MC11g_new0182.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0182.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	histidine-rich glycoprotein-like
Location	MC11: 6930543 .. 6931662 (+)
Sequence length	393
RNA-Seq Expression	MC11g_new0182.1
Synteny	MC11g_new0182.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAACACATCCCCAAATCCCTCTATAAATTGGTAGTGATAATGTAATGTTTAAGCACCAATAACCCTAATTAACAAAGCAAAATACTTGCATTTCCAACTGAGCTTTGTTAATTACCAAAAATGGCCTACTCTAAGACGACCCTCCTTCTCGGCCTCCTCCTCGCTCTTCTTTTCGTCTCCTCTCATGTCTCTGCACGTCTACTCGGTATATGTCTATCTAATTATTTGTTAAGAATCATAACACTAAAAATGTGCTTTCGTGTATTAGTTTCTTAGTATGCTGGTGATTTAGCGTGAGGCATGGGAGACTATGAATTAATTTAAACTTCTCCATCGTTATTATAATTTACATGTTATATCTTGTGTTAATATTGAAGCTGACTTAGTTTGAATGGTAGAATTTAAACTAATTTTATAATTATATAATAATTTTTTGTGAATATTATTTTAAAACTAGGATGACCATTTACGAAATTCTTAAATTAATTTAAATTTATTCAATTAATCTTTTAGGTCTAGCTAACCCTGATTTTAACATAATTTTATTTGAACTCTTTTGCTTCATTCATTTTATATTGCAGCGGAAAAGAAAGGTTCTGTAGAGGGTGATGATCATCACCATGACCATGATCACGACCATGGACACCATGACCACGACCACGATCATGGGCACCATGACCACGACCACGACCACCATGGTGGCCATCACCATGATGCAGACATTGATAGCTTGGATGATCACCATGGACACCACGGCGGAGGACACGGTGGACACCACGGCGGTGGACACGGCCATGATGCTGACATTGATAGCTTGGATGATCATCATGGACACCACGACCATGGACACCACGACCACGATTCTAAAACCGATGGCGTTAAGAATTAGACCTAAAACCAGCACCCCTGTCTACTGCGCATGGTTGGTAATAATAAGAGTAGTGTAACGAAATGAAATAAAAAGTATGTTTTGTGTGTGTTTATTAATTTAAATAAAGCAAAGATATGTTGTTGTATGAAATGCTAAACTTTCATGCTTTGTTTGGTTTGTAGTAATTTCTGATCCTTGTGGATTATATATATATGGAATATTTAAGACTATAAAAAGTAATACTTGC

mRNA sequence

ATGGCCTACTCTAAGACGACCCTCCTTCTCGGCCTCCTCCTCGCTCTTCTTTTCGTCTCCTCTCATGTCTCTGCACGTCTACTCGCGGAAAAGAAAGGTTCTGTAGAGGGTGATGATCATCACCATGACCATGATCACGACCATGGACACCATGACCACGACCACGATCATGGGCACCATGACCACGACCACGACCACCATGGTGGCCATCACCATGATGCAGACATTGATAGCTTGGATGATCACCATGGACACCACGGCGGAGGACACGGTGGACACCACGGCGGTGGACACGGCCATGATGCTGACATTGATAGCTTGGATGATCATCATGGACACCACGACCATGGACACCACGACCACGATTCTAAAACCGATGGCGTTAAGAATTAG

Coding sequence (CDS)

ATGGCCTACTCTAAGACGACCCTCCTTCTCGGCCTCCTCCTCGCTCTTCTTTTCGTCTCCTCTCATGTCTCTGCACGTCTACTCGCGGAAAAGAAAGGTTCTGTAGAGGGTGATGATCATCACCATGACCATGATCACGACCATGGACACCATGACCACGACCACGATCATGGGCACCATGACCACGACCACGACCACCATGGTGGCCATCACCATGATGCAGACATTGATAGCTTGGATGATCACCATGGACACCACGGCGGAGGACACGGTGGACACCACGGCGGTGGACACGGCCATGATGCTGACATTGATAGCTTGGATGATCATCATGGACACCACGACCATGGACACCACGACCACGATTCTAAAACCGATGGCGTTAAGAATTAG

Protein sequence

MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHHDHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHDHDSKTDGVKN

Homology

[Close]

BLAST of MC11g_new0182.1 vs. NCBI nr
Match: XP_022138889.1 (histidine-rich membrane protein KE4 homolog 2-like [Momordica charantia])

HSP 1 Score: 237 bits (604), Expect = 2.97e-78
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH
Sbjct: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHD 120
           DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHD
Sbjct: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHD 120

Query: 121 HDSKTDGVKN 130
           HDSKTDGVKN
Sbjct: 121 HDSKTDGVKN 130

[Close]

BLAST of MC11g_new0182.1 vs. NCBI nr
Match: XP_038900076.1 (histidine-rich glycoprotein-like [Benincasa hispida])

HSP 1 Score: 137 bits (345), Expect = 9.42e-39
Identity = 93/122 (76.23%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKT L+LGLLLALLFVSSHVSARLL E KG VE D H H H HDHGHH HDH  GHH
Sbjct: 1   MAYSKTLLVLGLLLALLFVSSHVSARLLEEDKGGVESDHHGHHH-HDHGHHHHDH--GHH 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGH-HDHGHH 120
           DHDH HHG H HDA++D LD HHGHHGGGHG HHGG HGHDA+++ LD HH H HDHGHH
Sbjct: 61  DHDHGHHG-HDHDANVDGLDGHHGHHGGGHG-HHGGHHGHDANVNDLDGHHHHDHDHGHH 117

[Close]

BLAST of MC11g_new0182.1 vs. NCBI nr
Match: KAG7024647.1 (hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127 bits (320), Expect = 6.07e-35
Identity = 93/151 (61.59%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKT LLLGLLLALLFVSSHVSAR L EKK  VE D H H   HDHGHHDH H     
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGH---HDHGHHDHGH----- 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDH---- 120
            HDH HHG   HDA++D LD HHGHHGGGHGGHHG    HDAD+D LD HHGHHDH    
Sbjct: 61  -HDHGHHG---HDANVDGLDGHHGHHGGGHGGHHG----HDADVDDLDGHHGHHDHHDHH 120

Query: 121 ---------------GHH--DHDSKTDGVKN 130
                          GHH  DHD+K + VKN
Sbjct: 121 DHHDHHDHHDHHDHHGHHGHDHDAKIEDVKN 135

[Close]

BLAST of MC11g_new0182.1 vs. NCBI nr
Match: KAG6591765.1 (hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (319), Expect = 8.61e-35
Identity = 92/151 (60.93%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKT LLLGLLLALLF+SSHVSAR L EKK  VE D H H   HDHGHHDH H     
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGH---HDHGHHDHGH----- 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDH---- 120
            HDH HHG   HDA++D LD HHGHHGGGHGGHHG    HDAD+D LD HHGHHDH    
Sbjct: 61  -HDHGHHG---HDANVDGLDGHHGHHGGGHGGHHG----HDADVDDLDGHHGHHDHHDHH 120

Query: 121 ---------------GHH--DHDSKTDGVKN 130
                          GHH  DHD+K + VKN
Sbjct: 121 DHHDHHDHHDHHDHHGHHGHDHDAKIEDVKN 135

[Close]

BLAST of MC11g_new0182.1 vs. NCBI nr
Match: XP_023536482.1 (histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo] >XP_023536484.1 histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123 bits (309), Expect = 2.45e-33
Identity = 90/151 (59.60%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKT LLLGLLLALLFVSSHVSAR L EKK  VE D H H   HDHGHHDH    GHH
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGH---HDHGHHDH----GHH 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDH---- 120
                      HDA++D LD HHGHHGGGHGGHHG    HDAD+D LD HHGHHDH    
Sbjct: 61  G----------HDANVDGLDGHHGHHGGGHGGHHG----HDADVDDLDGHHGHHDHHDHH 120

Query: 121 ---------------GHH--DHDSKTDGVKN 130
                          GHH  DHD+KT+ VKN
Sbjct: 121 DHHDHHDHHDHHDHHGHHGHDHDAKTEDVKN 130

[Close]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL
Match: A0A6J1CBC6 (histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=3673 GN=LOC111009957 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 1.44e-78
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH
Sbjct: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHD 120
           DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHD
Sbjct: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDHGHHD 120

Query: 121 HDSKTDGVKN 130
           HDSKTDGVKN
Sbjct: 121 HDSKTDGVKN 130

[Close]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL
Match: A0A6J1F6Z7 (histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.99e-33
Identity = 89/145 (61.38%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKT LLLGLLLALLF+SSHVSAR L EKK  VE D H H   HDHGHHDH    GHH
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGH---HDHGHHDH----GHH 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDH---- 120
                      HDA++D LD HH HHGGGHGGHHG    HDADID LD HHGHHDH    
Sbjct: 61  G----------HDANVDGLDGHHEHHGGGHGGHHG----HDADIDDLDGHHGHHDHHDHH 120

Query: 121 ---------GHH--DHDSKTDGVKN 130
                    GHH  DHD+KT+ VKN
Sbjct: 121 DHHDHHDHHGHHGHDHDAKTEDVKN 124

[Close]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL
Match: A0A6J1IKT3 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.26e-32
Identity = 83/122 (68.03%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHGHHDHDHDHGHH 60
           MAYSKT LLLGLLLALLFVSSHVSAR L EKK  VE D H H   HDHGHHDH    GHH
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGH---HDHGHHDH----GHH 60

Query: 61  DHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDADIDSLDDHHGHHDH-GHH 120
                      HDA++D LD HHGHHGGGHGGHHG    HDAD+D LD HHGHHDH  HH
Sbjct: 61  G----------HDANVDGLDGHHGHHGGGHGGHHG----HDADVDDLDGHHGHHDHHDHH 101

[Close]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL
Match: A0A6J1J1J4 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.03e-16
Identity = 88/168 (52.38%), Postives = 95/168 (56.55%), Query Frame = 0


Query: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDH---------DHGH- 60
           MAYSKT LLL LLLALL+VSSHVSARLL EKK  V+ DDH  DHDH         DH H 
Sbjct: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60

Query: 61  --HDHD-HDHGHHD-HDHDHHGGH-HHDADIDSLDDH--HGHHGGGHGGH----HGGGHG 120
             HDHD HDH  HD HDHD H  H H+D D D  DDH  + H    H  H    H   H 
Sbjct: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD 120

Query: 121 HDADIDSLDDHHGHHDHGH------------HDHDSKT-----DGVKN 130
           HDAD++SLDDHH  HDH H            HDHD        DG+KN
Sbjct: 121 HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 168

[Close]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL
Match: A0A6J1FL97 (prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111446778 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.65e-12
Identity = 58/87 (66.67%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1  MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDHHHDHDHDHG----HHDHDHD 60
          MAYSKT LLLGLLLALL+VSSHVSARLL EKK  V+ DDH  D DHDHG    + DHD D
Sbjct: 1  MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDH--DDDHDHGLGYRYDDHDDD 60

Query: 61 HGHHDHDHDHHGGHHHDA-DIDSLDDH 82
          H H  HDHD H  H HD  D D  DDH
Sbjct: 61 HDHDKHDHDDHDDHDHDDHDKDDHDDH 85

The following BLAST results are available for this feature:

BLAST of MC11g_new0182.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0182.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138889.1	2.97e-78	100.00	histidine-rich membrane protein KE4 homolog 2-like [Momordica charantia]	[more]
XP_038900076.1	9.42e-39	76.23	histidine-rich glycoprotein-like [Benincasa hispida]	[more]
KAG7024647.1	6.07e-35	61.59	hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591765.1	8.61e-35	60.93	hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023536482.1	2.45e-33	59.60	histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo] >XP_023536484.1 hi...	[more]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBC6	1.44e-78	100.00	histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=367...	[more]
A0A6J1F6Z7	1.99e-33	61.38	histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 P...	[more]
A0A6J1IKT3	1.26e-32	68.03	histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=...	[more]
A0A6J1J1J4	5.03e-16	52.38	histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=...	[more]
A0A6J1FL97	7.65e-12	66.67	prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MC11g_new0182.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0182	MC11g_new0182	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0182.1-cds	MC11g_new0182.1-cds-MC11:6930665..6930749	CDS
MC11g_new0182.1-cds	MC11g_new0182.1-cds-MC11:6931126..6931433	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0182.1	MC11g_new0182.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity