MC11g0607.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0607.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription initiation factor IIA subunit 2
Location	MC11: 4788329 .. 4791351 (-)
Sequence length	1906
RNA-Seq Expression	MC11g0607.1
Synteny	MC11g0607.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCTAACGTTAACCCAGTTAGAATCAAGAAACCAGGAGCATCACAAACTCACCACCAATCTGTAGCTTCAATTCCTTCCTTGTACTCTCTCTTTATTTTTTTTTACATTCCTTTTCGAATTGATCTCTTGCTTTAATTTCGAAGATTTTGCCAGCTTTCTCGAATTCTGATGCTATGTTCCAAAATTTTCTTTAGTTTTGTCGATTCCGGATGTGTGTTTTTGGACTGATTTTGATATCTTAGACGAAGAACTTACGTATTTAGCAGATCTTGTTTTCGAAGCAGAATGGCGACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTACAGTCAGACCTGGTTTGGAAGCTGTGTTTATGTGTATATTTTTGGATTTGTGTTCAGAATTAGAAGGTCTTTTTTTATTTAATTTTTACCGCTTTTGGCTTTTGCAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATATTTGCCAATTGTCCTGCTTATGAATTCGACATATCTTTGAATGACAGATTTAAGTTGGTGGATAATGTCAAATTACGAACTTTTCATCAAAAAAATATTATAAACTTGAAATGTGTTTTCATTCATAAGAGGGATTGGTTGTTTTGCTTGCCTGTTCTGTTCTGCTGAAGTGCTCATCTTAGTAATCTGGAGCCAAATTGTTTCCGTCAGTAACACGTTTATACGTTGAATGCAAAGTAGAATATTTTCTCGTGATCTTTTGGGGTTGCTCCCAGTGCAATTTACAGCATGAAAACATTTGTATTTGTAAGTTAAAAGTTTCATTTATGGAACTTTTGATTTATACCAATAGATTAGGTTACTTGCCTCTTTCTGTCTCTGTTCTTTTTGTTGATACCTGAAATAGTTTCCAGTATTAGAATTTTTTTCGTAGATTTGGAATCTTGTGATAAAGTATCTGCCATTAGGGGCGTTGCTCCAGTTATTTCAGGTTTTACCATATGTTTTTATGTCAAACTGAAATTCCCTTATTCGAGCTTTCAAGTTTCTTTTTTTCCAAGTGCTGTTGGATTTTGTAAGTTCATTGTTCAGAGATTGTGTGTAAGAATTATGGTTTTTATTTGAGAGCAGTGATGAAATCACAATCACACAGCAAGGTTTAAGAATTTATTTCTCTTTTTTCTTTCATAAGACTAATCCGTTTGTTATTTCCTTCCTCATTTTACAAAGTGAATTTATTTCACAAGGCCCCCCTAACCCATACTCTTCAGTTGATATCTAAACCTCGTCGTCCTCCTGCTGTTTGTTTTGCAACAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGACCTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGAATGTTGGGAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGATGAGCTTTCAGACAAAATTTGCATAATTATTTGCTGATGGACAAGGGGAATTGTTGCGAGGAAGAAATAGCAATCCATGTCATTGTTTGAAAGTCGCAAAGATTCAAACGTGATTCTGTAAAGTCATCGATCTGAACAGCAGAAAGTTAGTTTCTCGCACATTGACGTTACATTTGACTGTAAATTGGCTTCTGAGGCTGATTCCATGACAATTATACGAACCTTTTAGTTTAATGATAATAAAACATGATGTATCTGTTCTAATATTATCACTTTCTAGTCTTAATTTGTACTACTATCTCTACCCTTTTCTCCATGAGGATTCAAGTTTCTACTTCTAATCGATATCATGAACAAGATTATACCTATTTTCAAGTAGTTGTGATCTCCTTTTCGCTTAATTTGGGAGACAATTACATTCTCCAAAAACGTCTTAAATCATTCATGTACATACCAAAAAACATGTCTTTTCAGTATACATCCTTTAAGTACCAGTAACCAAGTTCTTTTCATAAAACAGTTCTACATGAACATAATTTCAGCCAACAATTTGTCATCCAGAACCCTGAGGAATCATGTCAAGCTGTCAACATCTTGATGGAAAGTCAACAATTTCAAGAACAAAATACATTGAAAAAAAAGTTGGATAAAATATCTGGGATACTTGATTTGTCGCTTGTCACTAATAACCTTTGTTCCCGGAAAATAGTATACAACAAAAGAAAAAGGCAAAGATTATGAGAGAACGATGACTTTACATGTAGACCTGTCAGAACTGTTCCTGGACATTTGTTCAGTTTGATATCACACTGATCCTGATCGTACCAACCAACATGGACTTCTAATCCTTAATGAATCTTTAAGAATGAAGATGACACAATATAGTAATTTAATATTAACTTTAATTAGCAAGTAAAGAACCCTTTGATAATATAAATTTTACCCAAAAATAAGATTTTCATGTCGACACACACTTGTCCCGAAGCATTCCCATTTTCCTGATGCTCATCTGGACTTCAATGCCTGCCCTGCAGAAGGCCAAAAAAAATGTTTACTTACCTGTTCTAAATAGTTTAGATGACGACCTCTCCATTTAATCTTAATACCGACAAAGAATAAAGTTGAGAATGCACATTAAAATTGAAGAACTCGGTATCTAGTTAGTGTTGCAAAAGGAAAATATGTGTCAGAAACTGCAAAAGTTTCTTCACTGGATGGAACAATTATGAGAAAGAGCTCCGAACTAGAACTAACTTCTACCATGCATTCTCAGAAACAAAAGGAAAAAGAAAAGCAATAAATGAGTTCTCAATCAGATATCAAAGTCTCCTGTGACAGACCTTGCGCTTCTTATGTTTTCTCATTCCGCTGCTACTTCTACCAAAACCTGTCGGTAGCTCACGATCAGCACCTTCCATGGGCAAGGTTTTTATTTCGTCATAGAAGCTGTCAGTTA

mRNA sequence

CAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCTAACGTTAACCCAGTTAGAATCAAGAAACCAGGAGCATCACAAACTCACCACCAATCTGTAGCTTCAATTCCTTCCTTATCTTGTTTTCGAAGCAGAATGGCGACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGACCTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGAATGTTGGGAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGATGAGCTTTCAGACAAAATTTGCATAATTATTTGCTGATGGACAAGGGGAATTGTTGCGAGGAAGAAATAGCAATCCATGTCATTGTTTGAAAGTCGCAAAGATTCAAACGTGATTCTGTAAAGTCATCGATCTGAACAGCAGAAAGTTAGTTTCTCGCACATTGACGTTACATTTGACTGTAAATTGGCTTCTGAGGCTGATTCCATGACAATTATACGAACCTTTTAGTTTAATGATAATAAAACATGATGTATCTGTTCTAATATTATCACTTTCTAGTCTTAATTTGTACTACTATCTCTACCCTTTTCTCCATGAGGATTCAAGTTTCTACTTCTAATCGATATCATGAACAAGATTATACCTATTTTCAAGTAGTTGTGATCTCCTTTTCGCTTAATTTGGGAGACAATTACATTCTCCAAAAACGTCTTAAATCATTCATGTACATACCAAAAAACATGTCTTTTCAGTATACATCCTTTAAGTACCAGTAACCAAGTTCTTTTCATAAAACAGTTCTACATGAACATAATTTCAGCCAACAATTTGTCATCCAGAACCCTGAGGAATCATGTCAAGCTGTCAACATCTTGATGGAAAGTCAACAATTTCAAGAACAAAATACATTGAAAAAAAAGTTGGATAAAATATCTGGGATACTTGATTTGTCGCTTGTCACTAATAACCTTTGTTCCCGGAAAATAGTATACAACAAAAGAAAAAGGCAAAGATTATGAGAGAACGATGACTTTACATGTAGACCTGTCAGAACTGTTCCTGGACATTTGTTCAGTTTGATATCACACTGATCCTGATCGTACCAACCAACATGGACTTCTAATCCTTAATGAATCTTTAAGAATGAAGATGACACAATATAGTAATTTAATATTAACTTTAATTAGCAAGTAAAGAACCCTTTGATAATATAAATTTTACCCAAAAATAAGATTTTCATGTCGACACACACTTGTCCCGAAGCATTCCCATTTTCCTGATGCTCATCTGGACTTCAATGCCTGCCCTGCAGAAGGCCAAAAAAAATGTTTACTTACCTGTTCTAAATAGTTTAGATGACGACCTCTCCATTTAATCTTAATACCGACAAAGAATAAAGTTGAGAATGCACATTAAAATTGAAGAACTCGGTATCTAGTTAGTGTTGCAAAAGGAAAATATGTGTCAGAAACTGCAAAAGTTTCTTCACTGGATGGAACAATTATGAGAAAGAGCTCCGAACTAGAACTAACTTCTACCATGCATTCTCAGAAACAAAAGGAAAAAGAAAAGCAATAAATGAGTTCTCAATCAGATATCAAAGTCTCCTGTGACAGACCTTGCGCTTCTTATGTTTTCTCATTCCGCTGCTACTTCTACCAAAACCTGTCGGTAGCTCACGATCAGCACCTTCCATGGGCAAGGTTTTTATTTCGTCATAGAAGCTGTCAGTTA

Coding sequence (CDS)

CAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCTAACGTTAACCCAGTTAGAATCAAGAAACCAGGAGCATCACAAACTCACCACCAATCTGTAGCTTCAATTCCTTCCTTATCTTGTTTTCGAAGCAGAATGGCGACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGACCTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGAATGTTGGGAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGA

Protein sequence

QISSLAKSFGANVNPVRIKKPGASQTHHQSVASIPSLSCFRSRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ

Homology

[Close]

BLAST of MC11g0607.1 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 5.9e-50
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 150
           GHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-48
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 150
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-48
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 150
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 51/99 (51.52%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 47  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 106
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 107 HTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK 146
            TYRFCD VWTFI+++ +F+ ++      +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]

BLAST of MC11g0607.1 vs. ExPASy Swiss-Prot
Match: Q90YG6 (Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss OX=8022 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-25
Identity = 50/99 (50.51%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 47  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 106
           ++LYR +T+G  L E+LDE++Q   ++P+LA+QVL+QFDK++  AL ++V+++V+ KG L
Sbjct: 3   YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSL 62

Query: 107 HTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK 146
           +TYRFCDNVWTF+L D  F+       V ++KIVACD K
Sbjct: 63  NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101

[Close]

BLAST of MC11g0607.1 vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 214 bits (545), Expect = 2.89e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of MC11g0607.1 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >KAG7024584.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 6.81e-68
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. NCBI nr
Match: XP_004287436.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. vesca] >XP_004493830.1 transcription initiation factor IIA subunit 2 [Cicer arietinum] >XP_004493831.1 transcription initiation factor IIA subunit 2 [Cicer arietinum] >XP_027188445.1 transcription initiation factor IIA subunit 2 [Cicer arietinum])

HSP 1 Score: 210 bits (535), Expect = 9.68e-68
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDA FKNEDSQENVGR+KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLSQ 106

[Close]

BLAST of MC11g0607.1 vs. NCBI nr
Match: CBI19296.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 212 bits (539), Expect = 1.53e-67
Identity = 111/137 (81.02%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 14  NPVRIKKPGA-SQTHHQSVASIPSLSCFRSRMATFELYRRSTIGMCLTETLDEMVQNGTL 73
           N  R ++PG  S+       S+PS S    RMATFELYRRSTIGMCLTETLDEMVQNGTL
Sbjct: 28  NNPRAQEPGEKSRQFCLCFLSLPSPSII-VRMATFELYRRSTIGMCLTETLDEMVQNGTL 87

Query: 74  SPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE 133
           SPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDA FKNE+SQE
Sbjct: 88  SPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEESQE 147

Query: 134 NVGRIKIVACDSKLLSQ 149
           NVGR+KIVACDSKLL+Q
Sbjct: 148 NVGRVKIVACDSKLLTQ 163

[Close]

BLAST of MC11g0607.1 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209 bits (533), Expect = 1.95e-67
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy TrEMBL
Match: A0A6J1BWA2 (Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=LOC111006284 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 1.40e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 211 bits (536), Expect = 3.30e-68
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy TrEMBL
Match: A0A6J1ILT9 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476437 PE=3 SV=1)

HSP 1 Score: 211 bits (536), Expect = 3.30e-68
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy TrEMBL
Match: A0A1S2XSF2 (Transcription initiation factor IIA subunit 2 OS=Cicer arietinum OX=3827 GN=LOC101503374 PE=3 SV=1)

HSP 1 Score: 210 bits (535), Expect = 4.68e-68
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDA FKNEDSQENVGR+KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLSQ 106

[Close]

BLAST of MC11g0607.1 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 209 bits (533), Expect = 9.45e-68
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 149
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-51
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 150
           GHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of MC11g0607.1 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-51
Identity = 97/106 (91.51%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 44  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 103
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 104 GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 150
           GHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of MC11g0607.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39236	5.9e-50	91.51	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XZI2	1.9e-48	88.68	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	1.9e-48	88.68	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
O74948	1.0e-25	51.52	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
Q90YG6	5.0e-25	50.51	Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss OX=8022 GN=...	[more]

BLAST of MC11g0607.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133819.1	2.89e-69	100.00	transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382...	[more]
XP_022936677.1	6.81e-68	98.11	transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678...	[more]
XP_004287436.1	9.68e-68	97.17	PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. ...	[more]
CBI19296.3	1.53e-67	81.02	unnamed protein product, partial [Vitis vinifera]	[more]
XP_022941425.1	1.95e-67	97.17	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]

BLAST of MC11g0607.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWA2	1.40e-69	100.00	Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1F935	3.30e-68	98.11	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ILT9	3.30e-68	98.11	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S2XSF2	4.68e-68	97.17	Transcription initiation factor IIA subunit 2 OS=Cicer arietinum OX=3827 GN=LOC1...	[more]
A0A6J1J100	9.45e-68	97.17	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of MC11g0607.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	4.2e-51	91.51	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	4.2e-51	91.51	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 46..97 e-value: 6.7E-24 score: 85.5
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 103..144 e-value: 1.2E-21 score: 76.6
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 100..145 e-value: 5.37877E-24 score: 85.7623
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 98..148 e-value: 5.9E-23 score: 82.4
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 95..145
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 47..92 e-value: 2.3E-22 score: 78.8
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 47..92 e-value: 4.36087E-23 score: 83.7691
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 38..149
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 38..149
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 47..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0607	MC11g0607	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0607.1-utr3	MC11g0607.1-utr3-MC11:4788329..4789784	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0607.1-cds	MC11g0607.1-cds-MC11:4789785..4789925	CDS
MC11g0607.1-cds	MC11g0607.1-cds-MC11:4790747..4790797	CDS
MC11g0607.1-cds	MC11g0607.1-cds-MC11:4790908..4791055	CDS
MC11g0607.1-cds	MC11g0607.1-cds-MC11:4791242..4791351	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0607.1	MC11g0607.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003743	translation initiation factor activity