MC11g0740.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0740.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	At4g19430
Location	MC11: 5974492 .. 5974824 (-)
Sequence length	333
RNA-Seq Expression	MC11g0740.1
Synteny	MC11g0740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAGAAAAAAAAAAGATCAATTTTAATGAGAGAGAGAGAGAAAGGAGTGGCCATTGTGCATACAGGGAAATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTCGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATG

mRNA sequence

AAAAAGAAAGAAAAAAAAAAGATCAATTTTAATGAGAGAGAGAGAGAAAGGAGTGGCCATTGTGCATACAGGGAAATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTCGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATG

Coding sequence (CDS)

AAAAAGAAAGAAAAAAAAAAGATCAATTTTAATGAGAGAGAGAGAGAAAGGAGTGGCCATTGTGCATACAGGGAAATGGTGAGTGAGCTTGGAGATGGCAAAGGAAAAAGAAGAAAAAGAAGAAAGAAGACTCAATTCGGGGCTGTTTTTCAGTTGAATTTGTGGTACTTTGCTTCAACAATCAGCCATATCTTAAGGAAGGCCAAAGCCTTCTACAATGAGTGTTGCTGTGATGCCTATGAGGATGGGAAGATTGTTGAAGTTACTTTGGTTGATCCTTATTTCTCAATGCCTGCTTTGCCTTGTACTTCTTATTCTATGGCTAATTGTATG

Protein sequence

KKKEKKKINFNERERERSGHCAYREMVSELGDGKGKRRKRRKKTQFGAVFQLNLWYFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM

Homology

[Close]

BLAST of MC11g0740.1 vs. NCBI nr
Match: KAA0052276.1 (hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 1.46e-33
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 2   KKEKKKINFNERERERSGHCAYREMV--SELGDGKGKRRKRR-KKTQFGA---VFQLNLW 61
           KK +KKI     +RER+G+ +Y+E+   +E GD KG+RR+RR KK QFG    V  +N W
Sbjct: 15  KKGRKKIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFW 74

Query: 62  YFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 111
           YF STISHILRKAKAFYNECCCDAYED ++ +   +DPYFSMP LP T+  MANC+
Sbjct: 75  YFTSTISHILRKAKAFYNECCCDAYEDERMFQS--IDPYFSMPVLPYTT--MANCL 126

[Close]

BLAST of MC11g0740.1 vs. NCBI nr
Match: KAG6608012.1 (hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 4.05e-33
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  ERERSGHCAYREM----VSELGDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTI 73
           ERER+GH +  +       + GDGKG+RR     +RRK TQFGA   V Q N+WYF STI
Sbjct: 27  ERERTGHFSTSQHGHHESEQPGDGKGRRREKKQGRRRKTTQFGAARQVLQWNMWYFTSTI 86

Query: 74  SHILRKAKAFYNECCCDAYEDGKI--VEVTLVDPYFSMPALPCTSYSMANCM 111
           S+ILRKAKAFYNECCCDAYED ++  VEV +VDPYFSMP  P T+  MANCM
Sbjct: 87  SYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYTT--MANCM 136

[Close]

BLAST of MC11g0740.1 vs. NCBI nr
Match: XP_022940822.1 (uncharacterized protein LOC111446301 [Cucurbita moschata])

HSP 1 Score: 122 bits (306), Expect = 4.05e-33
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  ERERSGHCAYREM----VSELGDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTI 73
           ERER+GH +  +       + GDGKG+RR     +RRK TQFGA   V Q N+WYF STI
Sbjct: 27  ERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTI 86

Query: 74  SHILRKAKAFYNECCCDAYEDGKI--VEVTLVDPYFSMPALPCTSYSMANCM 111
           S+ILRKAKAFYNECCCDAYED ++  VEV +VDPYFSMP  P T+  MANCM
Sbjct: 87  SYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYTT--MANCM 136

[Close]

BLAST of MC11g0740.1 vs. NCBI nr
Match: TYK01842.1 (hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (306), Expect = 4.17e-33
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 2   KKEKKKINFNERERERSGHCAYREMV--SELGDGKGKRRKRR-KKTQFGA---VFQLNLW 61
           KK +K+I     +RER+G+ +Y+E+   +E GD KG+RR+RR KK QFG    V  +N W
Sbjct: 15  KKGRKRIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFW 74

Query: 62  YFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 111
           YF STISHILRKAKAFYNECCCDAYED ++ +   +DPYFSMP LP T+  MANC+
Sbjct: 75  YFTSTISHILRKAKAFYNECCCDAYEDERMFQS--IDPYFSMPVLPYTT--MANCL 126

[Close]

BLAST of MC11g0740.1 vs. NCBI nr
Match: KGN55571.1 (hypothetical protein Csa_012627 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 1.37e-32
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 2   KKEKKKINFNERERERSGHCAYREMVS--ELGDGKGKRR-KRRKKTQFGA---VFQLNLW 61
           KK KK+I     +RE +G+ +Y+++    E G+ KG+RR KRRKK QFG    V  +N W
Sbjct: 15  KKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFW 74

Query: 62  YFASTISHILRKAKAFYNECCCDAYEDGKIV--EVTLVDPYFSMPALPCTSYSMANCM 111
           YF STISHILRKAKAFYNECCCDA+ED ++   EV  +DPYFSMP LP T+  MANCM
Sbjct: 75  YFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYTT--MANCM 130

[Close]

BLAST of MC11g0740.1 vs. ExPASy TrEMBL
Match: A0A5A7UDK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001040 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 7.07e-34
Identity = 68/116 (58.62%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 2   KKEKKKINFNERERERSGHCAYREMV--SELGDGKGKRRKRR-KKTQFGA---VFQLNLW 61
           KK +KKI     +RER+G+ +Y+E+   +E GD KG+RR+RR KK QFG    V  +N W
Sbjct: 15  KKGRKKIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFW 74

Query: 62  YFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 111
           YF STISHILRKAKAFYNECCCDAYED ++ +   +DPYFSMP LP T+  MANC+
Sbjct: 75  YFTSTISHILRKAKAFYNECCCDAYEDERMFQS--IDPYFSMPVLPYTT--MANCL 126

[Close]

BLAST of MC11g0740.1 vs. ExPASy TrEMBL
Match: A0A6J1FKP2 (uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC111446301 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 1.96e-33
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  ERERSGHCAYREM----VSELGDGKGKRR-----KRRKKTQFGA---VFQLNLWYFASTI 73
           ERER+GH +  +       + GDGKG+RR     +RRK TQFGA   V Q N+WYF STI
Sbjct: 27  ERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQGRRRKTTQFGAARQVLQWNMWYFTSTI 86

Query: 74  SHILRKAKAFYNECCCDAYEDGKI--VEVTLVDPYFSMPALPCTSYSMANCM 111
           S+ILRKAKAFYNECCCDAYED ++  VEV +VDPYFSMP  P T+  MANCM
Sbjct: 87  SYILRKAKAFYNECCCDAYEDERMKRVEVAMVDPYFSMPVFPYTT--MANCM 136

[Close]

BLAST of MC11g0740.1 vs. ExPASy TrEMBL
Match: A0A5D3BSQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00900 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.02e-33
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 2   KKEKKKINFNERERERSGHCAYREMV--SELGDGKGKRRKRR-KKTQFGA---VFQLNLW 61
           KK +K+I     +RER+G+ +Y+E+   +E GD KG+RR+RR KK QFG    V  +N W
Sbjct: 15  KKGRKRIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKGQFGTTRDVLHMNFW 74

Query: 62  YFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPALPCTSYSMANCM 111
           YF STISHILRKAKAFYNECCCDAYED ++ +   +DPYFSMP LP T+  MANC+
Sbjct: 75  YFTSTISHILRKAKAFYNECCCDAYEDERMFQS--IDPYFSMPVLPYTT--MANCL 126

[Close]

BLAST of MC11g0740.1 vs. ExPASy TrEMBL
Match: A0A0A0L609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 6.66e-33
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 2   KKEKKKINFNERERERSGHCAYREMVS--ELGDGKGKRR-KRRKKTQFGA---VFQLNLW 61
           KK KK+I     +RE +G+ +Y+++    E G+ KG+RR KRRKK QFG    V  +N W
Sbjct: 15  KKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFW 74

Query: 62  YFASTISHILRKAKAFYNECCCDAYEDGKIV--EVTLVDPYFSMPALPCTSYSMANCM 111
           YF STISHILRKAKAFYNECCCDA+ED ++   EV  +DPYFSMP LP T+  MANCM
Sbjct: 75  YFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYTT--MANCM 130

[Close]

BLAST of MC11g0740.1 vs. ExPASy TrEMBL
Match: A0A1Q3D8H6 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32173 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.11e-16
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 51  QLNLWYFASTISHILRKAKAFYNECCCDAYEDGKIV--EVTLVDPYFSMPALP 101
           +L +WY  S+IS+ILRKAKAFYNECCCDA+ED  ++  +VTLVD YFS P +P
Sbjct: 57  RLGIWYMTSSISYILRKAKAFYNECCCDAFEDPVLMGKQVTLVDSYFSTPVVP 109

[Close]

BLAST of MC11g0740.1 vs. TAIR 10
Match: AT4G19430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 54  LWYFASTISHILRKAKAFYNECCCDAYEDGKIVEVTLVDPYFSMPAL 101
           LWY   +ISHILRKA+AFYNE CCD Y +   + V  V+PYFS+P +
Sbjct: 115 LWYMKCSISHILRKARAFYNEFCCDTYAESNTMAV--VEPYFSIPVI 159

The following BLAST results are available for this feature:

BLAST of MC11g0740.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052276.1	1.46e-33	58.62	hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa]	[more]
KAG6608012.1	4.05e-33	60.71	hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940822.1	4.05e-33	60.71	uncharacterized protein LOC111446301 [Cucurbita moschata]	[more]
TYK01842.1	4.17e-33	57.76	hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa]	[more]
KGN55571.1	1.37e-32	57.63	hypothetical protein Csa_012627 [Cucumis sativus]	[more]

BLAST of MC11g0740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDK1	7.07e-34	58.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1FKP2	1.96e-33	60.71	uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A5D3BSQ8	2.02e-33	57.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L609	6.66e-33	57.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1	[more]
A0A1Q3D8H6	6.11e-16	64.15	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]

BLAST of MC11g0740.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19430.1	1.6e-10	57.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0740	MC11g0740	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0740.1-cds	MC11g0740.1-cds-MC11:5974492..5974824	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0740.1	MC11g0740.1-protein	polypeptide