MC11g_new0109.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0109.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing protein
Location	MC11: 4256040 .. 4258534 (+)
Sequence length	1056
RNA-Seq Expression	MC11g_new0109.1
Synteny	MC11g_new0109.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAATTCAAAAATTCAACTTTGAAGTTTAGAAAATCAAACTATATTTTAATCTAATTTAAATTTGCCAATTGTTATTTTCACAAAAGTAAAGAACAAAATCATATATAAGAGGAAAATCCGAAATAGAATTAGATGACAATACCTTGTTCCGGCGAATGTTCATTCATGCTGAGCAGAGCACCGCGATCCCGAACTCCGGTGGAGACTATGGCGTTAATTTGGAGCAGGGTTTTGACATTAGCAAAAATCGGTTCCTCCAGGATTTCGCTTCAGTTACATGAAGCTCGTTATCGATTTAGTTCGCGGGGATTCGCATCTACTGATCACTCGAATTCGAATCCTCTGCTTCTCAGGTTGCTTCAGGAGCCAAGTTCGTCTGTCAAATCCGTGCTCGATTCGCCGGAAAGTGCGTTTCTATGTAGCTCCGAAGTTTCCTGCAAATCCCTCGTTAGGTCTCTTGTATCTTCTTCGTCGCCTAAGAAGGCTCAACTGGTAACTTCACCCCCTCTTTTTCCTCCATTTTTGTTTCTGTATGGTTGTCGAATGAACCTAGGGAATGATCTTGCATAATCCTCTAATGTTGGCGAGAATTAGGAGTGAAATTCATCGATTTCTAGAAATTGGTTTCATTTTTCTACCGTTTTTTTCTTTCAATAGCTTAAATTATTGGAAAGTTTGTTTTAGGGATCAGGAGAGAACGAACGATCATGATTAACCATTTCTGGCTTGGTCAGGTTTTGGAATGGAGATTGGAGAGAATGAGCAAAGAAAATGAGGCGGATCCTGATTGCTACATCGACCTGATACGTCTTTGCGGTGAGCTTCAAAATTTCCCTCTTGCAATGCGTGTTTTTGCTGCTATGGAATTCCAAGGAGTTAAACCAACGGCGATTGTTTTCAATTCACTTATGGAGGCTTGTTTATCTTCACATAATATGATTACTGCCTTCAGTATATTCGAAGTAATGAAAAACTCTGAAAGTTATAAACCCAATGCCGACACTTTCACTTCTTTCATTTCGGCATTTGCCAGATTGTGTGATGTTGATTCCATGCAAGCATGGTACTCAGCCAAAAGAGCTTTTGGATTCTCTCCTGACCTTCAAACCTATGAATCTCTTATATATGGTAGTGTGAGATCGAAATGCTTTGACTTTGCTGTTAGATGTTTTGAGGAAATGATGATATCTGGCATTGTGCCCAACAAAATCATATTGGAGAATATGATTGAAGGGCTCTGCAAGAGGAAAAATTTTGAGGAAGTGAAGAAGTTCTTAAATATTGTGTTTGACAATGGGTGGGAGATCGATTGTACTGTGGCCAAGAAGTTCATTCGAAGAAGTTTCGATTTGGGGGCGGTGGACGGGATGGAGGAGCTGCTTACCAAGCTAAGTAAGTCGAATCTGGCTCCGGATGGCATGTCGTCGTAAATATACTGTAGAATGATAACAATGTAGGCACCATGTCCAACAGATTGGATGAAGTACAATATCCTGTTGAAAGAACCCTTAAACATGGCTTCCGGTCAAGGTAATTTGTGCTCATTTTTATAGGTGAAGCTTATGAAAGACTAGACTTGTTTATTGACTGCATGAAATGAAGTTATTTTCTTACAAAACCAACGTTTCATTTGTCAGCTGATGGCCACCGGAAAGCTGTTTTAACCGAAAGGGATTGGATTTGGTGATAGAGAACACGAAAATAGCTGCAGTTTCATATGCATCATGTTTGGCAGAGCAAGCAAGTTGTGCTTCCTTTGACATGCCTTTCAGATTAAGGATAGTCTCCTCTGGGACGGGTTAGCGTGTCTCGAACCTTTAACCAAAAGTACAATCGTTCGGGTCGAGAATGAAGCCTACATACTAGTTGTTAAAGGTGTATCTATCACCATTGTTTGGTTTGGAGTGAAAGGGCATATGGAAGGTTCAAGGGGCTATCTAGTTTTGCACTGAGCCATCCCTTTTTTACTGTGGTAAGAAATGGTTCTCCTACAAATATATATACATCTTTAGGTCAGTTGGATTTGTGTATGCTTAGCACAAATAAGAAGGGCCCTTTTTTCTTCCATAAACTGAACAACAAGCGGTAAGAAGTCGGGGGATTTAACCTTCGACCTTTATCGTTGAATTATGATCGTGTTGGTAGGTTTATGTTAATCGTGTTAATTGGCTATTTTGAATGACCGTATTATTATCTGGATTGATGATATTGAATTTCATCACCCCGTTTGATCTTCTTTTTACCCGATCCTGCGATATGGGTATTCATGTCAAACCTGAGAACAAATTTAATATTAAATTTGTGAACCAAAACAAAATATTTTGAAGTTGAAGACTAGAATAACATAAATTATAAATTATAGTTCAATTCTAGCTCTGAGTGTAAATTTTTATGTTTTGAAATTATTTGACTGACTTCTGAATTAAAAATAAAATGAGGCTGCTGAAGTTGTGTTTTTTGTACGTTGTTTGTTCCTTTCTAAGATTTATTATG

mRNA sequence

ATGACAATACCTTGTTCCGGCGAATGTTCATTCATGCTGAGCAGAGCACCGCGATCCCGAACTCCGGTGGAGACTATGGCGTTAATTTGGAGCAGGGTTTTGACATTAGCAAAAATCGGTTCCTCCAGGATTTCGCTTCAGTTACATGAAGCTCGTTATCGATTTAGTTCGCGGGGATTCGCATCTACTGATCACTCGAATTCGAATCCTCTGCTTCTCAGGTTGCTTCAGGAGCCAAGTTCGTCTGTCAAATCCGTGCTCGATTCGCCGGAAAGTGCGTTTCTATGTAGCTCCGAAGTTTCCTGCAAATCCCTCGTTAGGTCTCTTGTATCTTCTTCGTCGCCTAAGAAGGCTCAACTGGTTTTGGAATGGAGATTGGAGAGAATGAGCAAAGAAAATGAGGCGGATCCTGATTGCTACATCGACCTGATACGTCTTTGCGGTGAGCTTCAAAATTTCCCTCTTGCAATGCGTGTTTTTGCTGCTATGGAATTCCAAGGAGTTAAACCAACGGCGATTGTTTTCAATTCACTTATGGAGGCTTGTTTATCTTCACATAATATGATTACTGCCTTCAGTATATTCGAAGTAATGAAAAACTCTGAAAGTTATAAACCCAATGCCGACACTTTCACTTCTTTCATTTCGGCATTTGCCAGATTGTGTGATGTTGATTCCATGCAAGCATGGTACTCAGCCAAAAGAGCTTTTGGATTCTCTCCTGACCTTCAAACCTATGAATCTCTTATATATGGTAGTGTGAGATCGAAATGCTTTGACTTTGCTGTTAGATGTTTTGAGGAAATGATGATATCTGGCATTGTGCCCAACAAAATCATATTGGAGAATATGATTGAAGGGCTCTGCAAGAGGAAAAATTTTGAGGAAGTGAAGAAGTTCTTAAATATTGTGTTTGACAATGGGTGGGAGATCGATTGTACTGTGGCCAAGAAGTTCATTCGAAGAAGTTTCGATTTGGGGGCGGTGGACGGGATGGAGGAGCTGCTTACCAAGCTAAGTAAGTCGAATCTGGCTCCGGATGGCATGTCGTCGTAA

Coding sequence (CDS)

ATGACAATACCTTGTTCCGGCGAATGTTCATTCATGCTGAGCAGAGCACCGCGATCCCGAACTCCGGTGGAGACTATGGCGTTAATTTGGAGCAGGGTTTTGACATTAGCAAAAATCGGTTCCTCCAGGATTTCGCTTCAGTTACATGAAGCTCGTTATCGATTTAGTTCGCGGGGATTCGCATCTACTGATCACTCGAATTCGAATCCTCTGCTTCTCAGGTTGCTTCAGGAGCCAAGTTCGTCTGTCAAATCCGTGCTCGATTCGCCGGAAAGTGCGTTTCTATGTAGCTCCGAAGTTTCCTGCAAATCCCTCGTTAGGTCTCTTGTATCTTCTTCGTCGCCTAAGAAGGCTCAACTGGTTTTGGAATGGAGATTGGAGAGAATGAGCAAAGAAAATGAGGCGGATCCTGATTGCTACATCGACCTGATACGTCTTTGCGGTGAGCTTCAAAATTTCCCTCTTGCAATGCGTGTTTTTGCTGCTATGGAATTCCAAGGAGTTAAACCAACGGCGATTGTTTTCAATTCACTTATGGAGGCTTGTTTATCTTCACATAATATGATTACTGCCTTCAGTATATTCGAAGTAATGAAAAACTCTGAAAGTTATAAACCCAATGCCGACACTTTCACTTCTTTCATTTCGGCATTTGCCAGATTGTGTGATGTTGATTCCATGCAAGCATGGTACTCAGCCAAAAGAGCTTTTGGATTCTCTCCTGACCTTCAAACCTATGAATCTCTTATATATGGTAGTGTGAGATCGAAATGCTTTGACTTTGCTGTTAGATGTTTTGAGGAAATGATGATATCTGGCATTGTGCCCAACAAAATCATATTGGAGAATATGATTGAAGGGCTCTGCAAGAGGAAAAATTTTGAGGAAGTGAAGAAGTTCTTAAATATTGTGTTTGACAATGGGTGGGAGATCGATTGTACTGTGGCCAAGAAGTTCATTCGAAGAAGTTTCGATTTGGGGGCGGTGGACGGGATGGAGGAGCTGCTTACCAAGCTAAGTAAGTCGAATCTGGCTCCGGATGGCATGTCGTCGTAA

Protein sequence

MTIPCSGECSFMLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPLLLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS

Homology

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BLAST of MC11g_new0109.1 vs. ExPASy Swiss-Prot
Match: Q9M302 (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-15
Identity = 54/243 (22.22%), Postives = 103/243 (42.39%), Query Frame = 0


Query: 104 SLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDLIRLCGELQNFPLAMRVFAAM 163
           +L+  L      K A  ++   +E+    N       I+++   G+++   LA      M
Sbjct: 251 ALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIE---LAFSFLTQM 310

Query: 164 EFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSESYKPNADTFTSFISAFARLCD 223
             +G  P     +SL++ C        A  ++  M      +PN   + + +  F    +
Sbjct: 311 LKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGN 370

Query: 224 VDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILEN 283
           +    + +S     G SP+++TY SLI G  +    D AV  + +M+ SG  PN ++  N
Sbjct: 371 IVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTN 430

Query: 284 MIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSN 343
           M+E LC+   F+E +  + I+              FI+   D G +D  E++  ++ + +
Sbjct: 431 MVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQH 490

Query: 344 LAP 347
             P
Sbjct: 491 RCP 490

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BLAST of MC11g_new0109.1 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-14
Identity = 58/223 (26.01%), Postives = 94/223 (42.15%), Query Frame = 0


Query: 126 LERMSK-ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLS 185
           L++M K + EAD   Y  +I      +N   A+ +F  M+ +G++P  + +NSL+  CL 
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR-CLC 302

Query: 186 SHNMITAFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQ 245
           ++   +  S            PN  TF++ I AF +   +   +  Y         PD+ 
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362

Query: 246 TYESLIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIV 305
           TY SLI G       D A   FE M+     PN +    +I+G CK K  EE  +    +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 306 FDNGWEIDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPD 348
              G   +       I+  F  G  D  +++  K+    + PD
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy Swiss-Prot
Match: Q0WMY5 (Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPR4 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-13
Identity = 70/308 (22.73%), Postives = 132/308 (42.86%), Query Frame = 0


Query: 37  AKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPLLLRLLQEPSSSVKSVLDSPESAFLC 96
           AK G  R SL++ +   R    G   T H+ +  +   + +        +LD    A + 
Sbjct: 600 AKSGDMRRSLEVFDMMRRC---GCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVS 659

Query: 97  SSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDLIRLCGELQNFPLA 156
           ++E +   +++   S     KA    E+     ++  + D   Y  L++ C +      A
Sbjct: 660 ANEHTYTKIMQGYASVGDTGKA---FEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSA 719

Query: 157 MRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSESYKPNADTFTSFIS 216
           + V   M  + +   + V+N L++      ++  A  + + MK  E  KP+  T+TSFIS
Sbjct: 720 LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK-KEGVKPDIHTYTSFIS 779

Query: 217 AFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISGIVP 276
           A ++  D++          A G  P+++TY +LI G  R+   + A+ C+EEM   GI P
Sbjct: 780 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKP 839

Query: 277 NKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRSF--DLGAVDGMEE 336
           +K +   ++  L  R +  E   +  ++         T+ K+ +      D+G      +
Sbjct: 840 DKAVYHCLLTSLLSRASIAEAYIYSGVM---------TICKEMVEAGLIVDMGTAVHWSK 891

Query: 337 LLTKLSKS 343
            L K+  S
Sbjct: 900 CLCKIEAS 891

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy Swiss-Prot
Match: Q9M9X9 (Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g06710 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-12
Identity = 51/217 (23.50%), Postives = 95/217 (43.78%), Query Frame = 0


Query: 131 KENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMIT 190
           K  + +  C I   R+CG  ++ P     F   +    +P  + + +L++    SH +  
Sbjct: 600 KAGQVEKACQI-FERMCGS-KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 659

Query: 191 AFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLI 250
           A  + + M + E  +PN   + + I    ++  +D  Q   +     GF   L TY SLI
Sbjct: 660 ARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 719

Query: 251 YGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWE 310
               + K  D A +   +M+ +   PN +I   MI+GLCK    +E  K + ++ + G +
Sbjct: 720 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 779

Query: 311 IDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPD 348
            +       I     +G ++   ELL ++    +AP+
Sbjct: 780 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy Swiss-Prot
Match: Q9LYT2 (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana OX=3702 GN=At3g59040 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-12
Identity = 45/166 (27.11%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 131 KENEADPD--CYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNM 190
           + ++  PD   Y  LI+  G  +    A+ VF  M   GV+PT   +N L++A   S  +
Sbjct: 306 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 365

Query: 191 ITAFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYES 250
             A ++F+ M+    + P+  ++T+ +SA+    D++  + ++   +  GF P++ TY +
Sbjct: 366 EQAKTVFKSMRRDRIF-PDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 425

Query: 251 LIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNF 295
           LI G  ++   +  +  +E+M +SGI  N+ IL  +++   + KNF
Sbjct: 426 LIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNF 470

[Close]

BLAST of MC11g_new0109.1 vs. NCBI nr
Match: XP_022148798.1 (pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia])

HSP 1 Score: 666 bits (1719), Expect = 4.57e-241
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 12  MLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPL 71
           MLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPL
Sbjct: 1   MLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPL 60

Query: 72  LLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSK 131
           LLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSK
Sbjct: 61  LLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSK 120

Query: 132 ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITA 191
           ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITA
Sbjct: 121 ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITA 180

Query: 192 FSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIY 251
           FSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIY
Sbjct: 181 FSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIY 240

Query: 252 GSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEI 311
           GSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEI
Sbjct: 241 GSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEI 300

Query: 312 DCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS 351
           DCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS
Sbjct: 301 DCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS 340

[Close]

BLAST of MC11g_new0109.1 vs. NCBI nr
Match: XP_038897030.1 (pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 461 bits (1185), Expect = 5.71e-160
Identity = 238/326 (73.01%), Postives = 272/326 (83.44%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSN--SNPLLLRLLQEPSSSV 85
           MAL   RVL LA  GSSRI LQL +A +    R F STD SN  SNPLLLRLLQEP+SSV
Sbjct: 1   MALTGKRVLALAGSGSSRIPLQLQQAHFPLCFRRFVSTDPSNPISNPLLLRLLQEPTSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDS E+AFLCSS +S  +LV SL+SSSSPKKAQLVLEW+LE+MSKENE DPD YIDL
Sbjct: 61  KSVLDSQENAFLCSSRLSFNTLVTSLISSSSPKKAQLVLEWKLEKMSKENERDPDFYIDL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           +RLCGELQN PLAM VF  MEFQGVKPT   FNSL+EAC+SS NMITAFSIFEVMKNSES
Sbjct: 121 MRLCGELQNSPLAMCVFTVMEFQGVKPTVTAFNSLIEACISSRNMITAFSIFEVMKNSES 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
           YKPN+DTF  FI  FA+L DV+SMQAWYSAK+AFGFSPDL+TYE+LI+GSV+SKCFDFAV
Sbjct: 181 YKPNSDTFYHFIFVFAKLHDVNSMQAWYSAKKAFGFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           +CFEEMM+SGIVPN IILENM+EGLCKRKN +EVKKFLN+V D GWEI+  V  KF    
Sbjct: 241 KCFEEMMLSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVVAKFFPIW 300

Query: 326 FDLGAVDGMEELLTKLSKSNLAPDGM 349
           F+ G ++GMEE+LTK++KSN A +G+
Sbjct: 301 FESGELEGMEEILTKINKSNSAVNGI 326

[Close]

BLAST of MC11g_new0109.1 vs. NCBI nr
Match: XP_022975914.1 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima] >XP_022975915.1 pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 448 bits (1153), Expect = 3.64e-155
Identity = 231/319 (72.41%), Postives = 268/319 (84.01%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA+  +RVL LAK GSSRI L+L EA YR   R F STD SNS  NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDSPE+ FL SS +S K+LV SL+SSSSPKKAQL LEWRLE+M+KENE DPD YIDL
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCGELQN PLAMRVF AMEFQGVKPT   FNSL+E C+SSHNMITAFS+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
           +KPNADTF  FISAFA+L DV+SM+AWYSAKRAF FS DL+TYE+LI+GSV SKCFDFAV
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           RCF+EMM+SGIVPN IIL+NM+EG CKRK+ +E+KKFL +V D GWEI   V +KFI   
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 326 FDLGAVDGMEELLTKLSKS 342
           F+ G  +GMEE+LTKL+++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of MC11g_new0109.1 vs. NCBI nr
Match: KAG7024539.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 447 bits (1149), Expect = 1.48e-154
Identity = 230/319 (72.10%), Postives = 268/319 (84.01%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA+  +RVL LAK GSSR+ L+L E  YR   R F STD SNS  NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDSPE+AFL SS +S K+LV SL+SSSSPKKAQL LEWRLE+MSKENE DPD YIDL
Sbjct: 61  KSVLDSPENAFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCGELQN PLAMRVF AMEFQGVKPT   FNSL+E C+SSHNMITAFS+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
            KPNADTF  FISAFA+  DV+SM+AWYSAKRAF FS DL+TYE+LI+GSV+SKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           RCF+EMM+SGIVPN IIL+NM+EG CKRK+ +E+KKFL +V D GWEI+  V +KFI   
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 326 FDLGAVDGMEELLTKLSKS 342
           F+ G  +GMEE+LTKL+++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of MC11g_new0109.1 vs. NCBI nr
Match: XP_023534997.1 (pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445 bits (1144), Expect = 8.50e-154
Identity = 229/319 (71.79%), Postives = 267/319 (83.70%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA+  +RVL LAK GSSRI L+  EA YR   R F STD SNS  NP +LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRFQEAHYRCICRRFVSTDPSNSILNPQVLRLIQEPSSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDSPE+AFL +S +S K+LV SL+SSSSPKKAQL LEWRLE+MSKENE DPD YIDL
Sbjct: 61  KSVLDSPENAFLGNSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCGELQN PLAMRVF AMEFQGVKPT   FNSL+E C+SSHNMITAFS+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
            KPNADTF  FISAFA+  DV+SM+AWYSAKRAF FS DL+TYE+LI+GSV+SKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRLDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           RCF+EMM+SGIVPN IIL+NM+EG CKRK+ +E+KKFL +V D GWEI+  V +KFI   
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 326 FDLGAVDGMEELLTKLSKS 342
           F+ G  +GMEE+LTKL+++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy TrEMBL
Match: A0A6J1D545 (pentatricopeptide repeat-containing protein At3g48810-like OS=Momordica charantia OX=3673 GN=LOC111017344 PE=4 SV=1)

HSP 1 Score: 666 bits (1719), Expect = 2.21e-241
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 12  MLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPL 71
           MLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPL
Sbjct: 1   MLSRAPRSRTPVETMALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPL 60

Query: 72  LLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSK 131
           LLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSK
Sbjct: 61  LLRLLQEPSSSVKSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSK 120

Query: 132 ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITA 191
           ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITA
Sbjct: 121 ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITA 180

Query: 192 FSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIY 251
           FSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIY
Sbjct: 181 FSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIY 240

Query: 252 GSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEI 311
           GSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEI
Sbjct: 241 GSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEI 300

Query: 312 DCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS 351
           DCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS
Sbjct: 301 DCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPDGMSS 340

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy TrEMBL
Match: A0A6J1II25 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476476 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 1.76e-155
Identity = 231/319 (72.41%), Postives = 268/319 (84.01%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA+  +RVL LAK GSSRI L+L EA YR   R F STD SNS  NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDSPE+ FL SS +S K+LV SL+SSSSPKKAQL LEWRLE+M+KENE DPD YIDL
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCGELQN PLAMRVF AMEFQGVKPT   FNSL+E C+SSHNMITAFS+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
           +KPNADTF  FISAFA+L DV+SM+AWYSAKRAF FS DL+TYE+LI+GSV SKCFDFAV
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           RCF+EMM+SGIVPN IIL+NM+EG CKRK+ +E+KKFL +V D GWEI   V +KFI   
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 326 FDLGAVDGMEELLTKLSKS 342
           F+ G  +GMEE+LTKL+++
Sbjct: 301 FESGEAEGMEEILTKLNEA 319

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy TrEMBL
Match: A0A5D3E5Z9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006320 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 3.22e-150
Identity = 225/328 (68.60%), Postives = 267/328 (81.40%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA    RVLTLA+  S  I LQ  +  Y    RGF STD S S  NPLLL+LLQEP+SSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDS E+ FLCSS +S   LV SL+SSS PKKAQLVLEW+LE+MSK NE+DPD YI+L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCG+L++  LAMRVF  MEFQGVKPT   FNSL+EAC+SSHNMITAF IFEVMKNS++
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
           +KPN DTF  FIS F++L DV+SMQAWYSAK+AF FSPDL+TYE+LI+GSV+SKCFDFAV
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           +CFEEMM+S IVPN IILENM+EGLCKRKNF+EVKKFLN+V DNGWEI+  V +KFI   
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 326 FDLGAVDGMEELLTKLSKSNLAPDGMSS 351
           F+ G ++GM+E+LTK++KSN A D + S
Sbjct: 301 FESGELEGMKEILTKINKSNSATDDIQS 328

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy TrEMBL
Match: A0A1S3CS56 (pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=3656 GN=LOC103503719 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 3.22e-150
Identity = 225/328 (68.60%), Postives = 267/328 (81.40%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA    RVLTLA+  S  I LQ  +  Y    RGF STD S S  NPLLL+LLQEP+SSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDS E+ FLCSS +S   LV SL+SSS PKKAQLVLEW+LE+MSK NE+DPD YI+L
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCG+L++  LAMRVF  MEFQGVKPT   FNSL+EAC+SSHNMITAF IFEVMKNS++
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
           +KPN DTF  FIS F++L DV+SMQAWYSAK+AF FSPDL+TYE+LI+GSV+SKCFDFAV
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           +CFEEMM+S IVPN IILENM+EGLCKRKNF+EVKKFLN+V DNGWEI+  V +KFI   
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 326 FDLGAVDGMEELLTKLSKSNLAPDGMSS 351
           F+ G ++GM+E+LTK++KSN A D + S
Sbjct: 301 FESGELEGMKEILTKINKSNSATDDIQS 328

[Close]

BLAST of MC11g_new0109.1 vs. ExPASy TrEMBL
Match: A0A6J1FC94 (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442788 PE=4 SV=1)

HSP 1 Score: 426 bits (1094), Expect = 1.28e-146
Identity = 222/313 (70.93%), Postives = 256/313 (81.79%), Query Frame = 0


Query: 26  MALIWSRVLTLAKIGSSRISLQLHEARYRFSSRGFASTDHSNS--NPLLLRLLQEPSSSV 85
           MA+  +RVL LAK GSSR+ L+L E  YR   R F STD SNS  NPL+LRL+QEPSSSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 86  KSVLDSPESAFLCSSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDL 145
           KSVLDSPE+AFL SS +S K+LV SL+SSSSPKKAQL LEWRLE+MSKENE DPD YIDL
Sbjct: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 146 IRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSES 205
           IRLCGELQN PLAMRVF AMEFQGV+PT   FNSL+E C+SSHNMITAFS+FE+MKNSES
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 206 YKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAV 265
            KPNADTF  FISAFA+  DV+SM+AWYSA RAF FS DL+TYE+LI+GSV+SKCFDFAV
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 266 RCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRS 325
           RCF+EMM+SGIVPN IIL+NM+EG CKRK+ +E+KKFL +V D GWEI+  V +KFI   
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 326 FDLGAVDGMEELL 336
           F+ G   G    L
Sbjct: 301 FESGRRKGWRRSL 313

[Close]

BLAST of MC11g_new0109.1 vs. TAIR 10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-16
Identity = 54/243 (22.22%), Postives = 103/243 (42.39%), Query Frame = 0


Query: 104 SLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDLIRLCGELQNFPLAMRVFAAM 163
           +L+  L      K A  ++   +E+    N       I+++   G+++   LA      M
Sbjct: 251 ALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIE---LAFSFLTQM 310

Query: 164 EFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSESYKPNADTFTSFISAFARLCD 223
             +G  P     +SL++ C        A  ++  M      +PN   + + +  F    +
Sbjct: 311 LKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGN 370

Query: 224 VDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILEN 283
           +    + +S     G SP+++TY SLI G  +    D AV  + +M+ SG  PN ++  N
Sbjct: 371 IVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTN 430

Query: 284 MIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSN 343
           M+E LC+   F+E +  + I+              FI+   D G +D  E++  ++ + +
Sbjct: 431 MVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQH 490

Query: 344 LAP 347
             P
Sbjct: 491 RCP 490

[Close]

BLAST of MC11g_new0109.1 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-15
Identity = 58/223 (26.01%), Postives = 94/223 (42.15%), Query Frame = 0


Query: 126 LERMSK-ENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLS 185
           L++M K + EAD   Y  +I      +N   A+ +F  M+ +G++P  + +NSL+  CL 
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR-CLC 302

Query: 186 SHNMITAFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQ 245
           ++   +  S            PN  TF++ I AF +   +   +  Y         PD+ 
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362

Query: 246 TYESLIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIV 305
           TY SLI G       D A   FE M+     PN +    +I+G CK K  EE  +    +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 306 FDNGWEIDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPD 348
              G   +       I+  F  G  D  +++  K+    + PD
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

[Close]

BLAST of MC11g_new0109.1 vs. TAIR 10
Match: AT5G04810.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 76.3 bits (186), Expect = 5.6e-14
Identity = 70/308 (22.73%), Postives = 132/308 (42.86%), Query Frame = 0


Query: 37  AKIGSSRISLQLHEARYRFSSRGFASTDHSNSNPLLLRLLQEPSSSVKSVLDSPESAFLC 96
           AK G  R SL++ +   R    G   T H+ +  +   + +        +LD    A + 
Sbjct: 600 AKSGDMRRSLEVFDMMRRC---GCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVS 659

Query: 97  SSEVSCKSLVRSLVSSSSPKKAQLVLEWRLERMSKENEADPDCYIDLIRLCGELQNFPLA 156
           ++E +   +++   S     KA    E+     ++  + D   Y  L++ C +      A
Sbjct: 660 ANEHTYTKIMQGYASVGDTGKA---FEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSA 719

Query: 157 MRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMITAFSIFEVMKNSESYKPNADTFTSFIS 216
           + V   M  + +   + V+N L++      ++  A  + + MK  E  KP+  T+TSFIS
Sbjct: 720 LAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK-KEGVKPDIHTYTSFIS 779

Query: 217 AFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISGIVP 276
           A ++  D++          A G  P+++TY +LI G  R+   + A+ C+EEM   GI P
Sbjct: 780 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKP 839

Query: 277 NKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEIDCTVAKKFIRRSF--DLGAVDGMEE 336
           +K +   ++  L  R +  E   +  ++         T+ K+ +      D+G      +
Sbjct: 840 DKAVYHCLLTSLLSRASIAEAYIYSGVM---------TICKEMVEAGLIVDMGTAVHWSK 891

Query: 337 LLTKLSKS 343
            L K+  S
Sbjct: 900 CLCKIEAS 891

[Close]

BLAST of MC11g_new0109.1 vs. TAIR 10
Match: AT1G06710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 7.4e-14
Identity = 51/217 (23.50%), Postives = 95/217 (43.78%), Query Frame = 0


Query: 131 KENEADPDCYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNMIT 190
           K  + +  C I   R+CG  ++ P     F   +    +P  + + +L++    SH +  
Sbjct: 600 KAGQVEKACQI-FERMCGS-KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 659

Query: 191 AFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLI 250
           A  + + M + E  +PN   + + I    ++  +D  Q   +     GF   L TY SLI
Sbjct: 660 ARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 719

Query: 251 YGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWE 310
               + K  D A +   +M+ +   PN +I   MI+GLCK    +E  K + ++ + G +
Sbjct: 720 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 779

Query: 311 IDCTVAKKFIRRSFDLGAVDGMEELLTKLSKSNLAPD 348
            +       I     +G ++   ELL ++    +AP+
Sbjct: 780 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813

[Close]

BLAST of MC11g_new0109.1 vs. TAIR 10
Match: AT3G59040.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-13
Identity = 45/166 (27.11%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 131 KENEADPD--CYIDLIRLCGELQNFPLAMRVFAAMEFQGVKPTAIVFNSLMEACLSSHNM 190
           + ++  PD   Y  LI+  G  +    A+ VF  M   GV+PT   +N L++A   S  +
Sbjct: 313 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 372

Query: 191 ITAFSIFEVMKNSESYKPNADTFTSFISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYES 250
             A ++F+ M+    + P+  ++T+ +SA+    D++  + ++   +  GF P++ TY +
Sbjct: 373 EQAKTVFKSMRRDRIF-PDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 432

Query: 251 LIYGSVRSKCFDFAVRCFEEMMISGIVPNKIILENMIEGLCKRKNF 295
           LI G  ++   +  +  +E+M +SGI  N+ IL  +++   + KNF
Sbjct: 433 LIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNF 477

The following BLAST results are available for this feature:

BLAST of MC11g_new0109.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M302	2.9e-15	22.22	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]
Q9LQ14	1.4e-14	26.01	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q0WMY5	7.9e-13	22.73	Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidop...	[more]
Q9M9X9	1.0e-12	23.50	Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidop...	[more]
Q9LYT2	3.0e-12	27.11	Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC11g_new0109.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148798.1	4.57e-241	100.00	pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia]	[more]
XP_038897030.1	5.71e-160	73.01	pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benin...	[more]
XP_022975914.1	3.64e-155	72.41	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita...	[more]
KAG7024539.1	1.48e-154	72.10	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_023534997.1	8.50e-154	71.79	pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucur...	[more]

BLAST of MC11g_new0109.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D545	2.21e-241	100.00	pentatricopeptide repeat-containing protein At3g48810-like OS=Momordica charanti...	[more]
A0A6J1II25	1.76e-155	72.41	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbi...	[more]
A0A5D3E5Z9	3.22e-150	68.60	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CS56	3.22e-150	68.60	pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=36...	[more]
A0A6J1FC94	1.28e-146	70.93	pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor...	[more]

BLAST of MC11g_new0109.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48810.1	2.1e-16	22.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62930.1	1.0e-15	26.01	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G04810.1	5.6e-14	22.73	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G06710.1	7.4e-14	23.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G59040.2	2.1e-13	27.11	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 284..302 e-value: 0.7 score: 10.3 coord: 245..274 e-value: 0.024 score: 14.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 170..220 e-value: 1.8E-7 score: 31.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 245..277 e-value: 2.8E-6 score: 25.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 8.769097
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 242..276 score: 10.259834
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 142..350 e-value: 2.0E-35 score: 124.6
None	No IPR available	PANTHER	PTHR45613:SF360	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 54..343
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 54..343

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0109	MC11g_new0109	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0109.1-cds	MC11g_new0109.1-cds-MC11:4256174..4256533	CDS
MC11g_new0109.1-cds	MC11g_new0109.1-cds-MC11:4256776..4257471	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0109.1	MC11g_new0109.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding