MC11g_new0252.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0252.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	MC11: 10835382 .. 10836472 (-)
Sequence length	444
RNA-Seq Expression	MC11g_new0252.1
Synteny	MC11g_new0252.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGATTTGGGTGAGCTATCCTATTTTCTAAGCATGCAGATCAGTAGAAATGATGGTTCTTTGCACATGTCTCAATGTAAATATTTTGCTGATCTTCTACAGAGAGCTGAAATGACAATTGCAAACCTACTGACACTCCAATGGCTGCTGATAAGACTTTATCTCTCACAGATGGTGAACCGTTTCATGACCCATCTCTCTATAGAAGCATCGTTGGTGCTCTTCAATACTATACTCTCACTCGCCCGGACTTAAGCTTTTCTATAAATAAAGTATGTCAATTTCTTCATGCTCCAACTACAGAACATTGGCTTGTAGTCAAGAGAATTTTGTGTTATATTAAATGTACAAGTTCTCGTGGGATTACTTTTACACGATCTTCCCATCTGGCTCTGACTTGTTACATAGATGCTGATTGGGCTAGTTGCCCAGATGATAGGCGCAGTACTGGTGGGCTTTGTGTTTTTCTCGGTAATAACTTGGTCTCTTGGTCATCTTCTAAACAGAAAGTTGTCTCTCGATCTAGTGCCGAGTCTGAATATAGAGGGATGTCCAATGCTACTGCCGAGCTTATTTGGCTTTAGTCTGTGTTATTCGAAATTGGTATTTCTTTGCCCTCAACTCCTTTACTTTTGTGTGATAATGTCAGTGCTACTTACTTGGCTGCAAATCCCGTTTTACACAAACGTTCAAAGTACATAAAGATTGATCATCACTTTATTCGAGAGCGGGTGCTTCGTAAACAATTATTAGTTCAGTTTGTACCATTAGAGGACCAACTCACTGATATCATGACAAAGTCACTCCCAACACAGAGGTTTCGTAGTCTATGGACCAAGCTCACCGTGCATGGCCCAACTTCGCTTGCGGGGGGATGATAGAATGTTATTTATCCTTATATTTTCTGGGTCTATTCTTCTTTATTTCTTATGTGTAATAGTTTGTTATTTTCTAACAAATATTCTAGCTCCACGTGTAGAGACTCATTTACTTTATATTATGAGCCTTTCTTCCTTTTCATTATTATTGAAGATTCTATTCTCCAATTGTACGCTACCGTCTTCTTTACTTTTCTATGATCATTGGGGAC

mRNA sequence

ATGGCTGCTGATAAGACTTTATCTCTCACAGATGGTGAACCGTTTCATGACCCATCTCTCTATAGAAGCATCGTTGGTGCTCTTCAATACTATACTCTCACTCGCCCGGACTTAAGCTTTTCTATAAATAAAGTATGTCAATTTCTTCATGCTCCAACTACAGAACATTGGCTTGTAGTCAAGAGAATTTTGTGTTATATTAAATGTACAAGTTCTCGTGGGATTACTTTTACACGATCTTCCCATCTGGCTCTGACTTGTTACATAGATGCTGATTGGGCTAGTTGCCCAGATGATAGGCGCAGTACTGGTGGGCTTTGTGTTTTTCTCGGTAATAACTTGGTCTCTTGGTCATCTTCTAAACAGAAAGTTGTCTCTCGATCTAGTGCCGAGTCTGAATATAGAGGGATGTCCAATGCTACTGCCGAGCTTATTTGGCTTTAG

Coding sequence (CDS)

ATGGCTGCTGATAAGACTTTATCTCTCACAGATGGTGAACCGTTTCATGACCCATCTCTCTATAGAAGCATCGTTGGTGCTCTTCAATACTATACTCTCACTCGCCCGGACTTAAGCTTTTCTATAAATAAAGTATGTCAATTTCTTCATGCTCCAACTACAGAACATTGGCTTGTAGTCAAGAGAATTTTGTGTTATATTAAATGTACAAGTTCTCGTGGGATTACTTTTACACGATCTTCCCATCTGGCTCTGACTTGTTACATAGATGCTGATTGGGCTAGTTGCCCAGATGATAGGCGCAGTACTGGTGGGCTTTGTGTTTTTCTCGGTAATAACTTGGTCTCTTGGTCATCTTCTAAACAGAAAGTTGTCTCTCGATCTAGTGCCGAGTCTGAATATAGAGGGATGTCCAATGCTACTGCCGAGCTTATTTGGCTTTAG

Protein sequence

MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSKQKVVSRSSAESEYRGMSNATAELIWL

Homology

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-35
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 1    MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
            MA    L+L  G    DP+ YR IVG+LQY   TRPDLS+++N++ Q++H PT +HW  +
Sbjct: 1208 MATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNAL 1267

Query: 61   KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
            KR+L Y+  T   GI   + + L+L  Y DADWA   DD  ST G  V+LG++ +SWSS 
Sbjct: 1268 KRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSK 1327

Query: 121  KQKVVSRSSAESEYRGMSNATAELIWL 148
            KQK V RSS E+EYR ++N ++EL W+
Sbjct: 1328 KQKGVVRSSTEAEYRSVANTSSELQWI 1354

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.0e-35
Identity = 71/147 (48.30%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 1    MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
            MA    LSL  G    DP+ YR IVG+LQY   TRPD+S+++N++ QF+H PT EH   +
Sbjct: 1225 MAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQAL 1284

Query: 61   KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
            KRIL Y+  T + GI   + + L+L  Y DADWA   DD  ST G  V+LG++ +SWSS 
Sbjct: 1285 KRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSK 1344

Query: 121  KQKVVSRSSAESEYRGMSNATAELIWL 148
            KQK V RSS E+EYR ++N ++E+ W+
Sbjct: 1345 KQKGVVRSSTEAEYRSVANTSSEMQWI 1371

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-34
Identity = 67/132 (50.76%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 15  FHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILCYIKCTSSRG 74
           + DPS +RSIVGALQY TLTRPD+S+++N VCQ +H PT   + ++KR+L Y+K T   G
Sbjct: 94  YPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG 153

Query: 75  ITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSKQKVVSRSSAESEY 134
           +   ++S L +  + D+DWA C   RRST G C FLG N++SWS+ +Q  VSRSS E+EY
Sbjct: 154 LYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEY 213

Query: 135 RGMSNATAELIW 147
           R ++   AEL W
Sbjct: 214 RALALTAAELTW 225

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-24
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 21  YRSIVGALQY-YTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILCYIKCTSSRGITFTR 80
           Y S VGA+ Y   +TRPDL+ ++  + QF   P   HW  +KR+L Y++ T + G+ FTR
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 81  SSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSKQKVVSRSSAESEYRGMSN 140
           +    L  Y DADWA   + RRST G    L    VSW S KQ+ V+ SS E EY  +S 
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSE 125

Query: 141 ATAELIWL 148
           AT E +WL
Sbjct: 126 ATQEAVWL 133

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy Swiss-Prot
Match: P93290 (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 30  YYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILCYIKCTSSRGITFTRSSHLALTCYI 89
           Y T+TRPDL+F++N++ QF  A  T     V ++L Y+K T  +G+ ++ +S L L  + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 90  DADWASCPDDRRSTGGLC 108
           D+DWASCPD RRS  G C
Sbjct: 62  DSDWASCPDTRRSVTGFC 79

[Close]

BLAST of MC11g_new0252.1 vs. NCBI nr
Match: RVX05509.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 206 bits (524), Expect = 3.71e-62
Identity = 95/147 (64.63%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           M+   +LSL DGEP  DPSLY  IVGALQY T+TRPD++FS+NKVCQF+H+PTT HW  V
Sbjct: 157 MSTSSSLSLYDGEPLSDPSLYHRIVGALQYCTITRPDINFSVNKVCQFMHSPTTTHWQAV 216

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KRILCY+K T S GI+   S+ L+LTCYID DWA  P+DR+ST G   FLG NL+SWS +
Sbjct: 217 KRILCYLKSTISHGISLQPSTDLSLTCYIDVDWADYPNDRKSTSGHYCFLGPNLISWSYT 276

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVS SS ESEY+G++NA +ELIW+
Sbjct: 277 KQKVVSHSSVESEYKGLANAASELIWI 303

[Close]

BLAST of MC11g_new0252.1 vs. NCBI nr
Match: XP_038903624.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 195 bits (496), Expect = 3.05e-61
Identity = 95/145 (65.52%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           MA   TLSLTDG P  +P  Y+S++GALQY TLTRPD+SFS+NK+CQF+HAPT  H  V 
Sbjct: 1   MAFGNTLSLTDGLPLENPYEYQSLIGALQYCTLTRPDISFSVNKLCQFMHAPTFSHLQVA 60

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KR+L Y+K T+   +  ++S  LALTCY DADWASCPDDRRST    VFLG++L+SW SS
Sbjct: 61  KRLLQYLKGTAHHRLLLSKSPALALTCYSDADWASCPDDRRSTSDFYVFLGSSLISWCSS 120

Query: 121 KQKVVSRSSAESEYRGMSNATAELI 145
           KQKVVSRSSAESEYRG+SN   ELI
Sbjct: 121 KQKVVSRSSAESEYRGLSNVVVELI 145

[Close]

BLAST of MC11g_new0252.1 vs. NCBI nr
Match: CAN68364.1 (hypothetical protein VITISV_021899 [Vitis vinifera])

HSP 1 Score: 201 bits (512), Expect = 4.21e-60
Identity = 94/147 (63.95%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           MAA   LS+ DG    DP+LYRS+VGALQY T+TRPD+++++NK+CQF+HAPT+ H  VV
Sbjct: 82  MAAGPVLSIADGTRLEDPTLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQVV 141

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KR+L Y+K +   G++F  SS L L  Y DADWASCPDDRRST G C+F G NLVSWS+S
Sbjct: 142 KRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADWASCPDDRRSTSGYCIFFGGNLVSWSAS 201

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVSRSS ESEYRG++NA AEL W+
Sbjct: 202 KQKVVSRSSTESEYRGLANAAAELTWI 228

[Close]

BLAST of MC11g_new0252.1 vs. NCBI nr
Match: RVW19932.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 198 bits (503), Expect = 7.27e-60
Identity = 92/147 (62.59%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           MAA   LS+ DG    DP+LYRS+VGALQY T+TRPD+++++NK+CQF+HAPT+ H   V
Sbjct: 116 MAAGPVLSIADGTRLEDPTLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQAV 175

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KR+L Y+K +   G++F  SS L L  Y +ADWASCPDDRRST G C+F G NLVSWS+S
Sbjct: 176 KRVLRYLKGSLFYGLSFQPSSSLDLIAYTNADWASCPDDRRSTSGYCIFFGGNLVSWSAS 235

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVSRSS ESEYRG++NA AEL W+
Sbjct: 236 KQKVVSRSSTESEYRGLANAAAELTWI 262

[Close]

BLAST of MC11g_new0252.1 vs. NCBI nr
Match: XP_038885889.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 195 bits (495), Expect = 2.51e-59
Identity = 93/146 (63.70%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 2   AADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVVK 61
           A   +LSLTDG+   +PS YRS+VGALQY TLTRP++SFS+NK+CQF+HAPTT H    K
Sbjct: 114 AVGASLSLTDGQSLDNPSEYRSLVGALQYCTLTRPNISFSVNKLCQFMHAPTTSHLQAAK 173

Query: 62  RILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSK 121
           R++ ++K T++ GI  T+S  LALT Y DADWASC +DRRST G CVFLG+ L+SWS SK
Sbjct: 174 RLIRHLKGTNNHGILLTKSPVLALTYYTDADWASCQNDRRSTNGFCVFLGSILISWSFSK 233

Query: 122 QKVVSRSSAESEYRGMSNATAELIWL 147
           QKVVSRSSAESEY G+SN  AE++W+
Sbjct: 234 QKVVSRSSAESEYCGLSNVAAEVLWI 259

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy TrEMBL
Match: A0A438J968 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2068 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 1.80e-62
Identity = 95/147 (64.63%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           M+   +LSL DGEP  DPSLY  IVGALQY T+TRPD++FS+NKVCQF+H+PTT HW  V
Sbjct: 157 MSTSSSLSLYDGEPLSDPSLYHRIVGALQYCTITRPDINFSVNKVCQFMHSPTTTHWQAV 216

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KRILCY+K T S GI+   S+ L+LTCYID DWA  P+DR+ST G   FLG NL+SWS +
Sbjct: 217 KRILCYLKSTISHGISLQPSTDLSLTCYIDVDWADYPNDRKSTSGHYCFLGPNLISWSYT 276

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVS SS ESEY+G++NA +ELIW+
Sbjct: 277 KQKVVSHSSVESEYKGLANAASELIWI 303

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy TrEMBL
Match: A5BVZ9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_021899 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 2.04e-60
Identity = 94/147 (63.95%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           MAA   LS+ DG    DP+LYRS+VGALQY T+TRPD+++++NK+CQF+HAPT+ H  VV
Sbjct: 82  MAAGPVLSIADGTRLEDPTLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQVV 141

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KR+L Y+K +   G++F  SS L L  Y DADWASCPDDRRST G C+F G NLVSWS+S
Sbjct: 142 KRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADWASCPDDRRSTSGYCIFFGGNLVSWSAS 201

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVSRSS ESEYRG++NA AEL W+
Sbjct: 202 KQKVVSRSSTESEYRGLANAAAELTWI 228

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy TrEMBL
Match: A0A438C9K6 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3306 PE=4 SV=1)

HSP 1 Score: 198 bits (503), Expect = 3.52e-60
Identity = 92/147 (62.59%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           MAA   LS+ DG    DP+LYRS+VGALQY T+TRPD+++++NK+CQF+HAPT+ H   V
Sbjct: 116 MAAGPVLSIADGTRLEDPTLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQAV 175

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KR+L Y+K +   G++F  SS L L  Y +ADWASCPDDRRST G C+F G NLVSWS+S
Sbjct: 176 KRVLRYLKGSLFYGLSFQPSSSLDLIAYTNADWASCPDDRRSTSGYCIFFGGNLVSWSAS 235

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVSRSS ESEYRG++NA AEL W+
Sbjct: 236 KQKVVSRSSTESEYRGLANAAAELTWI 262

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy TrEMBL
Match: A0A438GRU7 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_980 PE=4 SV=1)

HSP 1 Score: 192 bits (487), Expect = 2.72e-58
Identity = 90/143 (62.94%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 5   KTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRIL 64
           +TLS +DG P  DPS YR IVGALQY T TRPD++F++NK CQF+  P+  HWL VKRIL
Sbjct: 15  RTLSQSDGVPLPDPSEYRRIVGALQYVTPTRPDIAFAVNKACQFMAKPSDVHWLAVKRIL 74

Query: 65  CYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSKQKV 124
            Y+K T S G+ F  S+ + L  Y DADWASCPDDRRST G CVFLG+NL+SWSSSKQ++
Sbjct: 75  RYLKGTISLGLHFQTSTSMELQGYNDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRL 134

Query: 125 VSRSSAESEYRGMSNATAELIWL 147
           VS++SA+SEYRG+ + TAEL+W+
Sbjct: 135 VSKNSAKSEYRGLVSLTAELVWI 157

[Close]

BLAST of MC11g_new0252.1 vs. ExPASy TrEMBL
Match: A0A438JZY3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1099 PE=4 SV=1)

HSP 1 Score: 204 bits (519), Expect = 4.54e-58
Identity = 94/147 (63.95%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MAADKTLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVV 60
           MA    LS+ DG    DP+LYRS+VGALQY T+TRPD+++++NK+CQF+HAPT+ H   V
Sbjct: 810 MAVGLVLSIADGTILEDPTLYRSLVGALQYCTITRPDIAYTVNKLCQFMHAPTSTHLQAV 869

Query: 61  KRILCYIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSS 120
           KR+LCY+K +   G++F  SS L L  Y DADWASCPDDRRST G C+F G NLVSWS+S
Sbjct: 870 KRVLCYLKGSLFYGLSFQPSSSLNLIAYTDADWASCPDDRRSTSGYCIFFGGNLVSWSAS 929

Query: 121 KQKVVSRSSAESEYRGMSNATAELIWL 147
           KQKVVSRSS ESEYRG++NATAEL W+
Sbjct: 930 KQKVVSRSSTESEYRGLANATAELTWI 956

[Close]

BLAST of MC11g_new0252.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-35
Identity = 67/132 (50.76%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 15  FHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILCYIKCTSSRG 74
           + DPS +RSIVGALQY TLTRPD+S+++N VCQ +H PT   + ++KR+L Y+K T   G
Sbjct: 94  YPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHG 153

Query: 75  ITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSKQKVVSRSSAESEY 134
           +   ++S L +  + D+DWA C   RRST G C FLG N++SWS+ +Q  VSRSS E+EY
Sbjct: 154 LYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEY 213

Query: 135 RGMSNATAELIW 147
           R ++   AEL W
Sbjct: 214 RALALTAAELTW 225

[Close]

BLAST of MC11g_new0252.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-33
Identity = 67/142 (47.18%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 6   TLSLTDGEPFHDPSLYRSIVGALQYYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILC 65
           T S   G  F D   YR ++G L Y  +TR D+SF++NK+ QF  AP   H   V +IL 
Sbjct: 363 TFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILH 422

Query: 66  YIKCTSSRGITFTRSSHLALTCYIDADWASCPDDRRSTGGLCVFLGNNLVSWSSSKQKVV 125
           YIK T  +G+ ++  + + L  + DA + SC D RRST G C+FLG +L+SW S KQ+VV
Sbjct: 423 YIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVV 482

Query: 126 SRSSAESEYRGMSNATAELIWL 148
           S+SSAE+EYR +S AT E++WL
Sbjct: 483 SKSSAEAEYRALSFATDEMMWL 504

[Close]

BLAST of MC11g_new0252.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 30  YYTLTRPDLSFSINKVCQFLHAPTTEHWLVVKRILCYIKCTSSRGITFTRSSHLALTCYI 89
           Y T+TRPDL+F++N++ QF  A  T     V ++L Y+K T  +G+ ++ +S L L  + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 90  DADWASCPDDRRSTGGLC 108
           D+DWASCPD RRS  G C
Sbjct: 62  DSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of MC11g_new0252.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.8e-35	47.62	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	9.0e-35	48.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	4.5e-34	50.76	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0CV72	7.1e-24	43.75	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P93290	1.8e-14	44.87	Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MC11g_new0252.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX05509.1	3.71e-62	64.63	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
XP_038903624.1	3.05e-61	65.52	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]
CAN68364.1	4.21e-60	63.95	hypothetical protein VITISV_021899 [Vitis vinifera]	[more]
RVW19932.1	7.27e-60	62.59	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
XP_038885889.1	2.51e-59	63.70	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]

BLAST of MC11g_new0252.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438J968	1.80e-62	64.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5BVZ9	2.04e-60	63.95	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A438C9K6	3.52e-60	62.59	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438GRU7	2.72e-58	62.94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976...	[more]
A0A438JZY3	4.54e-58	63.95	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of MC11g_new0252.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	3.2e-35	50.76	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	2.3e-33	47.18	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.3e-15	44.87	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF268	ATP-DEPENDENT DNA HELICASE	coord: 23..147
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 23..147
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 86..147 e-value: 5.62945E-35 score: 116.414
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0252	MC11g_new0252	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0252.1-cds	MC11g_new0252.1-cds-MC11:10835888..10836331	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0252.1	MC11g_new0252.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding