MC11g_new0152.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0152.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Lethal giant larvae protein homolog 1
Location	MC11: 6446624 .. 6451347 (-)
Sequence length	336
RNA-Seq Expression	MC11g_new0152.1
Synteny	MC11g_new0152.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATTTAATCTCTCCTCTCTGACTCTCATCTTCTTCATCCATATCTCTACATTAAAACCGATCTCCGACGACTGAGTTCCACGGACATTCTCTGGCACCAGTGATCTCTCAGGTAAACCTTTGTTTTTATAAAACTGAATCTGATTTTGGTTTCTGTTCATCATAATTTATTTTAATTTTTCGATCATTCTCCCAAAAAGCGAAGTTGAATCCGAAAGCGAAAGAGGTCTGAAATCGCAAAATTAGAGATCAACAACATTGTGTAAATCTCTGTTTCCTTTTGGATCCATGAACAGAAGCCAGATTCAGTTCTATAAAAAAGAAGAAAAAAGATTACCTGAGAGATTACTCGGTGCCGGAGAATACTTGGATAGACCGATTCAGTTTTTGGAGATCAACCATCGAAAATGCGCCACAAATACATGACCTTAAAGTTAGGCTTCTACATTATTGTTATGATTATTAATTGATTTTACCTATTTTATAGTAAGGGCAGGACGTGCATAAAATCTACGAAAACTCTCCGACGCCGAGTAATCTTTCAGGTAACGTTGAATCAGTACTTTTTATCTATTCACAAAGCTGAATCTGGTTTCTGTTCATCGTAATTTCTTGAATCGGAAGGTGAAGAGAGATTTTTACACATTTTGTATTGTTTTTGTTTTGTTCAGCCATATGTATCCAATCAAAACCTAATGAGAACGAAAATTAGAAATGAAAATAATGATGATGAAGAATTGAAACGAGTGAGTGAAGGAGATCTTTTATGCTTAATTTTGATGGTAGGTAATGGAACTGGGGACACTCGCTAATGGCTATGACATTTCATCACGGGCCTCGAAGGATGCATTGATCAGGTAAATTTTGTTGGCAGCAATGTCATAATTCTATTAAATTTAACTAAATATGTAATTGTACCAACTAAATTGTTAGAACTAAATCCTTACTTTGGAAAGTTGAAGGACTAAATCGTAATTTTTGAAAATTTACGAACTAAATAATTATTTTAGTAAAAACGTAAAAATATAAGAACCAAATATGTTTTTTAACCAATTCTAAAAATTATTACGTATTAATCTTTTTTTAATTATGTAAACTTTTTTTTCAGTAAAATCTAAAAAAGGTATAAAATTATCTATTGATGAACAAATTAGTTCATTTGTTCAAGAAAGAAATTTGACACTTTTATTTATTAATATTGGTCCATCTCAAAACCAATTGGTCATGAGAGGAATAATCATGTCTATTTTCACTTTCTCCTACAAAATTGGTCAAATATTCCAGAGTTACAGGAATAACCAGTAAAAAAAAGTGCTATGTAATTATTATTGGATTGCTATTTAACAATAAAACTAATACTAAAATTGACTTAATTAAAGTAACTATAGTATATAAAAAAATATACACACAAAGGGTTGTTTAGGGGTGTGGCTTGAATTTCAAGCCCATATGGCGAGTAAAGACATGAAGGCTGCTCCAAGAAAAAGGGAAAGATTAGCCAAAATTTGAAGCTTTCCATTGCTCTGCATTCTAGGGTTCATAAAATCTGCAGCCAAAAGATCTACTAGAGCCATATAGATCAAGATTCCAGCTGAGGCTGCATTCAAAATTCCCTCAACTATCAACGCTTTCGGGCTTTCTTCGTCGTAAGTATTCGTTACTCCAATGCCTATTGCTATCCCGACGGGCGTTGTGAGGCAGAAGAAAAGCGCCATTATTATTACTGCCTTGTTCTTGAACTTCGCCTGCACGTTTCACATCATTAGTCTAACTCTAACCCTCCTGTCTATAATCAAGGTTTTTTCTCTTTAGATCGTAATGAGTAAACTTAACAAAATTCAAACATCCCAAATGGTCAAAAATACTTTTGGTCCCTTACTTTTGTTAAAATAACAATTTAGTATCTGAACTTTAGCTTGTAACGATTTAGTCCCTGTATTTTTAAATTTATAACAATTTAATCCTTTGAACTTTAATATATTGTAATTTAAAGTGGGTTACAAATCGTAAACCTTTTTTGTTAAGTTTCTTTATATATATAGATTGATAAATTAAAGAGGGACAAAATATGTTTATAAATTAGAAAGATTAAATTATTATATGATAAAATTTAACACTTAATTTTAATAAATTTTGTTACGATAGGGACTAAATTGTCACAAATTTTAAACTACAGGCACTAAATCATTACAAGCTAAAATTCAAAGACTAAATTGTTATTTTAGTGAAAGTACATTGACTAAATCGTTACAAACTAATGTTCAAGGTCTAAATGTGTTTTTTAACCTAATTTTTTTCTTAAAATAACTCGAAGAAGGTTTTGAAGGACAGATCAGTAAAATGGTTAAAAAAATATGTTTATTTATTTAATAGCTTCATTTGAAGTATATAAAATAACAATAATATAAGAGATACGAGGTGCAAAAAGAGGATGAAGCACTAAATGAACTGAATTTAATAAGCTTTAATTTTGGATCCAAACATAGAACATAGCATGTTTTATTGCTTAATAATTTGTTTGAAAAGATATGCTTTGAAAATTCATAGGTCAATTTTTGTGGGAATCAAAGTCAACCAATGCACACAAGCATGCTGACAAATAGGTCCCATAAATTGAGTTAGATATTACACCACTCTGACCCACCACCATGACCATCCACACGGGTTTCACAAAAATTAATTGATACCCAAAAGAATCATAATATTTTTTTAACCATTGTTTTTTTTTTCTTTTCCTTTAGACTTTCAATAAATCATACTCATACATCAATAATTTTCATTGTTTTTGTGAGATAATTTGATTTTTTTTTCCGAACACTAATGAAAATAAGTAGTAGTTTTCAAAAAGTATATTTTGTTTTTAAAATTTTCCCAAGATTTTAAATATAGAAAAGAAAAAGAAAATATAGATAATACTTAGAAGTAGTAATGCCTCAATTATTTAAAAATAACATACAATTTACTTTATCAAAATAGTTATAAACATTTTGCCAATTTTATAAAAACAGTTTTGAATATTTATAAGTTCCTACAAAATACAAACAGATGAATGCATCAAAAAGACAATTTGAATTTACCTCTATCAAAAAAAAGAAGGTCAAATACACCAAAAATAACCATAAAAGTTTAACATAATCGTATTATTATTTACAAAGGCATAAATTTTACAAACAAAAGAAAGAAATATGTAATTAATTATACTAATTAAGGTTAAAAAAAAAATTACCTGAGCAATGCAACCTCCAAGGCCCATTCCTTCAAATAACTGATGAAAAGTGATGGCCGCCACAAGAGGTCTTATCGTTTTTGGATTATCAGAAACGCCCAAACCAATCCCAATAATTACAGAATGTACCACTATTCCCAGTTCCAATACCTACCATCAAAATTGAAATTCTGCATCAAAAATCTCCATCACCCATTTCAATTATTCATCATCTGTTTATTTTCTTTCTAATTTTTCATCATATTGGGTTTGATTTGATTAAAATATTCAGCAATTAATTAACACATGTCGCTGAACCAGAACAACAACAAAACCAAAGTGTGTAGGTCCTCTGTTCCCCTTTTCGGATTCAGGACAATTATGATGAACAGAAACCAGATTCAGTTTCACCCAAAAAAAAATTCAAAAAGAAAGATGAACTGTTCCAACGTTACCTGAGAGATCACCCGGTGCCGGAGAATCTCCGTTGATGTTCCGGCGACTTCGACGGAGCCATGAGCGTGACCATGAGTGCCGTGAGTGCGAACATGAACATGGCCGTCCTGAGCCACATCGCGCATCTCTTCGTCGCCGGTCACTGCAGGCTGAGCCTTCCTCAGATGGAGCCGAGTGTAATAAGAACTGGCACCAGCGTCCACCATCAGAGTTCCGATCGCCGCCACCATAGCCACCAAGCCAGTGAACGGAAACTTCCCCCACGGATTCTCTTTCAGTTTCGACGAGGTCAGTCTCTCGTAAGCATCGGGAAGAACATGGATGAATCCGGTCGACAGAATAACACCGGCGGCGAAGGCTTTAATCACGAAGAAAATCTCCTTCTCCGGACTTAAAGCGGGAAAGGCCTTCCCGAGCATAGGGATGAACACTCCAATGATTCCGGCGAGGAGAATCGTAGCTATGGCAATTAATTTGTATCTCAGAGCTAGGGTTTTATCGCGGTGGCCTACTGGTTCTCCTTCGTCTTCGGCGCAAGGGCAATCTGCCGCCATCACGGCAGGAAGAAGTAGAAGAAATAGACAGAAGAAAGCAAGAAGAAGGCGATGAAGCTTCGCGTCCGCCATTGCCATTGCCATGGCGAGGCCAGTTTTCGATTTGGGAACTTTCAAAGAAGAAGAAGAAGATGGGGCAAAAATGGCAGTCTATGGATAGGGATTTTAAGGAGTTTGTCAGGGAAAACAGAATTGACGTGTGAATTTCACGTACAGCTACAGATTAACAGCGGCCGAAAATACAAAATATATATTATTGTAATTATTCATTGGAATCGAATAAATAAATAAAATCTTGATTGATTTGGAAAAAAAAAATTAAAAAAAAAATATCTGTATGGATTGGCGAAACCATGTCGACATGAAAACACTGCAGAAGCGAAATTCGGAGAGAGTGTCGTAAGGGAAGTCGTTGAAGTCAACTTCAAATGTCGACACATTCTGTAATTTTTCAATATTTTCCCAATTTTACCCTCCGAGTTATTTCGAATTTTCTTTGGATTAAAG

mRNA sequence

ATGAGCGTGACCATGAGTGCCGTGAGTGCGAACATGAACATGGCCGTCCTGAGCCACATCGCGCATCTCTTCGTCGCCGGTCACTGCAGGCTGAGCCTTCCTCAGATGGAGCCGAGTGTAATAAGAACTGGCACCAGCGTCCACCATCAGAGTTCCGATCGCCGCCACCATAGCCACCAAGCCAGTGAACGGAAACTTCCCCCACGGATTCTCTTTCAGTTTCGACGAGGTCAGTCTCTCGTAAGCATCGGGAAGAACATGGATGAATCCGGTCGACAGAATAACACCGGCGGCGAAGGCTTTAATCACGAAGAAAATCTCCTTCTCCGGACTTAA

Coding sequence (CDS)

ATGAGCGTGACCATGAGTGCCGTGAGTGCGAACATGAACATGGCCGTCCTGAGCCACATCGCGCATCTCTTCGTCGCCGGTCACTGCAGGCTGAGCCTTCCTCAGATGGAGCCGAGTGTAATAAGAACTGGCACCAGCGTCCACCATCAGAGTTCCGATCGCCGCCACCATAGCCACCAAGCCAGTGAACGGAAACTTCCCCCACGGATTCTCTTTCAGTTTCGACGAGGTCAGTCTCTCGTAAGCATCGGGAAGAACATGGATGAATCCGGTCGACAGAATAACACCGGCGGCGAAGGCTTTAATCACGAAGAAAATCTCCTTCTCCGGACTTAA

Protein sequence

MSVTMSAVSANMNMAVLSHIAHLFVAGHCRLSLPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDESGRQNNTGGEGFNHEENLLLRT

Homology

[Close]

BLAST of MC11g_new0152.1 vs. NCBI nr
Match: GER48244.1 (lethal giant larvae protein homolog 1 [Striga asiatica])

HSP 1 Score: 72.8 bits (177), Expect = 1.41e-12
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 33  LPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDESGR 92
           L ++ P ++R G  VH Q  DRRHH  +  ER+  PR + + RRGQ+L  + +++DE  R
Sbjct: 135 LRRLPPPIVRHGVGVHQQGPDRRHHGDEPGEREFAPRPVAEARRGQALEGVRQHVDEPRR 194

Query: 93  QNNTGGEGFNHEENLLLR 110
           QN+ GGE F HEE   LR
Sbjct: 195 QNHAGGECFQHEEEAPLR 212

[Close]

BLAST of MC11g_new0152.1 vs. NCBI nr
Match: GER53990.1 (homolog of histone chaperone HIRA [Striga asiatica])

HSP 1 Score: 70.5 bits (171), Expect = 4.40e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 33  LPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDESGR 92
           LP+  P V+R G  VHHQ  D R H  +  ER++PPR   Q RRGQ++  + +++DE  R
Sbjct: 50  LPRHPPPVVRRGVRVHHQRPDGRQHGDEPGEREIPPRAG-QVRRGQAIEGVRQHVDEPRR 109

Query: 93  QNNTGGEGFNHEENLLL 109
           Q++ GGEG +HEE++ L
Sbjct: 110 QDDAGGEGLHHEEHVPL 125

[Close]

BLAST of MC11g_new0152.1 vs. NCBI nr
Match: OMO91903.1 (hypothetical protein COLO4_18028 [Corchorus olitorius])

HSP 1 Score: 60.8 bits (146), Expect = 5.27e-08
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 30  RLSLPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDE 89
           RLSL Q+ P ++ +  ++HHQS  R HH H+  +RK+ P +  +    Q+L+SIGK +++
Sbjct: 9   RLSLAQLVPFMVPSSKALHHQSQYRSHHCHKTRKRKMMPWVFAEAGACQTLISIGKYVNK 68

Query: 90  SGRQNNTGGEGF 101
           +G Q+N  GEG 
Sbjct: 69  AGGQDNAAGEGL 80

[Close]

BLAST of MC11g_new0152.1 vs. NCBI nr
Match: RWV78190.1 (hypothetical protein GW17_00060874 [Ensete ventricosum] >RWW42833.1 hypothetical protein BHE74_00051571 [Ensete ventricosum])

HSP 1 Score: 55.5 bits (132), Expect = 1.14e-06
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 28  HCRLSLPQMEPSV-IRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKN 87
           H R + P    +V +  G SV HQ  DR  H  + S+RKL PR   + R G+++ S+G++
Sbjct: 77  HGRHASPNAVRAVKVSGGHSVQHQRRDRGDHRAEPSKRKLLPRTPTETRGGEAVESVGED 136

Query: 88  MDESGRQNNTGGEGFNHEENLLL 109
           +DE+G +N+TG E  + EE +L 
Sbjct: 137 VDETGGENDTGSERLDDEEGILF 159

[Close]

BLAST of MC11g_new0152.1 vs. ExPASy TrEMBL
Match: A0A5A7QSL8 (Lethal giant larvae protein homolog 1 OS=Striga asiatica OX=4170 GN=STAS_25398 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.82e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 33  LPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDESGR 92
           L ++ P ++R G  VH Q  DRRHH  +  ER+  PR + + RRGQ+L  + +++DE  R
Sbjct: 135 LRRLPPPIVRHGVGVHQQGPDRRHHGDEPGEREFAPRPVAEARRGQALEGVRQHVDEPRR 194

Query: 93  QNNTGGEGFNHEENLLLR 110
           QN+ GGE F HEE   LR
Sbjct: 195 QNHAGGECFQHEEEAPLR 212

[Close]

BLAST of MC11g_new0152.1 vs. ExPASy TrEMBL
Match: A0A5A7R9N0 (Homolog of histone chaperone HIRA OS=Striga asiatica OX=4170 GN=STAS_31545 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.13e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 33  LPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDESGR 92
           LP+  P V+R G  VHHQ  D R H  +  ER++PPR   Q RRGQ++  + +++DE  R
Sbjct: 50  LPRHPPPVVRRGVRVHHQRPDGRQHGDEPGEREIPPRAG-QVRRGQAIEGVRQHVDEPRR 109

Query: 93  QNNTGGEGFNHEENLLL 109
           Q++ GGEG +HEE++ L
Sbjct: 110 QDDAGGEGLHHEEHVPL 125

[Close]

BLAST of MC11g_new0152.1 vs. ExPASy TrEMBL
Match: A0A1R3JAN2 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18028 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.55e-08
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 30  RLSLPQMEPSVIRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKNMDE 89
           RLSL Q+ P ++ +  ++HHQS  R HH H+  +RK+ P +  +    Q+L+SIGK +++
Sbjct: 9   RLSLAQLVPFMVPSSKALHHQSQYRSHHCHKTRKRKMMPWVFAEAGACQTLISIGKYVNK 68

Query: 90  SGRQNNTGGEGF 101
           +G Q+N  GEG 
Sbjct: 69  AGGQDNAAGEGL 80

[Close]

BLAST of MC11g_new0152.1 vs. ExPASy TrEMBL
Match: A0A444BX25 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00060874 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.54e-07
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 28  HCRLSLPQMEPSV-IRTGTSVHHQSSDRRHHSHQASERKLPPRILFQFRRGQSLVSIGKN 87
           H R + P    +V +  G SV HQ  DR  H  + S+RKL PR   + R G+++ S+G++
Sbjct: 77  HGRHASPNAVRAVKVSGGHSVQHQRRDRGDHRAEPSKRKLLPRTPTETRGGEAVESVGED 136

Query: 88  MDESGRQNNTGGEGFNHEENLLL 109
           +DE+G +N+TG E  + EE +L 
Sbjct: 137 VDETGGENDTGSERLDDEEGILF 159

The following BLAST results are available for this feature:

BLAST of MC11g_new0152.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0152.1 vs. NCBI nr


Match Name	E-value	Identity	Description
GER48244.1	1.41e-12	44.87	lethal giant larvae protein homolog 1 [Striga asiatica]	[more]
GER53990.1	4.40e-12	45.45	homolog of histone chaperone HIRA [Striga asiatica]	[more]
OMO91903.1	5.27e-08	40.28	hypothetical protein COLO4_18028 [Corchorus olitorius]	[more]
RWV78190.1	1.14e-06	38.55	hypothetical protein GW17_00060874 [Ensete ventricosum] >RWW42833.1 hypothetical...	[more]

BLAST of MC11g_new0152.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7QSL8	6.82e-13	44.87	Lethal giant larvae protein homolog 1 OS=Striga asiatica OX=4170 GN=STAS_25398 P...	[more]
A0A5A7R9N0	2.13e-12	45.45	Homolog of histone chaperone HIRA OS=Striga asiatica OX=4170 GN=STAS_31545 PE=4 ...	[more]
A0A1R3JAN2	2.55e-08	40.28	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18028 PE=4 SV=1	[more]
A0A444BX25	5.54e-07	38.55	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00060874 PE=4 SV=1	[more]

BLAST of MC11g_new0152.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0152	MC11g_new0152	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0152.1-cds	MC11g_new0152.1-cds-MC11:6447290..6447625	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0152.1	MC11g_new0152.1-protein	polypeptide