|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. TTTTCCGACAGTTCCAGAAAGCTCAAACCACGAAGAAGCCCGATCTCCGACGGAATTCTCCCGGTGAAGTTGTTCGACCCGAGCCGCAAGCGAGTTAAGCTGCTACAATTGCCAAGATTCCGAGGAATTTCACCGGAAAGTCGATTGGATATCAACAACAACTGGCTCAAGTTCTTGAGATTGAACACAGAATCTGGAATCGATCCG mRNA sequence TTTTCCGACAGTTCCAGAAAGCTCAAACCACGAAGAAGCCCGATCTCCGACGGAATTCTCCCGGTGAAGTTGTTCGACCCGAGCCGCAAGCGAGTTAAGCTGCTACAATTGCCAAGATTCCGAGGAATTTCACCGGAAAGTCGATTGGATATCAACAACAACTGGCTCAAGTTCTTGAGATTGAACACAGAATCTGGAATCGATCCG Coding sequence (CDS) TTTTCCGACAGTTCCAGAAAGCTCAAACCACGAAGAAGCCCGATCTCCGACGGAATTCTCCCGGTGAAGTTGTTCGACCCGAGCCGCAAGCGAGTTAAGCTGCTACAATTGCCAAGATTCCGAGGAATTTCACCGGAAAGTCGATTGGATATCAACAACAACTGGCTCAAGTTCTTGAGATTGAACACAGAATCTGGAATCGATCCG Protein sequence FSDSSRKLKPRRSPISDGILPVKLFDPSRKRVKLLQLPRFRGISPESRLDINNNWLKFLRLNTESGIDP
Homology
BLAST of MC11g1181.1 vs. NCBI nr
Match: KAG8638095.1 (hypothetical protein MANES_15G191810v8 [Manihot esculenta]) HSP 1 Score: 53.1 bits (126), Expect = 1.39e-06 Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query: 1 FSDSSRKLKPRRSPISDGILPVKLFDPSRKRVKLLQLPRFRGISPESRLDINNNWLKF 58
FSD SRKL+ RSPIS GI P+ L SR+R++ Q P GI PE L I ++++F
Sbjct: 87 FSDKSRKLRFFRSPISFGISPLILLLTSRRRIRETQFPTSGGIQPEMSLAIKRSFVRF 144
BLAST of MC11g1181.1 vs. NCBI nr
Match: KAG6679053.1 (hypothetical protein I3842_14G111600, partial [Carya illinoinensis]) HSP 1 Score: 45.4 bits (106), Expect = 5.31e-04 Identity = 25/69 (36.23%), Postives = 36/69 (52.17%), Query Frame = 0
Query: 1 FSDSSRKLKPRRSPISDGILPVKLFDPSRKRVKLLQLPRFRGISPESRLDINNNWLKFLR 60
F + R KP+ GI+P K F P+ + ++QLPR GISP++ +N +FLR
Sbjct: 28 FISTRRSKKPKLG----GIIPWKKFPPTNRISSVMQLPRLLGISPDNMFPEISNLPRFLR 87
Query: 61 LNTESGIDP 69
T G P
Sbjct: 88 FPTSMGSGP 92
BLAST of MC11g1181.1 vs. NCBI nr
Match: KAG7947744.1 (hypothetical protein I3843_14G109100 [Carya illinoinensis]) HSP 1 Score: 45.4 bits (106), Expect = 7.24e-04 Identity = 25/69 (36.23%), Postives = 36/69 (52.17%), Query Frame = 0
Query: 1 FSDSSRKLKPRRSPISDGILPVKLFDPSRKRVKLLQLPRFRGISPESRLDINNNWLKFLR 60
F + R KP+ GI+P K F P+ + ++QLPR GISP++ +N +FLR
Sbjct: 44 FISTRRSKKPKLG----GIIPWKKFPPTNRISSVMQLPRLLGISPDNMFPKISNLPRFLR 103
Query: 61 LNTESGIDP 69
T G P
Sbjct: 104 FPTSMGSGP 108
BLAST of MC11g1181.1 vs. ExPASy TrEMBL
Match: A0A383B562 (Uncharacterized protein OS=marine metagenome OX=408172 GN=METZ01_LOCUS467794 PE=4 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 3.50e-04 Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 0
Query: 5 SRKLKPRRSPISDGILPVKLFDPSRKRVKLLQLPRFRGISPESRLDINNNWLKFLRLNTE 64
S K++ R PISDGI PV +V+L++ P GI P S L + +N ++ +R
Sbjct: 20 SNKVRLVRFPISDGIEPVSSLFLKSNKVRLVRFPISDGIEPVSSLFLKSNKVRLVRFPIS 79
Query: 65 SGIDP 69
GI+P
Sbjct: 80 DGIEP 84
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG8638095.1 | 1.39e-06 | 48.28 | hypothetical protein MANES_15G191810v8 [Manihot esculenta] | [more] |
| KAG6679053.1 | 5.31e-04 | 36.23 | hypothetical protein I3842_14G111600, partial [Carya illinoinensis] | [more] |
| KAG7947744.1 | 7.24e-04 | 36.23 | hypothetical protein I3843_14G109100 [Carya illinoinensis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A383B562 | 3.50e-04 | 36.92 | Uncharacterized protein OS=marine metagenome OX=408172 GN=METZ01_LOCUS467794 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| MC11g1181 | MC11g1181 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MC11g1181.1-cds | MC11g1181.1-cds-MC11:10811260..10811466 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MC11g1181.1 | MC11g1181.1-protein | polypeptide |
|
