MC11g0776.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0776.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	conserved peptide upstream open reading frame 18
Location	MC11: 6271639 .. 6271836 (+)
Sequence length	198
RNA-Seq Expression	MC11g0776.1
Synteny	MC11g0776.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGGTTGGGAAAGCTGGGTTTAAATTTGAGTTCTAATTCTAATCACTTCATTACGTGTCTCTTACTTTTTCTCCTCCATTATTCGCCTCAATTGACTCCTTCTTTGTTTAATTTGGACAATAAATCCATAGATCCCTTATTACTGATTTCGAATCCAAATTCCAATCGTTTTCTTAATAATAACCCGACTACT

mRNA sequence

ATGAACTGGTTGGGAAAGCTGGGTTTAAATTTGAGTTCTAATTCTAATCACTTCATTACGTGTCTCTTACTTTTTCTCCTCCATTATTCGCCTCAATTGACTCCTTCTTTGTTTAATTTGGACAATAAATCCATAGATCCCTTATTACTGATTTCGAATCCAAATTCCAATCGTTTTCTTAATAATAACCCGACTACT

Coding sequence (CDS)

ATGAACTGGTTGGGAAAGCTGGGTTTAAATTTGAGTTCTAATTCTAATCACTTCATTACGTGTCTCTTACTTTTTCTCCTCCATTATTCGCCTCAATTGACTCCTTCTTTGTTTAATTTGGACAATAAATCCATAGATCCCTTATTACTGATTTCGAATCCAAATTCCAATCGTTTTCTTAATAATAACCCGACTACT

Protein sequence

MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKSIDPLLLISNPNSNRFLNNNPTT

Homology

[Close]

BLAST of MC11g0776.1 vs. NCBI nr
Match: XP_008464647.1 (PREDICTED: uncharacterized protein LOC103502484 [Cucumis melo])

HSP 1 Score: 105 bits (262), Expect = 4.54e-28
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKSIDPLLLIS-NPNSNRF 60
          MN LGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN D KSID LLL+  N +SNRF
Sbjct: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60

Query: 61 LNNNPTT 66
          LNN PTT
Sbjct: 61 LNNKPTT 67

[Close]

BLAST of MC11g0776.1 vs. NCBI nr
Match: OAY75003.1 (putative polyamine oxidase 2 [Ananas comosus])

HSP 1 Score: 62.4 bits (150), Expect = 2.72e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN--------LDNKSIDPLLLI 51
          MNW   LGLN  SNSNHFITCLL+F+LHYSPQL PS+ N        ++ KSI P  ++
Sbjct: 1  MNWFVNLGLN--SNSNHFITCLLIFVLHYSPQLPPSILNSRRSYFSNVERKSISPSAIV 57

[Close]

BLAST of MC11g0776.1 vs. NCBI nr
Match: ACG47877.1 (hypothetical protein [Zea mays])

HSP 1 Score: 48.9 bits (115), Expect = 9.11e-06
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPS 36
          MN    LGLN  SNSNH++ CLL+FLLH+SPQL PS
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPS 34

[Close]

BLAST of MC11g0776.1 vs. NCBI nr
Match: AQK46272.1 (hypothetical protein ZEAMMB73_Zm00001d026334 [Zea mays])

HSP 1 Score: 48.9 bits (115), Expect = 1.17e-05
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPS 36
          MN    LGLN  SNSNH++ CLL+FLLH+SPQL PS
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPS 34

[Close]

BLAST of MC11g0776.1 vs. NCBI nr
Match: XP_017430880.1 (PREDICTED: uncharacterized protein LOC108338487 [Vigna angularis])

HSP 1 Score: 48.1 bits (113), Expect = 2.05e-05
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKS 44
          M+W GKL L  + NS HFIT LL+F LH+SPQ + SLFN + K+
Sbjct: 1  MSWFGKLRLFANFNSFHFITSLLIFTLHFSPQSSFSLFNSNAKT 44

[Close]

BLAST of MC11g0776.1 vs. ExPASy TrEMBL
Match: A0A1S3CLZ5 (uncharacterized protein LOC103502484 OS=Cucumis melo OX=3656 GN=LOC103502484 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 2.20e-28
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKSIDPLLLIS-NPNSNRF 60
          MN LGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN D KSID LLL+  N +SNRF
Sbjct: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60

Query: 61 LNNNPTT 66
          LNN PTT
Sbjct: 61 LNNKPTT 67

[Close]

BLAST of MC11g0776.1 vs. ExPASy TrEMBL
Match: A0A2P2MJZ7 (Uncharacterized protein LOC103965579 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.33e-15
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MNWLGKLGLNL-SSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKSIDPLLLISNPNSNRF 60
          M+W GK G    SSNSNHF+TCLL+F LH+SPQL PSLF   NKSI+PLL +   +S+R 
Sbjct: 1  MSWFGKPGCYFFSSNSNHFLTCLLIFTLHFSPQLPPSLFKFQNKSIEPLLALLVASSDRN 60

Query: 61 LNNN 63
           N+N
Sbjct: 61 FNSN 64

[Close]

BLAST of MC11g0776.1 vs. ExPASy TrEMBL
Match: A0A199VDA8 (Putative polyamine oxidase 2 OS=Ananas comosus OX=4615 GN=ACMD2_00651 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.32e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN--------LDNKSIDPLLLI 51
          MNW   LGLN  SNSNHFITCLL+F+LHYSPQL PS+ N        ++ KSI P  ++
Sbjct: 1  MNWFVNLGLN--SNSNHFITCLLIFVLHYSPQLPPSILNSRRSYFSNVERKSISPSAIV 57

[Close]

BLAST of MC11g0776.1 vs. ExPASy TrEMBL
Match: B6UEU4 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.41e-06
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPS 36
          MN    LGLN  SNSNH++ CLL+FLLH+SPQL PS
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPS 34

[Close]

BLAST of MC11g0776.1 vs. ExPASy TrEMBL
Match: A0A1D6JES6 (Uncharacterized protein OS=Zea mays OX=4577 GN=103642073 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.67e-06
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPS 36
          MN    LGLN  SNSNH++ CLL+FLLH+SPQL PS
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPS 34

[Close]

BLAST of MC11g0776.1 vs. TAIR 10
Match: AT3G59052.1 (conserved peptide upstream open reading frame 18 )

HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKSIDPLLLISNPNSNRFL 60
          MN+  KLG N S  S    T LL+ +L +SPQL  SLF  + KS+DPL L ++  +   L
Sbjct: 1  MNFFRKLGFNPSIASYFTNTSLLISILSFSPQLPISLFLFEQKSLDPLSLCNSSTNFNNL 60

Query: 61 NNN 64
           +N
Sbjct: 61 ESN 63

[Close]

BLAST of MC11g0776.1 vs. TAIR 10
Match: AT2G43018.1 (conserved peptide upstream open reading frame 17 )

HSP 1 Score: 40.8 bits (94), Expect = 4.9e-04
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 1  MNWLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNLDNKSIDPLLLISNPNSNRFL 60
          MN  G L +  SS S+HF TCLL+F+LH+SPQL     N +N + +     +N  SNR +
Sbjct: 1  MNLFGSL-IFSSSISSHFTTCLLIFILHFSPQL-----NSNNNNNNSNRNSNNLESNRLI 55

Query: 61 N 62
          N
Sbjct: 61 N 55

The following BLAST results are available for this feature:

BLAST of MC11g0776.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0776.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464647.1	4.54e-28	85.07	PREDICTED: uncharacterized protein LOC103502484 [Cucumis melo]	[more]
OAY75003.1	2.72e-09	55.93	putative polyamine oxidase 2 [Ananas comosus]	[more]
ACG47877.1	9.11e-06	66.67	hypothetical protein [Zea mays]	[more]
AQK46272.1	1.17e-05	66.67	hypothetical protein ZEAMMB73_Zm00001d026334 [Zea mays]	[more]
XP_017430880.1	2.05e-05	56.82	PREDICTED: uncharacterized protein LOC108338487 [Vigna angularis]	[more]

BLAST of MC11g0776.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CLZ5	2.20e-28	85.07	uncharacterized protein LOC103502484 OS=Cucumis melo OX=3656 GN=LOC103502484 PE=...	[more]
A0A2P2MJZ7	2.33e-15	59.38	Uncharacterized protein LOC103965579 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A199VDA8	1.32e-09	55.93	Putative polyamine oxidase 2 OS=Ananas comosus OX=4615 GN=ACMD2_00651 PE=4 SV=1	[more]
B6UEU4	4.41e-06	66.67	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A1D6JES6	5.67e-06	66.67	Uncharacterized protein OS=Zea mays OX=4577 GN=103642073 PE=4 SV=1	[more]

BLAST of MC11g0776.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59052.1	2.9e-04	42.86	conserved peptide upstream open reading frame 18	[more]
AT2G43018.1	4.9e-04	44.26	conserved peptide upstream open reading frame 17	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0776	MC11g0776	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0776.1-cds	MC11g0776.1-cds-MC11:6271639..6271836	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0776.1	MC11g0776.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016491	oxidoreductase activity