MC11g0578.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0578.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	circumsporozoite protein-like
Location	MC11: 4518790 .. 4519236 (-)
Sequence length	447
RNA-Seq Expression	MC11g0578.1
Synteny	MC11g0578.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTTCAGGAGTCGGAGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGAGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCGGAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCGGCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGGAAGAAGA

mRNA sequence

ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTTCAGGAGTCGGAGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGAGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCGGAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCGGCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGGAAGAAGA

Coding sequence (CDS)

ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTTCAGGAGTCGGAGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGAGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCGGAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCGGCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGGAAGAAGA

Protein sequence

MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRR

Homology

[Close]

BLAST of MC11g0578.1 vs. NCBI nr
Match: XP_022136125.1 (circumsporozoite protein-like [Momordica charantia])

HSP 1 Score: 265 bits (677), Expect = 1.18e-88
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 TKANSTKNTKAEEAMAVKNAQRREENGRR 149
           TKANSTKNTKAEEAMAVKNAQRREENGRR
Sbjct: 121 TKANSTKNTKAEEAMAVKNAQRREENGRR 149

[Close]

BLAST of MC11g0578.1 vs. NCBI nr
Match: KGN60236.1 (hypothetical protein Csa_001434 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 1.06e-40
Identity = 99/146 (67.81%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDP  A LF  APLPGV+ GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEV V+GAG TP GA  ED    GGVAT  GGA  G++AG  LVGEEAGAAPGAWP+E A
Sbjct: 61  GEVAVKGAGATPDGARGEDD---GGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAA 120

Query: 121 TKANSTKNTKAEE-AMAVK-NAQRRE 144
            KA  T  TKAEE AM VK N +RRE
Sbjct: 121 IKAKRTTKTKAEEEAMVVKKNGKRRE 143

[Close]

BLAST of MC11g0578.1 vs. NCBI nr
Match: XP_023520820.1 (uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 50.8 bits (120), Expect = 3.61e-04
Identity = 42/90 (46.67%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 1  MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
          MID   + LF A PLPGVEAGDGA      +E  G                 E  GA A 
Sbjct: 1  MIDLETSILFTAPPLPGVEAGDGAV-----VEARG-----------------EIVGAIAS 60

Query: 61 GEVPVEGAGETPAGAGDEDGVDAGGVATAV 90
          GEVP++  G TP GA D+DGV+AG VAT V
Sbjct: 61 GEVPIDEEGGTPLGARDKDGVEAGRVATNV 68

[Close]

BLAST of MC11g0578.1 vs. ExPASy TrEMBL
Match: A0A6J1C301 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 5.74e-89
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 TKANSTKNTKAEEAMAVKNAQRREENGRR 149
           TKANSTKNTKAEEAMAVKNAQRREENGRR
Sbjct: 121 TKANSTKNTKAEEAMAVKNAQRREENGRR 149

[Close]

BLAST of MC11g0578.1 vs. ExPASy TrEMBL
Match: A0A0A0LJM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 5.14e-41
Identity = 99/146 (67.81%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDP  A LF  APLPGV+ GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEV V+GAG TP GA  ED    GGVAT  GGA  G++AG  LVGEEAGAAPGAWP+E A
Sbjct: 61  GEVAVKGAGATPDGARGEDD---GGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAA 120

Query: 121 TKANSTKNTKAEE-AMAVK-NAQRRE 144
            KA  T  TKAEE AM VK N +RRE
Sbjct: 121 IKAKRTTKTKAEEEAMVVKKNGKRRE 143

The following BLAST results are available for this feature:

BLAST of MC11g0578.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0578.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136125.1	1.18e-88	100.00	circumsporozoite protein-like [Momordica charantia]	[more]
KGN60236.1	1.06e-40	67.81	hypothetical protein Csa_001434 [Cucumis sativus]	[more]
XP_023520820.1	3.61e-04	46.67	uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC11g0578.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C301	5.74e-89	100.00	circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=...	[more]
A0A0A0LJM1	5.14e-41	67.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1	[more]

BLAST of MC11g0578.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0578	MC11g0578	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0578.1-cds	MC11g0578.1-cds-MC11:4518790..4519236	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0578.1	MC11g0578.1-protein	polypeptide