTATCAGTCACCAATGGAGGAGATGACCGGTCATCGAAGGTTAAGACTTGGTTGTCGATGATCAAGACGTTCGGTGGTTGGTCGTCACGGTCGTCAGATTCATCGGAACAGGTAATGGCTCCAAAACAGCCGAATACTGGCCTTTTTGTTGGTCTTAACAAGGGCCACATTGTCACCAAGAAGGAGTTGGCCCCAAGGCCCTCTGATCGTAAAGGAAAATCAAGTAAAAGAGTCCTCTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAGGACAAGCGTGCTCTGAAGGTAGCCAAAAGAAAGCTTGGAACCCACAAGCGAGCGAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTAAGAAAGATGAGGGCTGGTGGAGGTGCTGAGAAGAAAAAGTGA

Protein sequence

MIKRRLSVNNNSQCLSVTNGGDDRSSKVKTWLSMIKTFGGWSSRSSDSSEQVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Homology
[Close]
BLAST of MELO.jh102413.1.t1 vs. NCBI nr
Match: XP_004140771.1 (60S ribosomal protein L36-2 [Cucumis sativus] >XP_004152381.1 60S ribosomal protein L36-2 [Cucumis sativus] >XP_008436991.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >XP_008439254.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >ADN34294.1 60S ribosomal protein l36e [Cucumis melo subsp. melo] >KAA0033670.1 60S ribosomal protein L36-2-like isoform X2 [Cucumis melo var. makuwa] >KAA0055075.1 60S ribosomal protein L36-2-like isoform X2 [Cucumis melo var. makuwa] >KGN50297.1 hypothetical protein Csa_000263 [Cucumis sativus] >KGN57388.1 hypothetical protein Csa_009903 [Cucumis sativus])

HSP 1 Score: 202 bits (515), Expect = 2.04e-64
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >KAG6605730.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035637.1 60S ribosomal protein L36-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (511), Expect = 8.31e-64
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. NCBI nr
Match: KAG6579388.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (519), Expect = 8.50e-64
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 50  EQVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYE 109
           EQVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYE
Sbjct: 47  EQVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYE 106

Query: 110 KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGG EKKK
Sbjct: 107 KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 159

[Close]
BLAST of MELO.jh102413.1.t1 vs. NCBI nr
Match: KAG7013242.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (511), Expect = 8.58e-64
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 2   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 61

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 62  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111

[Close]
BLAST of MELO.jh102413.1.t1 vs. NCBI nr
Match: XP_022923053.1 (60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923055.1 60S ribosomal protein L36-2-like isoform X2 [Cucurbita moschata] >XP_022923056.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022985002.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985003.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985004.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023552431.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200 bits (508), Expect = 2.38e-63
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-41
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG--AEKKK 163
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.8e-40
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 60  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 119
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 120 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---AEKK 162
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG   AEKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-39
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 0 

Query: 60  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 119
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 120 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGG-GAEKKK 163
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG GA +KK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKK 107

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 4.2e-33
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 144
           TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61  TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.9e-28
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 64  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 123
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 124 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAE 160
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A    E
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy TrEMBL
Match: A0A0A0L6L0 (60S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 9.89e-65
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy TrEMBL
Match: A0A1S3AYD7 (60S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 9.89e-65
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UN62 (60S ribosomal protein L36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00730 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 9.89e-65
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy TrEMBL
Match: E5GCU5 (60S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 9.89e-65
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. ExPASy TrEMBL
Match: A0A6J1H2C5 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=1)

HSP 1 Score: 201 bits (511), Expect = 4.02e-64
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 162
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]
BLAST of MELO.jh102413.1.t1 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG--AEKKK 163
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of MELO.jh102413.1.t1 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein )

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG--AEKKK 163
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of MELO.jh102413.1.t1 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein )

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-42
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 53  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 112
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 113 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG--AEKKK 163
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of MELO.jh102413.1.t1 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 164.9 bits (416), Expect = 5.6e-41
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 60  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 119
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 120 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---AEKK 162
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG   AEKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of MELO.jh102413.1.t1 vs. TAIR 10
Match: AT2G37600.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 164.9 bits (416), Expect = 5.6e-41
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 60  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 119
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 120 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---AEKK 162
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG   AEKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

The following BLAST results are available for this feature:
BLAST of MELO.jh102413.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140771.12.04e-64100.0060S ribosomal protein L36-2 [Cucumis sativus] >XP_004152381.1 60S ribosomal prot... [more]
XP_022945858.18.31e-6499.0960S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S riboso... [more]
KAG6579388.18.50e-6497.3560S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7013242.18.58e-6499.0960S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_022923053.12.38e-6398.1860S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1... [more]
BLAST of MELO.jh102413.1.t1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3525.4e-4180.3660S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1[more]
O809297.8e-4083.8160S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1[more]
Q9LZ573.0e-3982.6960S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1[more]
P528664.2e-3382.4260S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2[more]
Q9LRB86.9e-2870.8360S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1[more]
BLAST of MELO.jh102413.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6L09.89e-65100.0060S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1[more]
A0A1S3AYD79.89e-65100.0060S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1[more]
A0A5A7UN629.89e-65100.0060S ribosomal protein L36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
E5GCU59.89e-65100.0060S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A6J1H2C54.02e-6499.0960S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=... [more]
BLAST of MELO.jh102413.1.t1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53740.23.9e-4280.36Ribosomal protein L36e family protein [more]
AT3G53740.33.9e-4280.36Ribosomal protein L36e family protein [more]
AT3G53740.43.9e-4280.36Ribosomal protein L36e family protein [more]
AT2G37600.15.6e-4183.81Ribosomal protein L36e family protein [more]
AT2G37600.25.6e-4183.81Ribosomal protein L36e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 60..153
e-value: 2.9E-42
score: 142.8
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 47..162
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 107..117
IPR038097Ribosomal protein L36e domain superfamilyGENE3D1.10.10.176060S ribosomal protein L36coord: 51..160
e-value: 6.1E-44
score: 150.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..162
NoneNo IPR availablePANTHERPTHR10114:SF1460S RIBOSOMAL PROTEIN L36-1-RELATEDcoord: 47..162

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh102413.1MELO.jh102413.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh102413.1.t1.exon5MELO.jh102413.1.t1.exon5exon
MELO.jh102413.1.t1.exon4MELO.jh102413.1.t1.exon4exon
MELO.jh102413.1.t1.exon3MELO.jh102413.1.t1.exon3exon
MELO.jh102413.1.t1.exon2MELO.jh102413.1.t1.exon2exon
MELO.jh102413.1.t1.exon1MELO.jh102413.1.t1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.MELO.jh102413.1.t1cds.MELO.jh102413.1.t1_5CDS
cds.MELO.jh102413.1.t1cds.MELO.jh102413.1.t1_4CDS
cds.MELO.jh102413.1.t1cds.MELO.jh102413.1.t1_3CDS
cds.MELO.jh102413.1.t1cds.MELO.jh102413.1.t1_2CDS
cds.MELO.jh102413.1.t1cds.MELO.jh102413.1.t1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh102413.1.t1MELO.jh102413.1.t1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome