MELO.jh102045.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102045.1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr07: 14288750 .. 14289265 (-)
Sequence length	516
RNA-Seq Expression	MELO.jh102045.1.t1
Synteny	MELO.jh102045.1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTTTGCATTGACTACAGAGAGTTGAATAAGGTGACAGTCAATAACTGTTACCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGATCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTTCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCATTTGGTTTGACTAATGCCCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGAATTTCTTAGACACGTTCGTCATAGTTTTAATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGATGACCTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGCTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGTTAG

mRNA sequence

ATGCGCCTTTGCATTGACTACAGAGAGTTGAATAAGGTGACAGTCAATAACTGTTACCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGATCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTTCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCATTTGGTTTGACTAATGCCCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGAATTTCTTAGACACGTTCGTCATAGTTTTAATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGATGACCTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGCTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGTTAG

Coding sequence (CDS)

ATGCGCCTTTGCATTGACTACAGAGAGTTGAATAAGGTGACAGTCAATAACTGTTACCCCTTGCCCAGGATTGATGATTTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGATCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGATAGTGATATTCCTAAGACCGCTTTTCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCATTTGGTTTGACTAATGCCCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGAATTTCTTAGACACGTTCGTCATAGTTTTAATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGATGACCTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGCTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGTTAG

Protein sequence

MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS

Homology

[Close]

BLAST of MELO.jh102045.1.t1 vs. NCBI nr
Match: KAA0045381.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 345 bits (886), Expect = 6.38e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171

[Close]

BLAST of MELO.jh102045.1.t1 vs. NCBI nr
Match: TYK08914.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (832), Expect = 1.10e-111
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTV N YPLPRIDDLFDQL+GATVFSKIDLRSGYHQLRIRD DIPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLRGATVFSKIDLRSGYHQLRIRDGDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFK+FLD+FVIV IDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETLRANKLYAKFSKCEFWL+K+TFLGHVVSSEG SVDPAKIEAVT+
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 171

[Close]

BLAST of MELO.jh102045.1.t1 vs. NCBI nr
Match: KAA0056440.1 (pol protein [Cucumis melo var. makuwa] >TYK29084.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 326 bits (835), Expect = 1.95e-106
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTV NCYPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDIPKT 
Sbjct: 1   MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTV 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRY HYEFIVMSFGLTNAPAVF+DLMNRVFK+FLD+FVIV IDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYRHYEFIVMSFGLTNAPAVFIDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETL+ANKLYAKFSKCEFWLKK+TFLGHVVSSEG SVDPAKIEAVT+
Sbjct: 121 LHQVLETLQANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTN 171

[Close]

BLAST of MELO.jh102045.1.t1 vs. NCBI nr
Match: KAA0066469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (824), Expect = 2.33e-106
Identity = 157/171 (91.81%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNK TV N YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTA
Sbjct: 43  MRLCIDYRELNKATVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 102

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEF+V+SFGLTNAPAVFMDLMNRVFK+FLD+FVIV IDDILIYSKTEAEHEEH
Sbjct: 103 FRSRYGHYEFVVVSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 162

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETL+ANKLYAKFSKCEFWL+K+TFLGHVVSSEG SVDPAKIEAVT+
Sbjct: 163 LHQVLETLQANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 213

[Close]

BLAST of MELO.jh102045.1.t1 vs. NCBI nr
Match: KAA0040693.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (837), Expect = 1.91e-105
Identity = 157/171 (91.81%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTV NCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTA
Sbjct: 398 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 457

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFK+FLD+FVIV IDDI++YSKTE EHEEH
Sbjct: 458 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEH 517

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETLRANKLYAKFSKCEFWL+K+TFLGHVVSSEG SVDP KIEAVT+
Sbjct: 518 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTN 568

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 68/168 (40.48%), Postives = 107/168 (63.69%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAF 61
           R+ IDYR+LN++TV + +P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEHL 121
            +++GHYE++ M FGL NAPA F   MN + +  L+   +V +DDI+++S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAV 170
             V E L    L  +  KCEF  ++ TFLGHV++ +G   +P KIEA+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAI 430

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-34
Identity = 67/170 (39.41%), Postives = 105/170 (61.76%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAF 61
           R+ IDYR+LN++T+ + YP+P +D++  +L     F+ IDL  G+HQ+ + +  I KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEHL 121
            ++ GHYE++ M FGL NAPA F   MN + +  L+   +V +DDI+I+S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 172
             V   L    L  +  KCEF  K+  FLGH+V+ +G   +P K++A+ S
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVS 431

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-34
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           +R+CIDYR L KVT+ N YP+PR+DDLFD+L  AT F+K+DLRSGY Q+RI   D PKT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDIL---IYSKTEAEH 120
             +RYG +EF VM FGLTNA A F +LMN V   +LD FV+V +DD++   IYS +  EH
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 EEHLHQVLET 128
            +HL  V E+
Sbjct: 126 IKHLRVVRES 135

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 66/169 (39.05%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FR   G +E++VM +G++ APA F   +N +     ++ V+  +DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAV 170
           +  VL+ L+   L    +KCEF   ++ F+G+ +S +G +     I+ V
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 66/169 (39.05%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FR   G +E++VM +G++ APA F   +N +     ++ V+  +DDILI+SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAV 170
           +  VL+ L+   L    +KCEF   ++ F+G+ +S +G +     I+ V
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TV37 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001700 PE=4 SV=1)

HSP 1 Score: 345 bits (886), Expect = 3.09e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA
Sbjct: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CCF4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold61802G00010 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 5.31e-112
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTV N YPLPRIDDLFDQL+GATVFSKIDLRSGYHQLRIRD DIPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLRGATVFSKIDLRSGYHQLRIRDGDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFK+FLD+FVIV IDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETLRANKLYAKFSKCEFWL+K+TFLGHVVSSEG SVDPAKIEAVT+
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 171

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DZZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002100 PE=4 SV=1)

HSP 1 Score: 326 bits (835), Expect = 9.46e-107
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTV NCYPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDSDIPKT 
Sbjct: 1   MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTV 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRY HYEFIVMSFGLTNAPAVF+DLMNRVFK+FLD+FVIV IDDILIYSKTEAEHEEH
Sbjct: 61  FRSRYRHYEFIVMSFGLTNAPAVFIDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETL+ANKLYAKFSKCEFWLKK+TFLGHVVSSEG SVDPAKIEAVT+
Sbjct: 121 LHQVLETLQANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTN 171

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7VMK1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 1.13e-106
Identity = 157/171 (91.81%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNK TV N YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTA
Sbjct: 43  MRLCIDYRELNKATVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 102

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEF+V+SFGLTNAPAVFMDLMNRVFK+FLD+FVIV IDDILIYSKTEAEHEEH
Sbjct: 103 FRSRYGHYEFVVVSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 162

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETL+ANKLYAKFSKCEFWL+K+TFLGHVVSSEG SVDPAKIEAVT+
Sbjct: 163 LHQVLETLQANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 213

[Close]

BLAST of MELO.jh102045.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TC72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00070 PE=4 SV=1)

HSP 1 Score: 327 bits (837), Expect = 9.24e-106
Identity = 157/171 (91.81%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVNNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTV NCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPKTA
Sbjct: 398 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 457

Query: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKNFLDTFVIVLIDDILIYSKTEAEHEEH 120
           FRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFK+FLD+FVIV IDDI++YSKTE EHEEH
Sbjct: 458 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEH 517

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMTFLGHVVSSEGASVDPAKIEAVTS 171
           LHQVLETLRANKLYAKFSKCEFWL+K+TFLGHVVSSEG SVDP KIEAVT+
Sbjct: 518 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTN 568

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BLAST of MELO.jh102045.1.t1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-05
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 120 HLHQVLETLRANKLYAKFSKCEFWLKKMTFLG--HVVSSEGASVDPAKIEAV 170
           HL  VL+    ++ YA   KC F   ++ +LG  H++S EG S DPAK+EA+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAM 54

The following BLAST results are available for this feature:

BLAST of MELO.jh102045.1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045381.1	6.38e-120	100.00	pol protein [Cucumis melo var. makuwa]	[more]
TYK08914.1	1.10e-111	92.98	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056440.1	1.95e-106	92.98	pol protein [Cucumis melo var. makuwa] >TYK29084.1 pol protein [Cucumis melo var...	[more]
KAA0066469.1	2.33e-106	91.81	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040693.1	1.91e-105	91.81	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102045.1.t1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.4e-34	40.48	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.2e-34	39.41	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P31843	5.2e-34	56.15	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P0CT41	2.8e-32	39.05	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.8e-32	39.05	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO.jh102045.1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV37	3.09e-120	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001700 P...	[more]
A0A5D3CCF4	5.31e-112	92.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold61802G00010 ...	[more]
A0A5D3DZZ4	9.46e-107	92.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002100 P...	[more]
A0A5A7VMK1	1.13e-106	91.81	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=...	[more]
A0A5A7TC72	9.24e-106	91.81	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of MELO.jh102045.1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.0e-05	42.31	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 1.9E-67 score: 228.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 2.6E-24 score: 86.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 9.716076
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 1.9E-67 score: 228.6
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..170
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..170
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 1.62159E-81 score: 237.108
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO.jh102045.1	MELO.jh102045.1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO.jh102045.1.t1.exon1	MELO.jh102045.1.t1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.MELO.jh102045.1.t1	cds.MELO.jh102045.1.t1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO.jh102045.1.t1	MELO.jh102045.1.t1-protein	polypeptide