MC11g0949.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0949.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	MC11: 8078365 .. 8079222 (-)
Sequence length	654
RNA-Seq Expression	MC11g0949.1
Synteny	MC11g0949.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTCTCGCAAATTTAAACGGCGTCTCAGACAAATTCTCCGCCATTCCCAAGCTTCCAAAGCTTCAAAACCCTCGGAAGAGACTCAAAATAATTGGGTTTCTCGGGAAACAAACAGAGGTTTCTTCTCATCACAGCTCATTCACAAGAAGATTGGCTTTAACCAGCATCGTCTCTGTTGCTCTGTTTGGCAACGCATCCGTCGAGATCGCTTCCGCTAACGAGTACTGGCTCGATGGCCCTTTGCCTGTGCCGTCTGTTTACAACAGTAAGCTAGCTTTCTGATTGAAGAGTTTTGAAGCTTTCTGTTTCTGAGCTTGTTTCTTTATCCGGGTGCAACTCGAAATCGAAAAAAATCGAGGACTGACTCGAATGAATTTCTTGTTACAGACATTGCGAATGAGAAGACGGGGACCCGATCGTTTCTGAAGACGGGGATTTACATAGCCAACATAGGGACAGAAGGAAGAAAATATAGACTAAAGAGATATGCCTTTGATCTTCTGGCTATGGCGGATTTGATCGGGAAAGATACTTTGAACTATGTAAGGAAGTATCTTCGACTGAAATCGACTTTCATGTACTACGATTTCGACAATGTCATCTCGGCAGCTGCAGATGGTGAGAAGCAGCCTCTAACCGAGCTTGCGAACAGATTGTTCGACAACTTCGAAAAGGTAAAAAGACGAGAAAGTTTACAAATTTCTGCAAGTAGTCTGCAGATTTTCAAGCTGAAGTAGCTTGTTTTGTGTTTTGCAGCTTGAAGATGCAGCAAAACAGAAGAATCTGAGTGAAACTGAATCCTATTATCAGCAGACAACTCCTATACTTCAAGAAGTCATGGATAGAATGGCT

mRNA sequence

ATGGCTCGTCTCGCAAATTTAAACGGCGTCTCAGACAAATTCTCCGCCATTCCCAAGCTTCCAAAGCTTCAAAACCCTCGGAAGAGACTCAAAATAATTGGGTTTCTCGGGAAACAAACAGAGGTTTCTTCTCATCACAGCTCATTCACAAGAAGATTGGCTTTAACCAGCATCGTCTCTGTTGCTCTGTTTGGCAACGCATCCGTCGAGATCGCTTCCGCTAACGAGTACTGGCTCGATGGCCCTTTGCCTGTGCCGTCTGTTTACAACAACATTGCGAATGAGAAGACGGGGACCCGATCGTTTCTGAAGACGGGGATTTACATAGCCAACATAGGGACAGAAGGAAGAAAATATAGACTAAAGAGATATGCCTTTGATCTTCTGGCTATGGCGGATTTGATCGGGAAAGATACTTTGAACTATGTAAGGAAGTATCTTCGACTGAAATCGACTTTCATGTACTACGATTTCGACAATGTCATCTCGGCAGCTGCAGATGGTGAGAAGCAGCCTCTAACCGAGCTTGCGAACAGATTGTTCGACAACTTCGAAAAGCTTGAAGATGCAGCAAAACAGAAGAATCTGAGTGAAACTGAATCCTATTATCAGCAGACAACTCCTATACTTCAAGAAGTCATGGATAGAATGGCT

Coding sequence (CDS)

ATGGCTCGTCTCGCAAATTTAAACGGCGTCTCAGACAAATTCTCCGCCATTCCCAAGCTTCCAAAGCTTCAAAACCCTCGGAAGAGACTCAAAATAATTGGGTTTCTCGGGAAACAAACAGAGGTTTCTTCTCATCACAGCTCATTCACAAGAAGATTGGCTTTAACCAGCATCGTCTCTGTTGCTCTGTTTGGCAACGCATCCGTCGAGATCGCTTCCGCTAACGAGTACTGGCTCGATGGCCCTTTGCCTGTGCCGTCTGTTTACAACAACATTGCGAATGAGAAGACGGGGACCCGATCGTTTCTGAAGACGGGGATTTACATAGCCAACATAGGGACAGAAGGAAGAAAATATAGACTAAAGAGATATGCCTTTGATCTTCTGGCTATGGCGGATTTGATCGGGAAAGATACTTTGAACTATGTAAGGAAGTATCTTCGACTGAAATCGACTTTCATGTACTACGATTTCGACAATGTCATCTCGGCAGCTGCAGATGGTGAGAAGCAGCCTCTAACCGAGCTTGCGAACAGATTGTTCGACAACTTCGAAAAGCTTGAAGATGCAGCAAAACAGAAGAATCTGAGTGAAACTGAATCCTATTATCAGCAGACAACTCCTATACTTCAAGAAGTCATGGATAGAATGGCT

Protein sequence

MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVSVALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA

Homology

[Close]

BLAST of MC11g0949.1 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-67
Identity = 134/223 (60.09%), Postives = 166/223 (74.44%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSS--FTRRLALTSI 60
           MA   +LN ++   + +P LPKL   RK  K  GF  ++TE      S   TRR+ L   
Sbjct: 1   MAHFIDLNSLT---NTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  VSVAL---FGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTE 120
           VS+ L    G  +V +A  N +W+DGPLP+P +YNNI NEKTGTR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTE 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA  +KQPLT+
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of MC11g0949.1 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-14
Identity = 54/181 (29.83%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 42  VSSHHSSFTRRLALTSIVSVALFGNASVEIASANEYWLD-GPLPVPSVYNNIANEKTG-T 101
           V +  S  T R ++  +V+  L G + V+   A+   +  GP P PS       + +   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 102 RSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 161
           R F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 162 DFDNVISAAADGEKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 218
           D + +IS+    EK+ L +L  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of MC11g0949.1 vs. ExPASy Swiss-Prot
Match: P12301 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBQ PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-12
Identity = 61/229 (26.64%), Postives = 104/229 (45.41%), Query Frame = 0


Query: 1   MARLANLNGVSD-------KFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRL 60
           MA +A L G S        + S   +L      R  +  +G   +  +VS+   + T R 
Sbjct: 5   MASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSA--EAETSRR 64

Query: 61  ALTSIVSVALFGNASVE--IASANEYWLDGPLPVPSVYNNIANE---KTGTRSFLKTGIY 120
           A+   V+  L   + V+  +A A    +  P P+        N    + GT  + K   Y
Sbjct: 65  AMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFY 124

Query: 121 IANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADG 180
           +  +       R K  A ++L +   I +     ++  LRL+++++ YD   VISA    
Sbjct: 125 LQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKD 184

Query: 181 EKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
           EK+ L EL ++LF + + L+ AAK K+ +E E YY QT   + EV+ ++
Sbjct: 185 EKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

[Close]

BLAST of MC11g0949.1 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 39  QTEVSSHHSSFTRRLALTSIVSVALFGNASVE--IASANEYWLDGPLPVPSVYNNIANEK 98
           Q  VS   SS   R ++  +V+  L G + V+   A A    + GP P+PS      +  
Sbjct: 50  QQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGTDNS 109

Query: 99  TGTRSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTF 158
              R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL++++
Sbjct: 110 DQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASY 169

Query: 159 MYYDFDNVISAAADGEKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEV 218
           + YD + VISA    EKQ L +L  +LF   + L+ AA+ K+  + E YY +T   L  V
Sbjct: 170 LRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNV 229

[Close]

BLAST of MC11g0949.1 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 49  FTRRLALTSIVSVALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIY 108
           FTRR  LTS+++  + G A+   +SA                 +A EK GTRSF+K   +
Sbjct: 41  FTRRRTLTSLITFTVIGGAT---SSA-----------------LAQEKWGTRSFIKEKYF 100

Query: 109 IANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADG 168
           +  +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   + 
Sbjct: 101 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPES 160

Query: 169 EKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
            +    + AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 161 RRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MC11g0949.1 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 427 bits (1098), Expect = 1.09e-150
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. NCBI nr
Match: XP_022940191.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 392 bits (1006), Expect = 1.15e-136
Identity = 200/218 (91.74%), Postives = 206/218 (94.50%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI+G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. NCBI nr
Match: XP_022981605.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 390 bits (1001), Expect = 6.68e-136
Identity = 199/218 (91.28%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVS+KFSAIPKL KL+  RKR KI+G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389 bits (999), Expect = 1.35e-135
Identity = 199/218 (91.28%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. NCBI nr
Match: KAG6607822.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387 bits (993), Expect = 1.11e-134
Identity = 198/218 (90.83%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIA IGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIAKIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 427 bits (1098), Expect = 5.28e-151
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 5.59e-137
Identity = 200/218 (91.74%), Postives = 206/218 (94.50%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI+G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. ExPASy TrEMBL
Match: A0A6J1IZZ5 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480674 PE=3 SV=1)

HSP 1 Score: 390 bits (1001), Expect = 3.23e-136
Identity = 199/218 (91.28%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNGVS+KFSAIPKL KL+  RKR KI+G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of MC11g0949.1 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 374 bits (959), Expect = 7.31e-130
Identity = 195/218 (89.45%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNG   KFSAIP LPKLQN  KRLKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSV NNI NE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL +LANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of MC11g0949.1 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 372 bits (955), Expect = 2.98e-129
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60
           MARLANLNG   KFSAIP LPKLQN  K+LKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL +LANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218
           FDNFEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of MC11g0949.1 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 257.7 bits (657), Expect = 8.5e-69
Identity = 134/223 (60.09%), Postives = 166/223 (74.44%), Query Frame = 0


Query: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSS--FTRRLALTSI 60
           MA   +LN ++   + +P LPKL   RK  K  GF  ++TE      S   TRR+ L   
Sbjct: 1   MAHFIDLNSLT---NTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  VSVAL---FGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTE 120
           VS+ L    G  +V +A  N +W+DGPLP+P +YNNI NEKTGTR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTE 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA  +KQPLT+
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of MC11g0949.1 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-16
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 0


Query: 42  VSSHHSSFTRRLALTSIVSVALFGNASVEIASANEYWLD-GPLPVPSVYNNIANEKTGTR 101
           V +  S  T R ++  +V+  L G + V+   A+   +  GP P PS      +     R
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQAR 102

Query: 102 SF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYD 161
            F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ YD
Sbjct: 103 DFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYD 162

Query: 162 FDNVISAAADGEKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
            + +IS+    EK+ L +L  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 163 LNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of MC11g0949.1 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-15
Identity = 54/181 (29.83%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 42  VSSHHSSFTRRLALTSIVSVALFGNASVEIASANEYWLD-GPLPVPSVYNNIANEKTG-T 101
           V +  S  T R ++  +V+  L G + V+   A+   +  GP P PS       + +   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 102 RSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 161
           R F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 162 DFDNVISAAADGEKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 218
           D + +IS+    EK+ L +L  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of MC11g0949.1 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 39  QTEVSSHHSSFTRRLALTSIVSVALFGNASVE--IASANEYWLDGPLPVPSVYNNIANEK 98
           Q  VS   SS   R ++  +V+  L G + V+   A A    + GP P+PS      +  
Sbjct: 50  QQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGTDNS 109

Query: 99  TGTRSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTF 158
              R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL++++
Sbjct: 110 DQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASY 169

Query: 159 MYYDFDNVISAAADGEKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEV 218
           + YD + VISA    EKQ L +L  +LF   + L+ AA+ K+  + E YY +T   L  V
Sbjct: 170 LRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNV 229

[Close]

BLAST of MC11g0949.1 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-12
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 49  FTRRLALTSIVSVALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIY 108
           FTRR  LTS+++  + G A+   +SA                 +A EK GTRSF+K   +
Sbjct: 41  FTRRRTLTSLITFTVIGGAT---SSA-----------------LAQEKWGTRSFIKEKYF 100

Query: 109 IANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADG 168
           +  +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   + 
Sbjct: 101 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPES 160

Query: 169 EKQPLTELANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
            +    + AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 161 RRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

The following BLAST results are available for this feature:

BLAST of MC11g0949.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	1.2e-67	60.09	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	3.4e-14	29.83	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P12301	7.1e-12	26.64	Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]
Q41932	1.6e-11	30.43	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q9XI73	2.1e-11	26.47	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]

BLAST of MC11g0949.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139520.1	1.09e-150	100.00	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara...	[more]
XP_022940191.1	1.15e-136	91.74	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita mosch...	[more]
XP_022981605.1	6.68e-136	91.28	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxim...	[more]
KAG7015220.1	1.35e-135	91.28	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]
KAG6607822.1	1.11e-134	90.83	Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurb...	[more]

BLAST of MC11g0949.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCI9	5.28e-151	100.00	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A6J1FHS2	5.59e-137	91.74	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1IZZ5	3.23e-136	91.28	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L7N1	7.31e-130	89.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A5A7TX10	2.98e-129	88.99	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of MC11g0949.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	8.5e-69	60.09	PsbQ-like 1	[more]
AT4G21280.1	6.4e-16	30.00	photosystem II subunit QA	[more]
AT4G21280.2	2.4e-15	29.83	photosystem II subunit QA	[more]
AT4G05180.1	1.1e-12	30.43	photosystem II subunit Q-2	[more]
AT1G14150.1	1.5e-12	26.47	PsbQ-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 80..218 e-value: 3.3E-45 score: 155.8
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 108..218
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 24..218 e-value: 2.7E-55 score: 187.2
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..218
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..218

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0949	MC11g0949	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0949.1-cds	MC11g0949.1-cds-MC11:8078365..8078460	CDS
MC11g0949.1-cds	MC11g0949.1-cds-MC11:8078543..8078829	CDS
MC11g0949.1-cds	MC11g0949.1-cds-MC11:8078952..8079222	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0949.1	MC11g0949.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity