MC11g0629.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0629.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein 6, chloroplastic
Location	MC11: 5058016 .. 5058318 (-)
Sequence length	303
RNA-Seq Expression	MC11g0629.1
Synteny	MC11g0629.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTCGTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACATCCGGCGCCAGCCAACTGTGTATCCTCCTCTGCCGCCTCTCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG

mRNA sequence

ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTCGTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACATCCGGCGCCAGCCAACTGTGTATCCTCCTCTGCCGCCTCTCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG

Coding sequence (CDS)

ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTCGTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACATCCGGCGCCAGCCAACTGTGTATCCTCCTCTGCCGCCTCTCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG

Protein sequence

MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE

Homology

[Close]

BLAST of MC11g0629.1 vs. ExPASy Swiss-Prot
Match: P82411 (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-21
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSAS------KLPP-----CPGGNLVIECSSRPTKKATAHHM 60
           MS+S  FG R+   P    ++S      KL P     C GG + IECSSRP KK TAHHM
Sbjct: 1   MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60

Query: 61  KTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDAN 90
           KTRP+KT  WDI+R P VYPPLPPLP +WT+VSS   +A+
Sbjct: 61  KTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEAD 100

[Close]

BLAST of MC11g0629.1 vs. ExPASy Swiss-Prot
Match: Q9FKP0 (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-20
Identity = 52/98 (53.06%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 1  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKT 60
          MS+S  FG  I    + P L      KL    G  +VIECSSRP KK+TAHH KTRP+KT
Sbjct: 1  MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 61 QPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA 95
          QPWDI+R+PTVY PLPPLP +W+  +  S D     AA
Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAA 98

[Close]

BLAST of MC11g0629.1 vs. ExPASy Swiss-Prot
Match: P11892 (50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-18
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 2   SISTFFGCRISVPPLPDL-----SASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKT 61
           S+S+ FGC +S+ P   L        +   C  G L+IECSSRP KK+TAHHMKTRPRK+
Sbjct: 3   SVSSIFGCGVSMAPNSSLRNKAIRTERRSAC--GGLLIECSSRPQKKSTAHHMKTRPRKS 62

Query: 62  QPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPT 100
           +  D  R+PTVY PLPPLPPD+T+V  +  DA+       PPT
Sbjct: 63  RLSDRNRKPTVYAPLPPLPPDFTIV--IPADASTVDFTPPPPT 101

[Close]

BLAST of MC11g0629.1 vs. NCBI nr
Match: XP_022136057.1 (50S ribosomal protein 6, chloroplastic [Momordica charantia])

HSP 1 Score: 210 bits (535), Expect = 1.17e-68
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD
Sbjct: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE 101
           IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE
Sbjct: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE 101

[Close]

BLAST of MC11g0629.1 vs. NCBI nr
Match: XP_011652886.1 (50S ribosomal protein 6, chloroplastic [Cucumis sativus])

HSP 1 Score: 169 bits (427), Expect = 4.11e-52
Identity = 85/106 (80.19%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTF GC+ISVPPL + SASK  PC  GNL+IECSSRP KKATAHHMKTRPRK+QPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQAPPTSE 101
           IRR+PTVYPPLPPLPPDWTLVSSVSGD NVE A     AQAP TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106

[Close]

BLAST of MC11g0629.1 vs. NCBI nr
Match: XP_008466097.1 (PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 50S ribosomal protein 6 [Cucumis melo var. makuwa] >TYK31235.1 50S ribosomal protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 8.29e-52
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQAPPTSE 101
           IRR+PTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQAP TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of MC11g0629.1 vs. NCBI nr
Match: KAG7024601.1 (50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166 bits (421), Expect = 3.48e-51
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTFFG RISVPPL + SASK  PC GGNLVIECSSRP+KKATAHHMKTRPRK+QPWD
Sbjct: 1   MSISTFFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPSKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA------QAPPTSE 101
           IRR+PTVYPPLPPLPPDWT+VSS+S D  VE AA      QAPPT+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVAASSASSAQAPPTTE 107

[Close]

BLAST of MC11g0629.1 vs. NCBI nr
Match: XP_023536142.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166 bits (420), Expect = 4.95e-51
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTFFG RISVPPL + SASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWD
Sbjct: 1   MSISTFFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA------AQAPPTSE 101
           IRR+PTVYPPLPPLPPDWT+VSS+S D  VE A      AQAPPT+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of MC11g0629.1 vs. ExPASy TrEMBL
Match: A0A6J1C4H7 (50S ribosomal protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007842 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 5.68e-69
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD
Sbjct: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE 101
           IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE
Sbjct: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE 101

[Close]

BLAST of MC11g0629.1 vs. ExPASy TrEMBL
Match: A0A0A0LHS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 1.99e-52
Identity = 85/106 (80.19%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTF GC+ISVPPL + SASK  PC  GNL+IECSSRP KKATAHHMKTRPRK+QPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQAPPTSE 101
           IRR+PTVYPPLPPLPPDWTLVSSVSGD NVE A     AQAP TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106

[Close]

BLAST of MC11g0629.1 vs. ExPASy TrEMBL
Match: A0A5A7TB88 (50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005220 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 4.01e-52
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQAPPTSE 101
           IRR+PTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQAP TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of MC11g0629.1 vs. ExPASy TrEMBL
Match: A0A1S3CQF4 (50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 4.01e-52
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQAPPTSE 101
           IRR+PTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQAP TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of MC11g0629.1 vs. ExPASy TrEMBL
Match: A0A6J1F7W7 (50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442914 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 1.39e-50
Identity = 83/107 (77.57%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWD 60
           MSIST+FG RISVPPL + SASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWD
Sbjct: 1   MSISTYFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA------AQAPPTSE 101
           IRR+PTVYPPLPPLPPDWT VSS+S D  VE A      AQAPPT+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTAVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of MC11g0629.1 vs. TAIR 10
Match: AT5G17870.1 (plastid-specific 50S ribosomal protein 6 )

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-21
Identity = 52/98 (53.06%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 1  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKT 60
          MS+S  FG  I    + P L      KL    G  +VIECSSRP KK+TAHH KTRP+KT
Sbjct: 1  MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 61 QPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA 95
          QPWDI+R+PTVY PLPPLP +W+  +  S D     AA
Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAA 98

The following BLAST results are available for this feature:

BLAST of MC11g0629.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82411	5.1e-21	54.00	50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=...	[more]
Q9FKP0	5.6e-20	53.06	50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 ...	[more]
P11892	3.1e-18	50.49	50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV...	[more]

BLAST of MC11g0629.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136057.1	1.17e-68	100.00	50S ribosomal protein 6, chloroplastic [Momordica charantia]	[more]
XP_011652886.1	4.11e-52	80.19	50S ribosomal protein 6, chloroplastic [Cucumis sativus]	[more]
XP_008466097.1	8.29e-52	79.25	PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 5...	[more]
KAG7024601.1	3.48e-51	78.50	50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_023536142.1	4.95e-51	78.50	50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC11g0629.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4H7	5.68e-69	100.00	50S ribosomal protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0LHS7	1.99e-52	80.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1	[more]
A0A5A7TB88	4.01e-52	79.25	50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQF4	4.01e-52	79.25	50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 P...	[more]
A0A6J1F7W7	1.39e-50	77.57	50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of MC11g0629.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17870.1	4.0e-21	53.06	plastid-specific 50S ribosomal protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020526	Ribosomal protein L6, chloroplast	PFAM	PF17257	DUF5323	coord: 29..86 e-value: 1.2E-37 score: 127.6
IPR020526	Ribosomal protein L6, chloroplast	PANTHER	PTHR36798	50S RIBOSOMAL PROTEIN 6, CHLOROPLASTIC	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..74
None	No IPR available	PANTHER	PTHR36798:SF2	50S RIBOSOMAL PROTEIN 6, CHLOROPLASTIC	coord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0629	MC11g0629	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0629.1-cds	MC11g0629.1-cds-MC11:5058016..5058318	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0629.1	MC11g0629.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome