MC11g0815.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0815.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transmembrane protein
Location	MC11: 6919305 .. 6919597 (-)
Sequence length	204
RNA-Seq Expression	MC11g0815.1
Synteny	MC11g0815.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAGAAGAGGTTTCCGGTCCGGCAGGTCCTAAGGTTCTCCGTTTTCTCTATTTCGCCGGCGCCGGATGTAAGTTTCTTCGATTCATCACTTTTCTTCTCTGTCTTCAAATTCTGTTTTCTCCTATTTATTTATCGTTCCATTCAATGTGTTATCAGTTGTCTTCGCCATCGCGGTAAACAAGTGGCGGGAGATGGAGCGCCGTTCTCTGTTGCAACAGCATCAGAAGCAGATGTTGAATCATCAATTCTCAGAAACTCCTAATGATGCGGTACAGAAGGTCGTCGAG

mRNA sequence

ATGGCGGGAGAAGAGGTTTCCGGTCCGGCAGGTCCTAAGGTTCTCCGTTTTCTCTATTTCGCCGGCGCCGGATTTGTCTTCGCCATCGCGGTAAACAAGTGGCGGGAGATGGAGCGCCGTTCTCTGTTGCAACAGCATCAGAAGCAGATGTTGAATCATCAATTCTCAGAAACTCCTAATGATGCGGTACAGAAGGTCGTCGAG

Coding sequence (CDS)

ATGGCGGGAGAAGAGGTTTCCGGTCCGGCAGGTCCTAAGGTTCTCCGTTTTCTCTATTTCGCCGGCGCCGGATTTGTCTTCGCCATCGCGGTAAACAAGTGGCGGGAGATGGAGCGCCGTTCTCTGTTGCAACAGCATCAGAAGCAGATGTTGAATCATCAATTCTCAGAAACTCCTAATGATGCGGTACAGAAGGTCGTCGAG

Protein sequence

MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPNDAVQKVVE

Homology

[Close]

BLAST of MC11g0815.1 vs. NCBI nr
Match: XP_022134299.1 (uncharacterized protein LOC111006563 [Momordica charantia] >XP_022134378.1 uncharacterized protein LOC111006563 [Momordica charantia])

HSP 1 Score: 137 bits (345), Expect = 1.09e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVE 68
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of MC11g0815.1 vs. NCBI nr
Match: XP_023522224.1 (uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (288), Expect = 5.47e-32
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPKVLR LYFAGAGFVF IA+NKWRE+ER+SLLQQ QKQ L+HQF+E+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DAVQKVV 67
          DAVQKVV
Sbjct: 61 DAVQKVV 67

[Close]

BLAST of MC11g0815.1 vs. NCBI nr
Match: XP_022982102.1 (uncharacterized protein LOC111481043 [Cucurbita maxima])

HSP 1 Score: 115 bits (287), Expect = 7.77e-32
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPKVLR LYFAGAGFVF IA+NKWRE+E +SLLQQ QKQ L+HQF+ETPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVV 67
          DAVQKVV
Sbjct: 61 DAVQKVV 67

[Close]

BLAST of MC11g0815.1 vs. NCBI nr
Match: KAG7037451.1 (hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (284), Expect = 2.23e-31
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPKVLR LYF GAGFVF IA+NKWRE+ER+SLLQQ QKQ L+HQF+E+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVV 67
          DAVQKVV
Sbjct: 61 DAVQKVV 67

[Close]

BLAST of MC11g0815.1 vs. NCBI nr
Match: XP_011654034.1 (uncharacterized protein LOC105435291 [Cucumis sativus] >XP_031739554.1 uncharacterized protein LOC105435291 [Cucumis sativus] >KGN55049.1 hypothetical protein Csa_012569 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 4.50e-31
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPK+LR LYFAGAGF+ + A+NKWRE+ER SLLQQ QKQ LNHQ SE+PN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 68
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of MC11g0815.1 vs. ExPASy TrEMBL
Match: A0A6J1C1U1 (uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006563 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 5.27e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVE 68
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of MC11g0815.1 vs. ExPASy TrEMBL
Match: A0A6J1IVQ6 (uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.76e-32
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPKVLR LYFAGAGFVF IA+NKWRE+E +SLLQQ QKQ L+HQF+ETPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVV 67
          DAVQKVV
Sbjct: 61 DAVQKVV 67

[Close]

BLAST of MC11g0815.1 vs. ExPASy TrEMBL
Match: A0A0A0L208 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 2.18e-31
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPK+LR LYFAGAGF+ + A+NKWRE+ER SLLQQ QKQ LNHQ SE+PN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 68
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of MC11g0815.1 vs. ExPASy TrEMBL
Match: A0A6J1FMP5 (uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC111446806 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 6.25e-31
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M GEEV+GPAGPKVLR LYF GAGFVF IA+NKWRE+E +SLLQQ QKQ L+HQF+E+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVV 67
          DAVQKVV
Sbjct: 61 DAVQKVV 67

[Close]

BLAST of MC11g0815.1 vs. ExPASy TrEMBL
Match: A0A090ITT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 111 bits (278), Expect = 8.89e-31
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60
          M G+EV+GPAGPK+LR LYFAGAGF+ + A+NKWRE+ER SLLQQ QKQ LNHQ SE+PN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 68
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of MC11g0815.1 vs. TAIR 10
Match: AT1G16916.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 8  GPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPNDAVQKVV 67
          GP  PK+LR +YF GAGF+   A+NKWREMER SLL+Q Q++         P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 E 69
          +
Sbjct: 65 K 65

The following BLAST results are available for this feature:

BLAST of MC11g0815.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0815.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134299.1	1.09e-40	100.00	uncharacterized protein LOC111006563 [Momordica charantia] >XP_022134378.1 uncha...	[more]
XP_023522224.1	5.47e-32	82.09	uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022982102.1	7.77e-32	82.09	uncharacterized protein LOC111481043 [Cucurbita maxima]	[more]
KAG7037451.1	2.23e-31	80.60	hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_011654034.1	4.50e-31	77.94	uncharacterized protein LOC105435291 [Cucumis sativus] >XP_031739554.1 uncharact...	[more]

BLAST of MC11g0815.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1U1	5.27e-41	100.00	uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1IVQ6	3.76e-32	82.09	uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043...	[more]
A0A0A0L208	2.18e-31	77.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1	[more]
A0A6J1FMP5	6.25e-31	79.10	uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC1114468...	[more]
A0A090ITT6	8.89e-31	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of MC11g0815.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16916.1	1.1e-11	50.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0815	MC11g0815	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0815.1-cds	MC11g0815.1-cds-MC11:6919305..6919435	CDS
MC11g0815.1-cds	MC11g0815.1-cds-MC11:6919525..6919597	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0815.1	MC11g0815.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane