MC11g0938.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0938.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	organelle RRM domain-containing protein 2, mitochondrial
Location	MC11: 7973001 .. 7973831 (+)
Sequence length	429
RNA-Seq Expression	MC11g0938.1
Synteny	MC11g0938.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGACGATCTCGCACTCTATTCGGGATTGGGAGAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGTCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAACTCAATTCTTTCTTAATCTTGATACCTTTCGATTATTTGTTTTACTGTATCTCGTGTGTGCGTTTTATTATTCGCTCATTTTCTGGTCGTGAATCTGTTAATATTGTGTTTCAAGGTTCTGTTTTGATAGTATGAGGTGGCTATCCGTGCCCCGAGAAGGGCGTTGGCCTCCTCTGCTTGCAAGGGAAATTTTGCTGTGAATGTGTTGAACTGCCTGATTGTTTATAAGTGCAATTTATTGTTGTTGCCAACAAAGAACTCTGTTTTTCATGTGATGTCGATATTTTACCTTCTTTCAGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGGTCTGTACAGTTGTTCATTCTCTCTGCTCCGCGTTTGTTTGATTTGTGTGTTAGGCCTTATATGAGTTTATTCTTTAACTTTTCCCCTTCTGTTTTCAGCTAGAGTTGTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG

mRNA sequence

ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGACGATCTCGCACTCTATTCGGGATTGGGAGAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGTCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGCTAGAGTTGTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGACGATCTCGCACTCTATTCGGGATTGGGAGAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGTCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGCTAGAGTTGTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG

Protein sequence

MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

Homology

[Close]

BLAST of MC11g0938.1 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 50  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHA 109
           RLF S AS  SF+ P        R + EPSTNLFVSGLSKRTT+E L   FAQFGEV  A
Sbjct: 26  RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA 85

Query: 110 RVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +VVTDRV+GYSKGFGFV+YA LED+AKGI GMDGK
Sbjct: 86  KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of MC11g0938.1 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 49  VRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHA 108
           V + S  ST S   PP   S        P T L+VSGLS RTT + L +TF QFG ++H 
Sbjct: 54  VLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHM 113

Query: 109 RVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
            +V D+V    KGF F++Y   E+A K I+GM GK
Sbjct: 114 NMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of MC11g0938.1 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 138 EGMDGK 144
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of MC11g0938.1 vs. ExPASy Swiss-Prot
Match: Q9LU44 (Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 63  PPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGF 122
           P  PPS +  E     TNL++  L      + L   F+ FGE+V A+V+ DRVTG SKG+
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGY 528

Query: 123 GFVKYANLEDAAKGIEGMDG 143
           GFVKYA+++ A   ++ M+G
Sbjct: 529 GFVKYADVQMANTAVQAMNG 543

[Close]

BLAST of MC11g0938.1 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 82  FVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMD 141
           FV GL+  T  E L + FA FG+V+ ++V+TDR TG S+GFGFV +++ +     IE M+
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 142 GK 144
           GK
Sbjct: 71  GK 72

[Close]

BLAST of MC11g0938.1 vs. NCBI nr
Match: XP_022139714.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 276 bits (707), Expect = 4.13e-93
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYANLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYANLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 234 bits (597), Expect = 2.39e-76
Identity = 123/143 (86.01%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAAAAPRSLRRL++ TST T   IS +I DWEK EPS N+F+S RLFS ASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLHE FA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 229 bits (584), Expect = 2.44e-74
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++RTST T   IS +I DWEKPEPS  +F+S RLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE FA+FGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 225 bits (573), Expect = 1.08e-72
Identity = 119/143 (83.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAAAAPRSLRRL++ TS  T      +I D EKP P+ N+FVS RLFS ASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHETFA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 224 bits (571), Expect = 2.25e-72
Identity = 117/143 (81.82%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++ TST T   IS +I DWEKP PS NSF+  RLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F++FGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. ExPASy TrEMBL
Match: A0A6J1CDT1 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010565 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 2.00e-93
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYANLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYANLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 1.18e-74
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++RTST T   IS +I DWEKPEPS  +F+S RLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE FA+FGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 225 bits (573), Expect = 5.23e-73
Identity = 119/143 (83.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAAAAPRSLRRL++ TS  T      +I D EKP P+ N+FVS RLFS ASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHETFA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 1.09e-72
Identity = 117/143 (81.82%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++ TST T   IS +I DWEKP PS NSF+  RLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F++FGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 3.23e-72
Identity = 119/143 (83.22%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60
           MALRSAAA APRSLRRL++ TS+ T   IS +I DWEK E S N+FVS RLFS  S SSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKL+E FA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 143
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MC11g0938.1 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 50  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHA 109
           RLF S AS  SF+ P        R + EPSTNLFVSGLSKRTT+E L   FAQFGEV  A
Sbjct: 26  RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA 85

Query: 110 RVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +VVTDRV+GYSKGFGFV+YA LED+AKGI GMDGK
Sbjct: 86  KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of MC11g0938.1 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-15
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           S  LFVSGLS+ TT EKL + FA FG++V ARV+TDR +G SKGFGFV YA +EDA K  
Sbjct: 33  SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92

Query: 138 EGMDGK 144
             M+ K
Sbjct: 93  AEMNAK 98

[Close]

BLAST of MC11g0938.1 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-14
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 49  VRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHA 108
           V + S  ST S   PP   S        P T L+VSGLS RTT + L +TF QFG ++H 
Sbjct: 54  VLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHM 113

Query: 109 RVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
            +V D+V    KGF F++Y   E+A K I+GM GK
Sbjct: 114 NMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of MC11g0938.1 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 138 EGMDGK 144
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of MC11g0938.1 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 138 EGMDGK 144
             MDGK
Sbjct: 94  SEMDGK 99

The following BLAST results are available for this feature:

BLAST of MC11g0938.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.5e-26	68.42	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	1.2e-12	44.21	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9SVM8	9.7e-10	50.00	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LU44	9.7e-10	42.50	Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1	[more]
Q99070	1.7e-09	46.77	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of MC11g0938.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139714.1	4.13e-93	100.00	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_038896843.1	2.39e-76	86.01	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_004151968.1	2.44e-74	83.92	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5...	[more]
XP_022976594.1	1.08e-72	83.22	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]
XP_008454580.1	2.25e-72	81.82	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]

BLAST of MC11g0938.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDT1	2.00e-93	100.00	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A0A0LD10	1.18e-74	83.92	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]
A0A6J1INZ4	5.23e-73	83.22	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A1S3C066	1.09e-72	81.82	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1FQV3	3.23e-72	83.22	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]

BLAST of MC11g0938.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	1.1e-27	68.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	2.1e-15	60.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	8.7e-14	44.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.1	6.9e-11	50.00	glycine-rich RNA-binding protein 2	[more]
AT4G13850.2	6.9e-11	50.00	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..143 e-value: 3.6E-13 score: 59.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..143 e-value: 1.4E-18 score: 66.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..143 score: 17.165293
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..143 e-value: 2.6E-24 score: 87.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..79
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..143 coord: 1..48
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..143 coord: 1..48
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 61..143

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0938	MC11g0938	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0938.1-cds	MC11g0938.1-cds-MC11:7973001..7973253	CDS
MC11g0938.1-cds	MC11g0938.1-cds-MC11:7973557..7973625	CDS
MC11g0938.1-cds	MC11g0938.1-cds-MC11:7973725..7973831	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0938.1	MC11g0938.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding