MC11g0887.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0887.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 7514198 .. 7514782 (+)
Sequence length	585
RNA-Seq Expression	MC11g0887.1
Synteny	MC11g0887.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTCAGAAAATGGTTTCTTGGTTGGTCTCTTTGTGTTTCTCTGCCTGAGCCTCACCTCTGCCCATCGAGTTCTTAAGGGCAGCGATGCTGAAAATGGGATGACAGCTAATGATTTACCTTCTGGGCATGACGTACAACTGCTCGGTACCAGCCATGCTGGTCTGAAAGGTGGCATGCCGAAGTTCAGTTCTGTTGGTCCAACCAGTGGTGATTGCTGCAACTATGGCAGCAATTGTGGGCAGAATGGATACGGGTGTCCTCCAAGCTATGGATGTGGTGGGGGTAACTGTGGTGGTGGCAACTCCGGTTGTCAATCCTGCGGTGGCGGTAACAGTGGTGGTGGCTGCTACTCTTGTCCACCGTGCCAATGGCAGGGATGCCAAGGATGCCAGGGATCGCCTCCGCCCTGTGGCTGCGAATTCCGCATTGATAACTCTAAGGTGCAAGATGAGTCTACTGTAACGTCTGAACCTGATCCACCTTCTATTGTAGATGTTCCACAAGTCCAGCCAGAAAATCATAACAAAAAATCCAGTGGGGGAGCAAACCAGGACAGGAAATCCAATGGGGGTATGGTT

mRNA sequence

ATGGCAGTTTCAGAAAATGGTTTCTTGGTTGGTCTCTTTGTGTTTCTCTGCCTGAGCCTCACCTCTGCCCATCGAGTTCTTAAGGGCAGCGATGCTGAAAATGGGATGACAGCTAATGATTTACCTTCTGGGCATGACGTACAACTGCTCGGTACCAGCCATGCTGGTCTGAAAGGTGGCATGCCGAAGTTCAGTTCTGTTGGTCCAACCAGTGGTGATTGCTGCAACTATGGCAGCAATTGTGGGCAGAATGGATACGGGTGTCCTCCAAGCTATGGATGTGGTGGGGGTAACTGTGGTGGTGGCAACTCCGGTTGTCAATCCTGCGGTGGCGGTAACAGTGGTGGTGGCTGCTACTCTTGTCCACCGTGCCAATGGCAGGGATGCCAAGGATGCCAGGGATCGCCTCCGCCCTGTGGCTGCGAATTCCGCATTGATAACTCTAAGGTGCAAGATGAGTCTACTGTAACGTCTGAACCTGATCCACCTTCTATTGTAGATGTTCCACAAGTCCAGCCAGAAAATCATAACAAAAAATCCAGTGGGGGAGCAAACCAGGACAGGAAATCCAATGGGGGTATGGTT

Coding sequence (CDS)

ATGGCAGTTTCAGAAAATGGTTTCTTGGTTGGTCTCTTTGTGTTTCTCTGCCTGAGCCTCACCTCTGCCCATCGAGTTCTTAAGGGCAGCGATGCTGAAAATGGGATGACAGCTAATGATTTACCTTCTGGGCATGACGTACAACTGCTCGGTACCAGCCATGCTGGTCTGAAAGGTGGCATGCCGAAGTTCAGTTCTGTTGGTCCAACCAGTGGTGATTGCTGCAACTATGGCAGCAATTGTGGGCAGAATGGATACGGGTGTCCTCCAAGCTATGGATGTGGTGGGGGTAACTGTGGTGGTGGCAACTCCGGTTGTCAATCCTGCGGTGGCGGTAACAGTGGTGGTGGCTGCTACTCTTGTCCACCGTGCCAATGGCAGGGATGCCAAGGATGCCAGGGATCGCCTCCGCCCTGTGGCTGCGAATTCCGCATTGATAACTCTAAGGTGCAAGATGAGTCTACTGTAACGTCTGAACCTGATCCACCTTCTATTGTAGATGTTCCACAAGTCCAGCCAGAAAATCATAACAAAAAATCCAGTGGGGGAGCAAACCAGGACAGGAAATCCAATGGGGGTATGGTT

Protein sequence

MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTANDLPSGHDVQLLGTSHAGLKGGMPKFSSVGPTSGDCCNYGSNCGQNGYGCPPSYGCGGGNCGGGNSGCQSCGGGNSGGGCYSCPPCQWQGCQGCQGSPPPCGCEFRIDNSKVQDESTVTSEPDPPSIVDVPQVQPENHNKKSSGGANQDRKSNGGMV

Homology

[Close]

BLAST of MC11g0887.1 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_012773 [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 2.60e-47
Identity = 105/216 (48.61%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 1   MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTANDLPSGHDVQLLGTSHAGLKG- 60
           MAV+    LVGL  FLCLSL SA+R+LK +DAEN +  +D+PSG +     ++H  LK  
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  ---GMPKFSSVGPTSGDCCNYGSNCGQNGYGCPPSYGCGG-GNC----GGGNSGCQSCGG 120
               M K SS+ P +GDCC+YG+NCG   Y  PP+ GCGG G C    GGG  GC  C G
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGI--YP-PPTCGCGGCGGCSGCSGGGGGGCSGCSG 120

Query: 121 GNSGGG------CYSCPPCQWQGC------QGCQGSPPPCGCEFRIDNSKVQDESTVTSE 180
           G  GGG      C +C  CQWQGC      QGCQG    CGC+  +D+SKV+ +S  T E
Sbjct: 121 GGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQS-CGCQASMDDSKVEQDSVQTGE 180

Query: 181 PDPPSIVDVPQVQPENHNKKSSGGANQDRKSNGGMV 195
           P  P +  VP  +P +++ KSSGG+NQD KSNGG+V
Sbjct: 181 P-APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]

BLAST of MC11g0887.1 vs. NCBI nr
Match: KAG6591970.1 (hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151 bits (381), Expect = 3.51e-42
Identity = 108/230 (46.96%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 1   MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTANDLPSGHDVQLLGTSHAGLK-- 60
           MAV++N FLVGL  FLCLSL+SA+RVLK +DAE  +  N++ S  D QL   ++A LK  
Sbjct: 1   MAVTKNSFLVGLLAFLCLSLSSANRVLKNNDAEKELLNNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  --GGMPKFSSVGPTSGDCCNYGSNCGQNG---YGCPPSYGCGGGNC------GGGNSGCQ 120
             G +PK SSVG   GDC   G NCG +G   Y  PP+YG GGG+       GGG+SGCQ
Sbjct: 61  PEGNVPKLSSVGSGYGDC---GGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQ 120

Query: 121 SCGGGNSGGGCYSCPPCQWQGC--------------------QGCQGSPPPCGCEF-RID 180
            C         Y+  PC WQGC                    QGCQ   PPC  E   ++
Sbjct: 121 PC---------YTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVN 180

Query: 181 NSKVQDEST-VTSEPDPPSIVDVPQVQPENHNKKSSGGANQDRKSNGGMV 195
           +SK+QDES  +  EP+PP       V PENH+ KSSGGANQD KSNGG+V
Sbjct: 181 DSKIQDESIPMGEEPEPP-------VLPENHHIKSSGGANQDMKSNGGLV 211

[Close]

BLAST of MC11g0887.1 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147 bits (372), Expect = 9.72e-41
Identity = 107/237 (45.15%), Postives = 133/237 (56.12%), Query Frame = 0


Query: 1   MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTANDLPSGHDVQLLGTSHAGLK-- 60
           MAV+++ FLVGL  FLCLSL+SA+RVLK +DAE  + +N++ S  D QL   ++A LK  
Sbjct: 1   MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  --GGMPKFSSVGPTSGDCCNYGSNCGQNG---YGCPPSYGCGGGNC------GGGNSGCQ 120
             G +PK SSVG   GDC   G NCG +G   Y  PP+YG GGG+       GGG+SGCQ
Sbjct: 61  PEGNVPKLSSVGSGYGDC---GGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQ 120

Query: 121 SCGGGNSGGGCYSCPPCQWQGC---------------------------QGCQGSPPPCG 180
            C         Y+  PC WQGC                           QGCQ   PPC 
Sbjct: 121 PC---------YTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQGGCQGCQAPHPPCT 180

Query: 181 CEF-RIDNSKVQDEST-VTSEPDPPSIVDVPQVQPENHNKKSSGGANQDRKSNGGMV 195
            E   +++SK+QDES  +  EP+PP       V PENH+ KSSGGANQD KSNGG+V
Sbjct: 181 FEVGTVNDSKIQDESIPMGEEPEPP-------VLPENHHIKSSGGANQDMKSNGGLV 218

[Close]

BLAST of MC11g0887.1 vs. NCBI nr
Match: KAG6607873.1 (hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (302), Expect = 1.09e-30
Identity = 89/200 (44.50%), Postives = 112/200 (56.00%), Query Frame = 0


Query: 1   MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTANDLPSGHDVQLLGTSHAGL--- 60
           MAV+++  LV L + LCLS +SA+RVLK +D+EN    N +  G + +L    HA L   
Sbjct: 7   MAVTKDSILVSLLMLLCLSHSSANRVLKDNDSENESINNSVSFGQEYELHNFIHAELNNI 66

Query: 61  --KGGMPKFSSVGPTSGDCCNYGSNCGQNGYGCPPSYGCGGGNCGGGNSGCQSCGGGNSG 120
             +G +PKF S      DCCN+G++ G  GY CPP++ CG       NSGC+        
Sbjct: 67  VPEGSIPKFRSYR----DCCNHGNHGG--GYVCPPNHACGR------NSGCRPY------ 126

Query: 121 GGCYSCPPCQWQGCQGCQGSPPPCGCEFRIDNSKVQDESTVTSEPDPPSIVDVPQVQPEN 180
              YSC PCQW         PPPCGC      S VQ ES  TSE D     +VP V+P N
Sbjct: 127 ---YSCSPCQWWRYPVL---PPPCGCAVGKSYSMVQ-ESIQTSEADLDG--NVPAVEPAN 179

Query: 181 HNKKSSGGANQDRKSNGGMV 195
           HN K SGGANQ+ KSNGG+V
Sbjct: 187 HNIKFSGGANQNMKSNGGLV 179

[Close]

BLAST of MC11g0887.1 vs. ExPASy TrEMBL
Match: A0A0A0L3F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 1.26e-47
Identity = 105/216 (48.61%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 1   MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTANDLPSGHDVQLLGTSHAGLKG- 60
           MAV+    LVGL  FLCLSL SA+R+LK +DAEN +  +D+PSG +     ++H  LK  
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  ---GMPKFSSVGPTSGDCCNYGSNCGQNGYGCPPSYGCGG-GNC----GGGNSGCQSCGG 120
               M K SS+ P +GDCC+YG+NCG   Y  PP+ GCGG G C    GGG  GC  C G
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGI--YP-PPTCGCGGCGGCSGCSGGGGGGCSGCSG 120

Query: 121 GNSGGG------CYSCPPCQWQGC------QGCQGSPPPCGCEFRIDNSKVQDESTVTSE 180
           G  GGG      C +C  CQWQGC      QGCQG    CGC+  +D+SKV+ +S  T E
Sbjct: 121 GGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQS-CGCQASMDDSKVEQDSVQTGE 180

Query: 181 PDPPSIVDVPQVQPENHNKKSSGGANQDRKSNGGMV 195
           P  P +  VP  +P +++ KSSGG+NQD KSNGG+V
Sbjct: 181 P-APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]

BLAST of MC11g0887.1 vs. ExPASy TrEMBL
Match: A0A5A7V9R7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003880 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.76e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  MAVSENGFLVGLFVFLCLSLTSAHRVLKGSDAENGMTA 38
          MAV++   LVGL  FLCLSL+SA+R+LK +DAEN + A
Sbjct: 1  MAVTKTSLLVGLLAFLCLSLSSANRILKNNDAENQLIA 38

The following BLAST results are available for this feature:

BLAST of MC11g0887.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0887.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55137.1	2.60e-47	48.61	hypothetical protein Csa_012773 [Cucumis sativus]	[more]
KAG6591970.1	3.51e-42	46.96	hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023535133.1	9.72e-41	45.15	mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607873.1	1.09e-30	44.50	hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC11g0887.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F6	1.26e-47	48.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1	[more]
A0A5A7V9R7	5.76e-04	60.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC11g0887.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..195

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0887	MC11g0887	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0887.1-cds	MC11g0887.1-cds-MC11:7514198..7514782	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0887.1	MC11g0887.1-protein	polypeptide