MC11g_new0253.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0253.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	MC11: 10891390 .. 10894079 (-)
Sequence length	672
RNA-Seq Expression	MC11g_new0253.1
Synteny	MC11g_new0253.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGCTAAAGTGAATTCATCTAGAGCTTTGATAGGTATACAAGTCTGCAACATTGAAAACGAGGTAGATCTTGAAATTCGAGGGTAATTGAATCTTGTTAGCCTTGGTGCCATATTTTTTAAGGATTCGGAAAGGTCCCAACTTCATTTTCTTTATTTTTATTGTATGTGCTTGAGGGAAATCTAATTTTTTTGAAGATAGATCATCACAAGGTCGCCTTCTTTCAAATCCACAGCTCGTCTTTTTTAATTCGCCGCAGTCTTGTATTTGGAGTTGGCTTGATTAGTGTGATCATGAACTTCTTGGTGGAGCTTCTACATGCGAGTTGCCATTTGTTCAACTTCTAAGCTAAAATCCACAGAAGAAGGCAAATTGGTGAGATCAGCGATTAATCTCGGAAATTTAGTATTAACAACTTCAAATGGGAGACGTCCCTATAGATCTATTTTGATATGATTGTAGGCGAACTTGGCTTGTGCAAGAACAAGATTCCTTTGTTTTGGATGATCTCCACTGAAGCAACGTATAGGAGCTCAAGGCTTACCTCCACTTACTTGTTGAAACAAATTCATTATGCAATCTCTCCGTTCATGATGCAAGCTACCACATCAGATTATCAGTTAGCAATATTCAGTCCGTTACAACCCATGACAGTAAGGAAATTGAAATGGAAGACTTGCCTTTTTTTAAGCATTAATGCCTCTTAAATATGCCTCATTCTCACCAAGAAATGTATATATTATTGTGAGCATTTTTTCAGCATTTACTTTCTGCCTATAACATATATCTCATAAAATCAGTTCCTTCTAAAAACTTATTTTAGTGCCGTTAGACAGCGGCCCAAAACTTCCCTAGTTTAGCTACTAAGTTCTCTTCTTTCTTCTGTTATATACTTGTAGGATTGTTTTGCAAAAGAGATGAATGATAATTATTCTCTGCTGATTAAAATTGTGTAAACTCTTTTATGGTATCAGAGCCATAACAGAAGAAAGCATAATCCTTTTCAGCACTTAATCTTTCTCATGGCCAAAGATAACTCTCACTATCTATCCAAACATTCCACCAATGCTCAAGTCTTATATCTATAAGGCTTAGCTTCTCAAATTATTTACTATGGAAGTCCCAAGTACTTCCTTTAATAAGGAATTTGGGGCTGGAAAAGCAGTTCATAGACAAGAGCTCCACTGGTGAAATAAAAGACATGGATAAAGATGAAGCTGAAAGCAGTATTTGGCTGAACAACGGCGGGTTGCTGACATCTTGGTTGCTTAGAACTATAACGGAAGACGTACTCGTCATGCTTGAAGAGACAGAATCCGCCTGCAAAATCTGGAAATCACTCGAAGATTTGCTCCTAACCATGACAAAAGAAAACGAGATTCATCTAAATGAAGATCTTTTCCATTTAAAGAAAGGCAACCAGTTTATGGATGAATACTTGAAGAAATTCAAGAAATACTGTGACAAATTGGCAGCAATGAAGAAACCTCTTGATGACACAGCAAAGGTATTTCATCTATCTAGAGGATCAGGAGCCAAATATAAGGAATTTCGAATTGCCATGCTCTCTAAGCCACCTTATCCAACATATAATCAGTTCATCCTCAGCCTAAAAACCTATGATCAACAACTGTTATTTGAAGAAGAAGAGGAAAAATCTATTGGATCCAATCACAACCAAGCTTATTACTCACAAAGAGGAAGATTTAAGAGAGGAGGAAGACAATTTTCTTCCAAAGGAAGAGGTTTCTATCACATCAAACCTCACAACATTCAACCTCACTGCAATTTCAACAAGGCAATACACGTTATGTACCTCAAAGAAACAACAGTTATTCAAATCAGTATGAAGGAAATTCATAACGAAAGGTAAGTTGTCAGATTTGTGGCAAACTAAATCACACAGCCTTGGAATGCAGGAATAGGTTTGATCACTCTTTTCAATCTGAAGAAATTCCCAAGGCCCTAGCTGTTATGAAGATGAATGAAGAAAGCGCCCCCACTTTCTATGCCGACTCAGGAGCTACTACCCATATAGTTAATGATCCGGGTAAAGTTACTCTCTTCAATCTTATAAGGGAAAAGAAAAGTTTTATATGTAGGTGATGGAAAAGGGTTAAATATTACACATATAGGAAATACATCTTTTAAAACTAAAGTAGGACAATTAGACTTAAAAAGGGTGCTGATGTTCCTGATATGACTAAAAATCTTCTGTCAATTAACAAATTAACTCGTGAAAATGACTGCTTTATCATATTCTCTGCTAACAATTTCGTGATTAAGACTAAATAGGGACATGTGTTGGCCAAGGGACATGAAAAGGGAGGACTTTATGCACTGGAGGAGAATGAATTCGATGCTGCTTCAAATAATATTTCTACTTCTGCTTTTCCGGCTTCAGTTTCTAATAATGCTTCTTATTCTATTTGGCATAAAAGAATGAGACACATGAATGATAGGTCCTTAAAACTTCTATGTGAACAAAACCTTGTTAATTTATCTAGTTGAAAAAAAGAAGAAATGGTCTGTGTAAACTGTCAACTTAGCAAAAGTTGTAAAATTCCATTTAGCTTAAATGAAAATCGAACTATGCATCCTCTTGATAAAGTTCATTGTAACTTATGGGGCCCTGCCCCTATTCTTTATTGCCAACAATTTAAATACTATGTTAGCTTTGTTGATGACT

mRNA sequence

ATGGATAAAGATGAAGCTGAAAGCAGTATTTGGCTGAACAACGGCGGGTTGCTGACATCTTGGTTGCTTAGAACTATAACGGAAGACGTACTCGTCATGCTTGAAGAGACAGAATCCGCCTGCAAAATCTGGAAATCACTCGAAGATTTGCTCCTAACCATGACAAAAGAAAACGAGATTCATCTAAATGAAGATCTTTTCCATTTAAAGAAAGGCAACCAGTTTATGGATGAATACTTGAAGAAATTCAAGAAATACTGTGACAAATTGGCAGCAATGAAGAAACCTCTTGATGACACAGCAAAGGTATTTCATCTATCTAGAGGATCAGGAGCCAAATATAAGGAATTTCGAATTGCCATGCTCTCTAAGCCACCTTATCCAACATATAATCAGTTCATCCTCAGCCTAAAAACCTATGATCAACAACTGTTATTTGAAGAAGAAGAGGAAAAATCTATTGGATCCAATCACAACCAAGCTTATTACTCACAAAGAGGAAGATTTAAGAGAGGAGGAAGACAATTTTCTTCCAAAGGAAGAGGTTTCTATCACATCAAACCTCACAACATTCAACCTCACTGCAATTTCAACAAGGCAATACACGTTATGTACCTCAAAGAAACAACAGTTATTCAAATCAGTATGAAGGAAATTCATAACGAAAGGTAA

Coding sequence (CDS)

ATGGATAAAGATGAAGCTGAAAGCAGTATTTGGCTGAACAACGGCGGGTTGCTGACATCTTGGTTGCTTAGAACTATAACGGAAGACGTACTCGTCATGCTTGAAGAGACAGAATCCGCCTGCAAAATCTGGAAATCACTCGAAGATTTGCTCCTAACCATGACAAAAGAAAACGAGATTCATCTAAATGAAGATCTTTTCCATTTAAAGAAAGGCAACCAGTTTATGGATGAATACTTGAAGAAATTCAAGAAATACTGTGACAAATTGGCAGCAATGAAGAAACCTCTTGATGACACAGCAAAGGTATTTCATCTATCTAGAGGATCAGGAGCCAAATATAAGGAATTTCGAATTGCCATGCTCTCTAAGCCACCTTATCCAACATATAATCAGTTCATCCTCAGCCTAAAAACCTATGATCAACAACTGTTATTTGAAGAAGAAGAGGAAAAATCTATTGGATCCAATCACAACCAAGCTTATTACTCACAAAGAGGAAGATTTAAGAGAGGAGGAAGACAATTTTCTTCCAAAGGAAGAGGTTTCTATCACATCAAACCTCACAACATTCAACCTCACTGCAATTTCAACAAGGCAATACACGTTATGTACCTCAAAGAAACAACAGTTATTCAAATCAGTATGAAGGAAATTCATAACGAAAGGTAA

Protein sequence

MDKDEAESSIWLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEIHLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIAMLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKGRGFYHIKPHNIQPHCNFNKAIHVMYLKETTVIQISMKEIHNER

Homology

[Close]

BLAST of MC11g_new0253.1 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 235 bits (599), Expect = 1.87e-73
Identity = 120/177 (67.80%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 11  WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEIHLNEDLFHLK 70
           W+NN GLLTSWLL  I EDVL +LE TE+A ++W SLE+LLLTMTKENEIHLNE L  LK
Sbjct: 75  WINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTKENEIHLNEALLTLK 134

Query: 71  KGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIAMLSKPPYPTY 130
           KG+  MDEY++KFK  CD+L AMKKPLDD  KVFHL+RG G KYK+FR AMLSK PYP+Y
Sbjct: 135 KGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKDFRTAMLSKAPYPSY 194

Query: 131 NQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKGRGFYHIK 187
           NQF+L+LK +DQ  L +EEEE+S   N NQA++S RGR +  GRQFSS+GRGFYH K
Sbjct: 195 NQFVLALKAHDQ-FLTDEEEERSSQVNLNQAFFSNRGRSRGRGRQFSSRGRGFYHSK 250

[Close]

BLAST of MC11g_new0253.1 vs. NCBI nr
Match: XP_020099653.1 (uncharacterized protein LOC109718063 [Ananas comosus])

HSP 1 Score: 175 bits (444), Expect = 9.51e-51
Identity = 95/197 (48.22%), Postives = 134/197 (68.02%), Query Frame = 0


Query: 2   DKDEA--ESSIWLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENE 61
           DK+E   E +IW+NN GLLTSWLL T+ E+VL ++    +  +IWK L++     TKE E
Sbjct: 54  DKEEENPEYTIWINNDGLLTSWLLGTMAEEVLGLVIGCNNVREIWKCLDEHFFDSTKEKE 113

Query: 62  IHLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRI 121
           +HL   L  LK GNQ +DE+++KFK  CD LAA+++PLDD  KVF LSR  G++Y+ + +
Sbjct: 114 MHLKNQLAVLK-GNQPLDEFIRKFKHSCDCLAAIQQPLDDVDKVFQLSRVLGSRYRTYNL 173

Query: 122 AMLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRF----KRGGRQ 181
            +LSKPPYPT+N++I+ LK ++QQL  E+EEEK+   N+ QA+ +QRGR       GG  
Sbjct: 174 VVLSKPPYPTFNEYIMGLKGFEQQLALEDEEEKAKAPNYAQAFIAQRGRGGCGRNNGGHN 233

Query: 182 FSSKGRGFYHIKPHNIQ 192
           F+S+GRGF     +N Q
Sbjct: 234 FNSRGRGFVQSGTYNNQ 249

[Close]

BLAST of MC11g_new0253.1 vs. NCBI nr
Match: RVW93768.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 186 bits (471), Expect = 4.93e-50
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 3   KDEAESSI--WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEI 62
           K+  + SI  W +N GLLTSWLL  +T++V+++L+ TE+A  +W SL + LL MTKE E+
Sbjct: 65  KETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTKEKEV 124

Query: 63  HLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIA 122
            L   L  +KKG + +DEYL++FK  CD LAA++KP+ D  KVF L++G G KY +FR+A
Sbjct: 125 QLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMDFRVA 184

Query: 123 MLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKG 182
           MLSKPPYP+YNQF+L+L+ ++Q ++ E EE K    NH QAY++QRGR +  G +F SKG
Sbjct: 185 MLSKPPYPSYNQFVLALQGHEQMIMIENEENKE-SINHEQAYFTQRGRGRNRGGRFLSKG 244

[Close]

BLAST of MC11g_new0253.1 vs. NCBI nr
Match: RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 185 bits (470), Expect = 8.07e-50
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 3   KDEAESSI--WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEI 62
           K+  + SI  W +N GLLTSWLL  +TE+V+++L+ TE+A  +W SL + LL MTKE E+
Sbjct: 79  KETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTKEKEV 138

Query: 63  HLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIA 122
            L   L  +KKG + +DEYL++FK  CD LAA++KP+ D  KVF L++G G KY +FR+A
Sbjct: 139 QLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMDFRVA 198

Query: 123 MLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKG 182
           MLSKPPYP+YNQF+L+L+ ++Q ++ E EE K    NH QAY++QRGR +  G +F S+G
Sbjct: 199 MLSKPPYPSYNQFVLALQGHEQMIMTENEENKE-SINHEQAYFTQRGRGRNQGGRFLSRG 258

[Close]

BLAST of MC11g_new0253.1 vs. NCBI nr
Match: RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 185 bits (470), Expect = 8.11e-50
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 3   KDEAESSI--WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEI 62
           K+  + SI  W +N GLLTSWLL  +TE+V+++L+ TE+A  +W SL + LL MTKE E+
Sbjct: 110 KETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTKEKEV 169

Query: 63  HLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIA 122
            L   L  +KKG + +DEYL++FK  CD LAA++KP+ D  KVF L++G G KY +FR+A
Sbjct: 170 QLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMDFRVA 229

Query: 123 MLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKG 182
           MLSKPPYP+YNQF+L+L+ ++Q ++ E EE K    NH QAY++QRGR +  G +F S+G
Sbjct: 230 MLSKPPYPSYNQFVLALQGHEQMIMTENEENKE-SINHEQAYFTQRGRGRNRGGRFLSRG 289

[Close]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 9.04e-74
Identity = 120/177 (67.80%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 11  WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEIHLNEDLFHLK 70
           W+NN GLLTSWLL  I EDVL +LE TE+A ++W SLE+LLLTMTKENEIHLNE L  LK
Sbjct: 75  WINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTKENEIHLNEALLTLK 134

Query: 71  KGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIAMLSKPPYPTY 130
           KG+  MDEY++KFK  CD+L AMKKPLDD  KVFHL+RG G KYK+FR AMLSK PYP+Y
Sbjct: 135 KGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKDFRTAMLSKAPYPSY 194

Query: 131 NQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKGRGFYHIK 187
           NQF+L+LK +DQ  L +EEEE+S   N NQA++S RGR +  GRQFSS+GRGFYH K
Sbjct: 195 NQFVLALKAHDQ-FLTDEEEERSSQVNLNQAFFSNRGRSRGRGRQFSSRGRGFYHSK 250

[Close]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL
Match: A0A6P5G1U2 (uncharacterized protein LOC109718063 OS=Ananas comosus OX=4615 GN=LOC109718063 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 4.60e-51
Identity = 95/197 (48.22%), Postives = 134/197 (68.02%), Query Frame = 0


Query: 2   DKDEA--ESSIWLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENE 61
           DK+E   E +IW+NN GLLTSWLL T+ E+VL ++    +  +IWK L++     TKE E
Sbjct: 54  DKEEENPEYTIWINNDGLLTSWLLGTMAEEVLGLVIGCNNVREIWKCLDEHFFDSTKEKE 113

Query: 62  IHLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRI 121
           +HL   L  LK GNQ +DE+++KFK  CD LAA+++PLDD  KVF LSR  G++Y+ + +
Sbjct: 114 MHLKNQLAVLK-GNQPLDEFIRKFKHSCDCLAAIQQPLDDVDKVFQLSRVLGSRYRTYNL 173

Query: 122 AMLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRF----KRGGRQ 181
            +LSKPPYPT+N++I+ LK ++QQL  E+EEEK+   N+ QA+ +QRGR       GG  
Sbjct: 174 VVLSKPPYPTFNEYIMGLKGFEQQLALEDEEEKAKAPNYAQAFIAQRGRGGCGRNNGGHN 233

Query: 182 FSSKGRGFYHIKPHNIQ 192
           F+S+GRGF     +N Q
Sbjct: 234 FNSRGRGFVQSGTYNNQ 249

[Close]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL
Match: A0A438IAM2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3180 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.39e-50
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 3   KDEAESSI--WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEI 62
           K+  + SI  W +N GLLTSWLL  +T++V+++L+ TE+A  +W SL + LL MTKE E+
Sbjct: 65  KETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTKEKEV 124

Query: 63  HLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIA 122
            L   L  +KKG + +DEYL++FK  CD LAA++KP+ D  KVF L++G G KY +FR+A
Sbjct: 125 QLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMDFRVA 184

Query: 123 MLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKG 182
           MLSKPPYP+YNQF+L+L+ ++Q ++ E EE K    NH QAY++QRGR +  G +F SKG
Sbjct: 185 MLSKPPYPSYNQFVLALQGHEQMIMIENEENKE-SINHEQAYFTQRGRGRNRGGRFLSKG 244

[Close]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL
Match: A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 3.91e-50
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 3   KDEAESSI--WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEI 62
           K+  + SI  W +N GLLTSWLL  +TE+V+++L+ TE+A  +W SL + LL MTKE E+
Sbjct: 79  KETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTKEKEV 138

Query: 63  HLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIA 122
            L   L  +KKG + +DEYL++FK  CD LAA++KP+ D  KVF L++G G KY +FR+A
Sbjct: 139 QLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMDFRVA 198

Query: 123 MLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKG 182
           MLSKPPYP+YNQF+L+L+ ++Q ++ E EE K    NH QAY++QRGR +  G +F S+G
Sbjct: 199 MLSKPPYPSYNQFVLALQGHEQMIMTENEENKE-SINHEQAYFTQRGRGRNQGGRFLSRG 258

[Close]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL
Match: A0A438E6Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1575 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 3.93e-50
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 3   KDEAESSI--WLNNGGLLTSWLLRTITEDVLVMLEETESACKIWKSLEDLLLTMTKENEI 62
           K+  + SI  W +N GLLTSWLL  +TE+V+++L+ TE+A  +W SL + LL MTKE E+
Sbjct: 110 KETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTKEKEV 169

Query: 63  HLNEDLFHLKKGNQFMDEYLKKFKKYCDKLAAMKKPLDDTAKVFHLSRGSGAKYKEFRIA 122
            L   L  +KKG + +DEYL++FK  CD LAA++KP+ D  KVF L++G G KY +FR+A
Sbjct: 170 QLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMDFRVA 229

Query: 123 MLSKPPYPTYNQFILSLKTYDQQLLFEEEEEKSIGSNHNQAYYSQRGRFKRGGRQFSSKG 182
           MLSKPPYP+YNQF+L+L+ ++Q ++ E EE K    NH QAY++QRGR +  G +F S+G
Sbjct: 230 MLSKPPYPSYNQFVLALQGHEQMIMTENEENKE-SINHEQAYFTQRGRGRNRGGRFLSRG 289

The following BLAST results are available for this feature:

BLAST of MC11g_new0253.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0253.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	1.87e-73	67.80	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
XP_020099653.1	9.51e-51	48.22	uncharacterized protein LOC109718063 [Ananas comosus]	[more]
RVW93768.1	4.93e-50	51.91	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW19921.1	8.07e-50	51.91	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW43526.1	8.11e-50	51.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	9.04e-74	67.80	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6P5G1U2	4.60e-51	48.22	uncharacterized protein LOC109718063 OS=Ananas comosus OX=4615 GN=LOC109718063 P...	[more]
A0A438IAM2	2.39e-50	51.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438C9J9	3.91e-50	51.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E6Z5	3.93e-50	51.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of MC11g_new0253.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 19..142 e-value: 9.9E-15 score: 54.5
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 5..199
None	No IPR available	PANTHER	PTHR47481:SF2	SUBFAMILY NOT NAMED	coord: 5..199

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0253	MC11g_new0253	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0253.1-cds	MC11g_new0253.1-cds-MC11:10892206..10892877	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0253.1	MC11g_new0253.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0019538	protein metabolic process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140096	catalytic activity, acting on a protein
molecular_function	GO:0016787	hydrolase activity