MC11g0748.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0748.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	MC11: 6055767 .. 6056441 (+)
Sequence length	432
RNA-Seq Expression	MC11g0748.1
Synteny	MC11g0748.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCGGGAAGGAAATGGTATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCTATGCTTAGCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTCGATCGTCTTACTTCAGGCAGGATTATATTTACTTGGTTTGTCTTATTAGCTTTATCATATAAAATAGAATTTTGTACTTCAACTAGTTATAAATTTACAAATATAGCTTTGAAGATTTTGTCACTTGCTAGGTTTAGGGGAAGTTTATGCATCATACATGATATTCTATCATAATTACCTTTTTTCTTGTATTGGATGAAAAAAATGCAGCTTCTGAGTCTCATGGTTTTTTCAACAGTGTGAAAAGTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA

mRNA sequence

ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCGGGAAGGAAATGGTATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCTATGCTTAGCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTCGATCTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA

Coding sequence (CDS)

ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCGGGAAGGAAATGGTATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCTATGCTTAGCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTCGATCTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA

Protein sequence

MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

Homology

[Close]

BLAST of MC11g0748.1 vs. NCBI nr
Match: XP_022143160.1 (uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143168.1 uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143175.1 uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143183.1 uncharacterized protein LOC111013092 [Momordica charantia])

HSP 1 Score: 248 bits (634), Expect = 3.35e-82
Identity = 137/144 (95.14%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI
Sbjct: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD +    +ELDQLLEDAPFPFIMQHASRISNVRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRLT---SELDQLLEDAPFPFIMQHASRISNVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGNL 144
           LNSILRSIQRRVDNIDRAIAMGNL
Sbjct: 121 LNSILRSIQRRVDNIDRAIAMGNL 141

[Close]

BLAST of MC11g0748.1 vs. NCBI nr
Match: XP_023535159.1 (uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535161.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535162.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198 bits (503), Expect = 3.02e-62
Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPE  L+  AN+DSNVSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSNVSVELETSISRNGGLQEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I +   ELDQLLEDAPFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITI---ELDQLLEDAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 143
           LNSILRSIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILRSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MC11g0748.1 vs. NCBI nr
Match: XP_022976873.1 (uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976875.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976876.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976877.1 uncharacterized protein LOC111477110 [Cucurbita maxima])

HSP 1 Score: 196 bits (499), Expect = 1.23e-61
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPE  L+  AN+DS+ SVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I    TELDQLLEDAPFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRIT---TELDQLLEDAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 143
           LNSILRSIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILRSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MC11g0748.1 vs. NCBI nr
Match: XP_038897522.1 (uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida])

HSP 1 Score: 193 bits (491), Expect = 1.42e-60
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSN 60
           MHSPE  + + SAN++SNV  ELE S+S NG L+EGN   N NLGN++ +A GLSSML N
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVL 120
           IIRDFDSKADDTLKSQSQLSSSLD +    TELDQLLEDAPFPFIMQHASRISNVRKRVL
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLT---TELDQLLEDAPFPFIMQHASRISNVRKRVL 120

Query: 121 SLNSILRSIQRRVDNIDRAIAMGNL 144
           SLNSILR+IQRRVDNIDRAI+MGNL
Sbjct: 121 SLNSILRTIQRRVDNIDRAISMGNL 142

[Close]

BLAST of MC11g0748.1 vs. NCBI nr
Match: XP_038897521.1 (uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida])

HSP 1 Score: 193 bits (491), Expect = 1.62e-60
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSN 60
           MHSPE  + + SAN++SNV  ELE S+S NG L+EGN   N NLGN++ +A GLSSML N
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVL 120
           IIRDFDSKADDTLKSQSQLSSSLD +    TELDQLLEDAPFPFIMQHASRISNVRKRVL
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLT---TELDQLLEDAPFPFIMQHASRISNVRKRVL 120

Query: 121 SLNSILRSIQRRVDNIDRAIAMGNL 144
           SLNSILR+IQRRVDNIDRAI+MGNL
Sbjct: 121 SLNSILRTIQRRVDNIDRAISMGNL 142

[Close]

BLAST of MC11g0748.1 vs. ExPASy TrEMBL
Match: A0A6J1CN29 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Momordica charantia OX=3673 GN=LOC111013092 PE=3 SV=1)

HSP 1 Score: 248 bits (634), Expect = 1.62e-82
Identity = 137/144 (95.14%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI
Sbjct: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD +    +ELDQLLEDAPFPFIMQHASRISNVRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRLT---SELDQLLEDAPFPFIMQHASRISNVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGNL 144
           LNSILRSIQRRVDNIDRAIAMGNL
Sbjct: 121 LNSILRSIQRRVDNIDRAIAMGNL 141

[Close]

BLAST of MC11g0748.1 vs. ExPASy TrEMBL
Match: A0A6J1IKP2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111477110 PE=3 SV=1)

HSP 1 Score: 196 bits (499), Expect = 5.94e-62
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPE  L+  AN+DS+ SVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I    TELDQLLEDAPFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRIT---TELDQLLEDAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 143
           LNSILRSIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILRSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MC11g0748.1 vs. ExPASy TrEMBL
Match: A0A6J1F9C2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 193 bits (491), Expect = 1.23e-60
Identity = 111/147 (75.51%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPE  L+  AN+DS+VSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLD----LIVLTLTELDQLLEDAPFPFIMQHASRISNVRK 120
           IRDFDSKADDTLKSQSQLSSSLD    +I  T TELDQLLE APFPFIMQHASRIS+VRK
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTVITSTFTELDQLLEAAPFPFIMQHASRISSVRK 120

Query: 121 RVLSLNSILRSIQRRVDNIDRAIAMGN 143
           RVLSLNSIL SIQRR+DNIDRAI+MGN
Sbjct: 121 RVLSLNSILGSIQRRLDNIDRAISMGN 147

[Close]

BLAST of MC11g0748.1 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 192 bits (488), Expect = 2.81e-60
Identity = 110/143 (76.92%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MHSPEGELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSNI 60
           MHSPE  L+  AN+DS+VSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NI
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  IRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVLS 120
           IRDFDSKADDTLKSQSQLSSSLD I    TELDQLLE APFPFIMQHASRIS+VRKRVLS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRIT---TELDQLLEAAPFPFIMQHASRISSVRKRVLS 120

Query: 121 LNSILRSIQRRVDNIDRAIAMGN 143
           LNSIL SIQRR+DNIDRAI+MGN
Sbjct: 121 LNSILGSIQRRLDNIDRAISMGN 140

[Close]

BLAST of MC11g0748.1 vs. ExPASy TrEMBL
Match: A0A1S3BAU4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=3 SV=1)

HSP 1 Score: 188 bits (478), Expect = 8.75e-59
Identity = 110/145 (75.86%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLREGNGIANMNLGNADTVAKGLSSMLSN 60
           MH PE  + + SAN+DSNVS ELE S+S  G L+EGN   N NLGN++ +A GLSSML N
Sbjct: 1   MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 61  IIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASRISNVRKRVL 120
           IIRDFDSKADDTLKSQ+ LSSSLD +    TELDQLLEDAPFPFIMQHASRISNVRKRVL
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLT---TELDQLLEDAPFPFIMQHASRISNVRKRVL 120

Query: 121 SLNSILRSIQRRVDNIDRAIAMGNL 144
           SLNSILR+IQRRVDNIDRAI MGNL
Sbjct: 121 SLNSILRTIQRRVDNIDRAITMGNL 142

[Close]

BLAST of MC11g0748.1 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-25
Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 44  GNADTVAKGLSSMLSNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPF 103
           G  + +A+GLS+ML ++I+DFDSKA DTL SQ +LS SLD +V    ELDQLLE+AP PF
Sbjct: 32  GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLV---QELDQLLENAPLPF 91

Query: 104 IMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIA 141
           I+QHASRIS+V++RV SLN +L+S+QRR+DNID  ++
Sbjct: 92  IVQHASRISSVKQRVSSLNLVLKSVQRRIDNIDHMLS 125

The following BLAST results are available for this feature:

BLAST of MC11g0748.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0748.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143160.1	3.35e-82	95.14	uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143168.1 uncha...	[more]
XP_023535159.1	3.02e-62	78.32	uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160....	[more]
XP_022976873.1	1.23e-61	77.62	uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharac...	[more]
XP_038897522.1	1.42e-60	77.24	uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]	[more]
XP_038897521.1	1.62e-60	77.24	uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]	[more]

BLAST of MC11g0748.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN29	1.62e-82	95.14	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Momordica chara...	[more]
A0A6J1IKP2	5.94e-62	77.62	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1F9C2	1.23e-60	75.51	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1FEP4	2.81e-60	76.92	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A1S3BAU4	8.75e-59	75.86	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX...	[more]

BLAST of MC11g0748.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	1.0e-25	60.82	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 49..135 e-value: 4.6E-17 score: 62.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 5..143

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0748	MC11g0748	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0748.1-cds	MC11g0748.1-cds-MC11:6055767..6056016	CDS
MC11g0748.1-cds	MC11g0748.1-cds-MC11:6056260..6056441	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0748.1	MC11g0748.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex