MC11g1203.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1203.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box domain-containing protein
Location	MC11: 11743136 .. 11743414 (+)
Sequence length	279
RNA-Seq Expression	MC11g1203.1
Synteny	MC11g1203.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCTTATGGATTTGCATTGGATGAGGTTTCTGGCCGATACAAAGTCATTCACTTGTTTCGTGATTCACTGATGTTCATTGGTTGCGAGATATTTATTCTCGGGACTGAAGGGTGGAGAGCTGTGGATGGGCCTTCTTTTGGTCTTTTTGATTGGCTTGGATATAGACCTGTTGCAGCCATTGGAGCTCTGCACTGGATCCCGCAAGTTAATCACAGTGATTGCATCATGTCGTTAGAAATCGAGAAGGAAAAGTTCCATACAGTCCCACTTCCAAAC

mRNA sequence

GAATCTTATGGATTTGCATTGGATGAGGTTTCTGGCCGATACAAAGTCATTCACTTGTTTCGTGATTCACTGATGTTCATTGGTTGCGAGATATTTATTCTCGGGACTGAAGGGTGGAGAGCTGTGGATGGGCCTTCTTTTGGTCTTTTTGATTGGCTTGGATATAGACCTGTTGCAGCCATTGGAGCTCTGCACTGGATCCCGCAAGTTAATCACAGTGATTGCATCATGTCGTTAGAAATCGAGAAGGAAAAGTTCCATACAGTCCCACTTCCAAAC

Coding sequence (CDS)

GAATCTTATGGATTTGCATTGGATGAGGTTTCTGGCCGATACAAAGTCATTCACTTGTTTCGTGATTCACTGATGTTCATTGGTTGCGAGATATTTATTCTCGGGACTGAAGGGTGGAGAGCTGTGGATGGGCCTTCTTTTGGTCTTTTTGATTGGCTTGGATATAGACCTGTTGCAGCCATTGGAGCTCTGCACTGGATCCCGCAAGTTAATCACAGTGATTGCATCATGTCGTTAGAAATCGAGAAGGAAAAGTTCCATACAGTCCCACTTCCAAAC

Protein sequence

ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAAIGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN

Homology

[Close]

BLAST of MC11g1203.1 vs. NCBI nr
Match: XP_038899453.1 (F-box protein CPR1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 181 bits (458), Expect = 3.59e-53
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D VSGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGPSFGLF WLGYRPV A
Sbjct: 209 ESYGFAYDNVSGRYKVVHLFRDALMYISCEIFILGTEKWRAVDGPSFGLFGWLGYRPVEA 268

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHSDCI+SLEIE EKF T+PLPN
Sbjct: 269 IGALHWIPQVNHSDCIVSLEIENEKFRTIPLPN 301

[Close]

BLAST of MC11g1203.1 vs. NCBI nr
Match: XP_038899452.1 (F-box protein CPR1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 181 bits (458), Expect = 4.91e-53
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D VSGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGPSFGLF WLGYRPV A
Sbjct: 223 ESYGFAYDNVSGRYKVVHLFRDALMYISCEIFILGTEKWRAVDGPSFGLFGWLGYRPVEA 282

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHSDCI+SLEIE EKF T+PLPN
Sbjct: 283 IGALHWIPQVNHSDCIVSLEIENEKFRTIPLPN 315

[Close]

BLAST of MC11g1203.1 vs. NCBI nr
Match: XP_038899451.1 (F-box protein CPR1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 181 bits (458), Expect = 1.72e-52
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D VSGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGPSFGLF WLGYRPV A
Sbjct: 283 ESYGFAYDNVSGRYKVVHLFRDALMYISCEIFILGTEKWRAVDGPSFGLFGWLGYRPVEA 342

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHSDCI+SLEIE EKF T+PLPN
Sbjct: 343 IGALHWIPQVNHSDCIVSLEIENEKFRTIPLPN 375

[Close]

BLAST of MC11g1203.1 vs. NCBI nr
Match: XP_004139751.2 (F-box protein CPR1 [Cucumis sativus] >XP_031745021.1 F-box protein CPR1 [Cucumis sativus] >KGN44469.1 hypothetical protein Csa_016295 [Cucumis sativus])

HSP 1 Score: 176 bits (445), Expect = 3.11e-51
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D +SGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGP FGLF W GY+PV A
Sbjct: 209 ESYGFAYDNISGRYKVVHLFRDALMYISCEIFILGTENWRAVDGPPFGLFGWFGYKPVEA 268

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHSDCI SLEIE EKF T+PLPN
Sbjct: 269 IGALHWIPQVNHSDCIASLEIENEKFQTIPLPN 301

[Close]

BLAST of MC11g1203.1 vs. NCBI nr
Match: KAA0038162.1 (F-box protein CPR30-like [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 1.86e-50
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D VSGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGP FGLF W GY+PV A
Sbjct: 197 ESYGFAYDYVSGRYKVVHLFRDALMYISCEIFILGTEKWRAVDGPPFGLFGWFGYKPVEA 256

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHS+CI+SLEIE EKF T+PLPN
Sbjct: 257 IGALHWIPQVNHSNCIVSLEIENEKFQTIPLPN 289

[Close]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL
Match: A0A0A0K6D7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G299340 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 1.51e-51
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D +SGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGP FGLF W GY+PV A
Sbjct: 209 ESYGFAYDNISGRYKVVHLFRDALMYISCEIFILGTENWRAVDGPPFGLFGWFGYKPVEA 268

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHSDCI SLEIE EKF T+PLPN
Sbjct: 269 IGALHWIPQVNHSDCIASLEIENEKFQTIPLPN 301

[Close]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL
Match: A0A5A7T3V1 (F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold109G00090 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 9.02e-51
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D VSGRYKV+HLFRD+LM+I CEIFILGTE WRAVDGP FGLF W GY+PV A
Sbjct: 197 ESYGFAYDYVSGRYKVVHLFRDALMYISCEIFILGTEKWRAVDGPPFGLFGWFGYKPVEA 256

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHS+CI+SLEIE EKF T+PLPN
Sbjct: 257 IGALHWIPQVNHSNCIVSLEIENEKFQTIPLPN 289

[Close]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL
Match: A0A6J1F6A4 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442732 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.42e-50
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D+V G+YKV+HLFRD LM+I CEIFI+GT+ WRAVDGPSFGLF WLG+RPV A
Sbjct: 202 ESYGFAYDDVLGQYKVVHLFRDELMYISCEIFIIGTKKWRAVDGPSFGLFGWLGFRPVEA 261

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHSDCI+SLEIE EKF T+PLPN
Sbjct: 262 IGALHWIPQVNHSDCIVSLEIETEKFQTIPLPN 294

[Close]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL
Match: A0A1S3CGB1 (F-box protein CPR30-like OS=Cucumis melo OX=3656 GN=LOC103500415 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 5.27e-50
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFA D VSGRYKV+HLFRD+L++I CEIFILGTE WRAVDGP FGLF W GY+PV A
Sbjct: 209 ESYGFAYDYVSGRYKVVHLFRDALLYISCEIFILGTEKWRAVDGPPFGLFGWFGYKPVEA 268

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLPN 93
           IGALHWIPQVNHS+CI+SLEIE EKF T+PLPN
Sbjct: 269 IGALHWIPQVNHSNCIVSLEIENEKFQTIPLPN 301

[Close]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL
Match: A0A5N6R8Q7 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012989 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 8.66e-43
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1   ESYGFALDEVSGRYKVIHLFRDSLMFIGCEIFILGTEGWRAVDGPSFGLFDWLGYRPVAA 60
           ESYGFAL  V+G YKV HLFRD L F+ CEI ILGT  WR V+GPSFGLF W GY PV+A
Sbjct: 184 ESYGFALSNVTGEYKVAHLFRDELGFLSCEILILGTRLWREVNGPSFGLFSWFGYMPVSA 243

Query: 61  IGALHWIPQVNHSDCIMSLEIEKEKFHTVPLP 92
           IGALHW+P ++HSD I+S+E++KEKFHT+PLP
Sbjct: 244 IGALHWVPHIDHSDYIVSMEVDKEKFHTIPLP 275

The following BLAST results are available for this feature:

BLAST of MC11g1203.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1203.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899453.1	3.59e-53	86.02	F-box protein CPR1-like isoform X3 [Benincasa hispida]	[more]
XP_038899452.1	4.91e-53	86.02	F-box protein CPR1-like isoform X2 [Benincasa hispida]	[more]
XP_038899451.1	1.72e-52	86.02	F-box protein CPR1-like isoform X1 [Benincasa hispida]	[more]
XP_004139751.2	3.11e-51	81.72	F-box protein CPR1 [Cucumis sativus] >XP_031745021.1 F-box protein CPR1 [Cucumis...	[more]
KAA0038162.1	1.86e-50	81.72	F-box protein CPR30-like [Cucumis melo var. makuwa]	[more]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D7	1.51e-51	81.72	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G299340 PE=4 ...	[more]
A0A5A7T3V1	9.02e-51	81.72	F-box protein CPR30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1F6A4	1.42e-50	80.65	F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442732 PE=4 SV=1	[more]
A0A1S3CGB1	5.27e-50	80.65	F-box protein CPR30-like OS=Cucumis melo OX=3656 GN=LOC103500415 PE=4 SV=1	[more]
A0A5N6R8Q7	8.66e-43	69.57	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012989 P...	[more]

BLAST of MC11g1203.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47993:SF72	F-BOX PROTEIN CPR30-LIKE ISOFORM X1	coord: 1..92
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 1..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g1203	MC11g1203	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g1203.1-cds	MC11g1203.1-cds-MC11:11743136..11743414	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g1203.1	MC11g1203.1-protein	polypeptide