MC11g0512.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0512.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	replication protein A 32 kDa subunit A
Location	MC11: 3963009 .. 3967938 (-)
Sequence length	1138
RNA-Seq Expression	MC11g0512.1
Synteny	MC11g0512.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGAGCATCAATGGCGGGAAACAGAAAGCTTATACTTCACAAATCGTAACTTCGTATTTTCATCGCAATTCGTTCAGCGTCTCCGTTGTTGATTGTTGATCGAGTTCTTCCTCACAGGATTCTCGAGAATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCCCAGGTCCCCGACTCCACTTCGGCGAAGGTTAGTCGCCGATTTAACTTCTTAATTTCTGTTTGGTTGAATGAGAATTTCGGAAATAAATGTTAGATGTTAGAACAGCCTCAAAAGGAATCGATACTCTTCAAGCTGATGGATGCATAGAATCCGGCGAAATTGAAAGGGCGAGTCTAACTCGGTTTTCATTTTTAGACGAAGAAATTATCGAAGTATAAGTAGGCGTGTTCATAACGGGGATCAAATCCAGTTCCGTCATCCTCGGTTGTAGACGAAATTCCGTTTATCGAATTTGTACACTGGATAAAGCATGAGAGGAAACTGTGAATAAGATGGCGATTGGTGATTGCTTGATTTAATAATTTCTTAACAATCCGGACAGATTGCATTTTGTATTACCCTCTTGAACTCTTCCGTGCAGAGTCGAGAATCGCCGGGTTTAGTTCCAGTAACTGTAAAACAGATAAGCGAAGCTTTCCATTCCGGCGAAGAGAAAGCCAACTTTGTAATCAATGGCGTTGACATTACAAATGTATATTTCCTTGCCCTCTCTTTCAGTTTTAAAACTATTGTCGCTATGCACGTTAATAAATGTAGCAGACAGTTCACACGACAAGAAAATGCAGTATGTTAATTTTATCTGACAATGTAGTAACGCTTCCTTGTTCTTTTGTGCTATTCACATTAGTCATTGATTGTCTTCCTGTCTCCAACGATTGGTGATAAACGAAGGAACGTCTCTTTGTTGTGATTTGTTGTTGATTTTGGCTCTCTTTCCAACCATGGAGAGGCTTTATCTTTCCTCTAGACTAAAACTACTAGGAAATACGATTTACCTGCCTGCTCCCAAATTCTGGGGTTTGTTTAATCGTTTTTGGGGTCCTCTAGCTTTTAATCCAATGTAGCATGTACACTATGTTAGCTGAGTGTTGAATATTTCGATGCAAAGGGATGTTGTACATTTTACTTTTTACATCATATATGTTATTAATCTGAAGCATTTTAATTGTAAAATATTCAAATGTATTTTTCAAACGTACATGTTAATGTACAAGTAACATGTAAATTTTCATTTCTTCTTCTTCTTCTTAAAATTAAAAAAAAAACTTGCAAATGAACATATTCCTTGTGATTCGATCATGCGTTTGTATATGTGTGTGAATTTCTCGTTGTCTATAGTTTTTATGTTTCTACAGATTCTCCGACTTTTTCCTCTGATTTGCCTTACATATAGACTATGAAGTAAATTCTCTGTATCTCCCAAATTCGTCTGATTTTTACGTTTTTAGCTTGAGGATGTCTCCTGTATACTTTTAAACTCTCTTTATTTTAAATACTTATATAATAATTATTGGGGAAAAAAAGGTTACAATCGTTGGGAAGGTCTCTGAAAAAGCTGAAAGGAATACTGACATCACATTCGTTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGTATACTCTTCCTAAACCCTTCAACTAGATCTTCAATATCGTCGAGTATCTGCTCCATTTACTAAGCAACGTGTGTTGAAATTTATTCAGGGTAAACGATACATTTGATACTAAGCAAATGGATGACATACAGTAAGTTCTCGTGCTATTTAACTCTCTTATGATGACAAGTACTTTAGTGGTCTTTATGACACTCGCTTTGATTTTCTATGACATAGAGACGGAATGTACATACGGGTGAATGGGCATTTGAAAATATTTCAAGGCAACATGCAAATATTCGCATTTTCCGTAAGGTATGATATTTTATTTCTGTTCAATCTATTTTCGTTGTTTGGATACTCTTTTGAAGTTAAATGTTTGACATACAAGGCTGTCATCCTGCGGCGATTCTATTGCATGTTGAAAGTTTGAAACTCGAGGATTTTGGGGAAAATGCTAAGCACCTTTAGGGGAAAATGCTATATATGGTCTAATCCATAGTTATAATGAGCAGAAAATATAATGTACGGATTGCTATGTAGGATGGCCGGTCTTTCATTCTAATTCATTTGTCTTTCTGTTTGATTGTTATGGAGAGAAAGAACTTGTTATTGGTGCGAAGGAACTTAGAGCCTAAAACTGAAATTGGTAGTGCCGGCGCCAGTAGGCAAGTTTTATTCACATTTTACAAACAACTGAAGGTGGCATTTTATCCGTTTCTAATAATAGTGCTTGCAAATTTCAAAGTCCACATGTCTGAGTAACAGAGCTTATTTTCCAAGTGATTATATAAAAAATAGTTACCTTCAGTTCTAAGGTTGTTAGAACATTTTTGGGGATGTGCAAGTAGAAGAGGACTGTTAGGTGCTCTGAGAGTTAATTTTGGAATTCTCAAACCTTCATTTTATGGATTTAAGATTTCTTTAAAATGGCATTAGCATCTCACGTTGCCTTCTTTCATGAGATGTGACATTTGTTAGATGTGAGACATAGGTAGTGGCATCTATGTCTTCAAGTCAATTTTTATTAATACTCGGACTTTAACTAAAGTATTAGTGGCTAATTAATCGAATAAGTTCCGGGAGTATATAACCTTCATAATATTTAAATGATACCAATTGGGTATGGAATTTTGCAAATTTTCACTGGTGTTTATGTTAAGAGATGTTCTTTTCTTCCTTCAGATTTACAGTAATTGATTTCTTGTGATTGGGAAAGGATAGTACAAAGAAAGACATGCCTAATTTTGGACTTCGGCAATTATTAGAAATGCAAGTTGTTGCAATCTTTGGACTCATTGCAATTATCTTGTATGTGCCACGTAGTTTCTTCTTGTGATTGCCTAAAGGTTTTGCTTGAATCTACTATTCTATGAATTTGATTCTTTTCTCCAAGCTTGGTCCCTAGACAGTTATTGCATGCAGGTAGTGATCAACATCAAGTAATTATTGGGATAGCGGGAACCATCTAATTCCAATTTTTCGTTGCTGTGGTATATTTGACTGACTAACGGGATCATGAACTTGGGTTATGTTTTTCCAGGCCTGTCACAAATTGTGATGAAATTACCTTCCACTTTATTGAATGCATACATGACTACTTGCGGAATTCCAAGTTGCAGGTACTGATTGCTGGAGCTGATGTTGATGGTCGTGATTCTGACTTGTATTTTTATTTAATCAGTGAAATTAGTAATTCGTCAATATCATAATTGTCAACTCATTTGTGCTTAAACTGCTTGAAGCTCAATGGAGTTGCATCAACACAATCCCAATCCTCGGATTCAACTGTGAACGCCCTGGTGCAGAGTGGCTCGAGTGGATACCAGACAGCATCTTCAGAACTAGTAAGAGTCTTAAACCATGATTATAATTATGCTTCTATAACATATTCTTGATGATTATATAATTGGAATTCATATCTAATTTCTTTCTGCAGTCATCTGGGCAACACACTGTAGATGTTAAAAAGAATCCTGATGATTTGGTCCTTGATTATCTGCAGCTGCCCTCCAGCGTGTAAGTTGTCCCAGACCATATTTTATTTTCCCGTTTTGGATTGTTTTATTTGTTGGCTGGTTACTGTGCATTATCGTATATGAGATTGACTTGAGCTGCCTTTGGTCCGGAAACAGGGTGGTTTTAGGTGTAAATAATTGAATTCAGTGTTCTGATGTGAGTCTATTGTGGTACTTTTAAAACTGTCGTGAATAGAAAACAAGACGTGAGGTCGGTGGTTGACTTTTAGTCACAGGTCACTTCTTATTGGCCTTAGTATAATGACAAGGGGACAAGGGGACAAGTTAAAAAGGTACGGCTTTAGGGTTTTGGGTTCAATTTCATTCACATATTAAATCGTAGATTAAGTAGTTATCTTGATTCGATGTATATATTAACTTGTCCAAATACTTGCGTATTTGAAAAAAGAATATATTACCTTGGGATGGTTCTCCCTACTCTCCACCTGTAGTTGTTTTTGCCCTTTTGCACTCTTTTGATAGGGATGCATTCTCTATGTTTCTTATTAAAAAAAAAATATATATATATATATACACACACGTACGTATATGTATGTATGTGTATATATATATTCTTGACTTTGTTTTAGTTCCATATTATGGGGGTGACGATTCGAACTTCTAACATTTTGGTTGAGATATATGGTTTAATCAATTGAGTTTTAGCTAGGTTGGTCTTTCACTTTTGGTAGGTGTGTTATATTGGAAAAATAGACCGATTTGACTGAGCTGTTAGTTTGGACCATGAAATTTATTATATTTTATATTTTGAAACTGTTATTTTTTTCAGAGCAAAAGAAAAGGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCTTTGGAGAAAATACTGTACGCTCCCTCTCTAGTCTCTCTCCCCACTGCCCTTTCGCGGCTTCCTATGTGGTTAATATGGTAATTTAACTTGTACCATTTTGGGCTAAATTTTGTTTTTCAGGGACTCCATTAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATTGATGAGTTTCATTTCAAGTCTGCTGCATAGAATTGACAATTCTATAGGCTTTCTTTTCTTTATTTAATTTTACCATGCTCCATATGCTTTGAAATAGATCCATTTACTGCCTGACTTTCAACCTCAAAAAGTTCAACGTATATGTATTTTTAAGCTTGATTGTCTAATCTCCTAAATTTTATTACCTATTTCTGTGGGTGAAGTAGAAAGCGATAATTAATTCTTTTCCTGGTCGGTTTTGTCAAAAGGAGAAAATAAATAAATACTTTTACCGTTG

mRNA sequence

CATGAGCATCAATGGCGGGAAACAGAAAGCTTATACTTCACAAATCGATTCTCGAGAATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCCCAGGTCCCCGACTCCACTTCGGCGAAGAGTCGAGAATCGCCGGGTTTAGTTCCAGTAACTGTAAAACAGATAAGCGAAGCTTTCCATTCCGGCGAAGAGAAAGCCAACTTTGTAATCAATGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAAAAAGCTGAAAGGAATACTGACATCACATTCGTTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACATTTGATACTAAGCAAATGGATGACATACAAGACGGAATGTACATACGGGTGAATGGGCATTTGAAAATATTTCAAGGCAACATGCAAATATTCGCATTTTCCGTAAGGCCTGTCACAAATTGTGATGAAATTACCTTCCACTTTATTGAATGCATACATGACTACTTGCGGAATTCCAAGTTGCAGGTACTGATTGCTGGAGCTGATGTTGATGGTCTTGCATCAACACAATCCCAATCCTCGGATTCAACTGTGAACGCCCTGGTGCAGAGTGGCTCGAGTGGATACCAGACAGCATCTTCAGAACTATCATCTGGGCAACACACTGTAGATGTTAAAAAGAATCCTGATGATTTGGTCCTTGATTATCTGCAGCTGCCCTCCAGCGTAGCAAAAGAAAAGGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCTTTGGAGAAAATACTGGACTCCATTAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATTGATGAGTTTCATTTCAAGTCTGCTGCATAGAATTGACAATTCTATAGGCTTTCTTTTCTTTATTTAATTTTACCATGCTCCATATGCTTTGAAATAGATCCATTTACTGCCTGACTTTCAACCTCAAAAAGTTCAACGTATATGTATTTTTAAGCTTGATTGTCTAATCTCCTAAATTTTATTACCTATTTCTGTGGGTGAAGTAGAAAGCGATAATTAATTCTTTTCCTGGTCGGTTTTGTCAAAAGGAGAAAATAAATAAATACTTTTACCGTTG

Coding sequence (CDS)

ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCCCAGGTCCCCGACTCCACTTCGGCGAAGAGTCGAGAATCGCCGGGTTTAGTTCCAGTAACTGTAAAACAGATAAGCGAAGCTTTCCATTCCGGCGAAGAGAAAGCCAACTTTGTAATCAATGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAAAAAGCTGAAAGGAATACTGACATCACATTCGTTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACATTTGATACTAAGCAAATGGATGACATACAAGACGGAATGTACATACGGGTGAATGGGCATTTGAAAATATTTCAAGGCAACATGCAAATATTCGCATTTTCCGTAAGGCCTGTCACAAATTGTGATGAAATTACCTTCCACTTTATTGAATGCATACATGACTACTTGCGGAATTCCAAGTTGCAGGTACTGATTGCTGGAGCTGATGTTGATGGTCTTGCATCAACACAATCCCAATCCTCGGATTCAACTGTGAACGCCCTGGTGCAGAGTGGCTCGAGTGGATACCAGACAGCATCTTCAGAACTATCATCTGGGCAACACACTGTAGATGTTAAAAAGAATCCTGATGATTTGGTCCTTGATTATCTGCAGCTGCCCTCCAGCGTAGCAAAAGAAAAGGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCTTTGGAGAAAATACTGGACTCCATTAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATTGATGAGTTTCATTTCAAGTCTGCTGCATAG

Protein sequence

MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSSDSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA

Homology

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BLAST of MC11g0512.1 vs. ExPASy Swiss-Prot
Match: Q9ZQ19 (Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A PE=1 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 3.4e-67
Identity = 144/287 (50.17%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 1   MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEK 60
           MFSSSQF+     SG GF SSQ        S++AK+R+  GLVPVTVKQI+E F S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQ 120
           +  VING+ +TNV++VG V +K E + T++ F +DDGTGRI CKRWV++TFD ++M+ ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYIRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADV 180
           DG Y+R++GHLK FQG  Q+  FSVRP+ + +E+TFH+IECIH Y +NS+ Q    G DV
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVG-DV 180

Query: 181 DGLASTQSQSSDSTVNALVQSGSSGYQTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPS 240
                TQS      VN   Q GS+  Q    +  +SS  +  + +KN DD++LDYL+ P+
Sbjct: 181 -----TQS------VNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPA 240

Query: 241 SVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK 275
             A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Sbjct: 241 CTARQQGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of MC11g0512.1 vs. ExPASy Swiss-Prot
Match: Q8LFJ8 (Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.7e-45
Identity = 110/281 (39.15%), Postives = 167/281 (59.43%), Query Frame = 0


Query: 2   FSSSQFDSGSGFTSSQV-----PDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVIN 61
           F  +   +G GF  SQ        S+S K+R+   L+P+T+KQ+S A  +GE  +NF I+
Sbjct: 6   FDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSID 65

Query: 62  GVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRV 121
           GVDI  V IVG++S    R T + FVVDDGTG + C RW +   +T++M+ ++ GMY+R+
Sbjct: 66  GVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRL 125

Query: 122 NGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQ 181
           +GHLKIFQG   +  FSVRPVT+ +EI  HF EC++ ++ N+KL+    G+     A+ +
Sbjct: 126 HGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLR---GGSITQDTATPR 185

Query: 182 SQSSDSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIH 241
            Q   ST    + + +  YQT  S     Q   D        VL+YL  P  +  E G+H
Sbjct: 186 PQMPYST----MPTPAKPYQTGPSNQFPNQFN-DSMHGVKQTVLNYLNQPMHIVSEAGVH 245

Query: 242 RDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 278
            D ++++L+IPL ++ +++  L ++G IYST+DE  FKS A
Sbjct: 246 CDIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTA 276

[Close]

BLAST of MC11g0512.1 vs. ExPASy Swiss-Prot
Match: Q6K9U2 (Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2A PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-45
Identity = 119/291 (40.89%), Postives = 170/291 (58.42%), Query Frame = 0


Query: 1   MFSSSQFD--SGSGFTSSQ---VPDSTSAKSRESPGLVPVTVKQISEAFHS---GEEKAN 60
           M S SQ D  S S FTSSQ      +T +KSR +   +P+TVKQISEA  S   GE+ A 
Sbjct: 1   MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAP 60

Query: 61  FVINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGM 120
           FV++GV+  NV +VG VS K ERNTD++F +DDGTGR+   RWVND  D+ +   +Q+GM
Sbjct: 61  FVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGM 120

Query: 121 YIRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGL 180
           Y+ V G LK  Q   +  AF++RPVT+ +E+T HFI+C+  +L N+K Q+          
Sbjct: 121 YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQI---------- 180

Query: 181 ASTQSQSSDSTVNALVQSGSSGYQTASSELSSGQHTVDV-------KKNPDDLVLDYLQL 240
                 S   T +A+  S S+G+   ++  S   +   V       K + +  VL+  + 
Sbjct: 181 -----GSPAKTYSAMGSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFRE 240

Query: 241 PSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSA 277
           P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Sbjct: 241 PANVESEHGVHIDEIVKRFRLPEAKIKVAIDYLADIGHIYSTIDESHYKSA 276

[Close]

BLAST of MC11g0512.1 vs. ExPASy Swiss-Prot
Match: Q6H7J5 (Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2B PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.2e-41
Identity = 101/282 (35.82%), Postives = 162/282 (57.45%), Query Frame = 0


Query: 3   SSSQFDSGSGFTSSQVPDSTSA---------KSRESPGLVPVTVKQISEAFHSGEEKANF 62
           ++S    G GF  SQ  ++            KSR +  L+P+TVKQI +A  + ++K+NF
Sbjct: 20  NASSLFGGGGFMPSQATNAAEGTSGGGGGFPKSRNAQALLPLTVKQIMDASQTNDDKSNF 79

Query: 63  VINGVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMY 122
            +NG++++ V +VG++  K +R TD++F +DDGTGR+   RW ND+ DTK+M DIQ+G Y
Sbjct: 80  AVNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTKEMADIQNGDY 139

Query: 123 IRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLA 182
           + VNG LK FQG  Q+ A+SVR +TN +++T HF+ C+H +L  ++ +  +      G  
Sbjct: 140 VIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKSQVNANTATG-T 199

Query: 183 STQSQSSDSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEK 242
             Q+   DS     +    S     +S  S+ Q+T     N  DLVL+    P+ +  + 
Sbjct: 200 PNQTMPRDS-----MAYNQSPLTNQASTFSAPQNT-GTGTNMIDLVLNVFHDPAVMNDDH 259

Query: 243 GIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKS 276
           G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Sbjct: 260 GVGVDYVSRRLNLPEETVGKIIIDQVDLGHLYATIDDHHYKS 294

[Close]

BLAST of MC11g0512.1 vs. ExPASy Swiss-Prot
Match: Q5Z8L1 (Replication protein A 32 kDa subunit C OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2C PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-23
Identity = 60/160 (37.50%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 9   SGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHS-----GEEKANFVINGVDITNV 68
           S +G  ++  P  +  +     G VP TV  IS +F +     G     F I+GV+ TNV
Sbjct: 27  SAAGTGAAAAPSPSKPRDPRFSGCVPATVLHISRSFAAALAADGGGDPVFSIDGVETTNV 86

Query: 69  TIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIF 128
            ++G+V     R+TD+ F +DD TG+I   RW+ D  DT+    IQ+G+Y++V  +L  F
Sbjct: 87  RVLGRVVSVVSRDTDVCFTLDDSTGKIPLVRWITDQSDTRDTSYIQEGVYVKVQVNLMGF 146

Query: 129 QGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRN--SKLQ 162
           Q   Q  A S+RP+ N +E+  HFIEC+H +L +  SK+Q
Sbjct: 147 QAKKQGLARSIRPINNFNEVVLHFIECMHVHLESVQSKMQ 186

[Close]

BLAST of MC11g0512.1 vs. NCBI nr
Match: XP_022145139.1 (replication protein A 32 kDa subunit A [Momordica charantia])

HSP 1 Score: 515 bits (1327), Expect = 9.70e-184
Identity = 267/277 (96.39%), Postives = 270/277 (97.47%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ+       +G+ASTQSQSS
Sbjct: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQL-------NGVASTQSQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL
Sbjct: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 270

[Close]

BLAST of MC11g0512.1 vs. NCBI nr
Match: XP_022936562.1 (replication protein A 32 kDa subunit A-like [Cucurbita moschata])

HSP 1 Score: 457 bits (1176), Expect = 1.03e-160
Identity = 236/277 (85.20%), Postives = 254/277 (91.70%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ      +++G+ STQ QSS
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQ------NLNGVGSTQFQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS V   +Q+GSSGYQTASS L S QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDEL
Sbjct: 181 DSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of MC11g0512.1 vs. NCBI nr
Match: KAG7024504.1 (Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455 bits (1171), Expect = 5.95e-160
Identity = 235/277 (84.84%), Postives = 253/277 (91.34%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ      +++G+ STQ QSS
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQ------NLNGVGSTQFQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS V   +Q+GSSGYQTASS L S QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDEL
Sbjct: 181 DSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of MC11g0512.1 vs. NCBI nr
Match: KAG6591621.1 (Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 455 bits (1170), Expect = 8.44e-160
Identity = 234/277 (84.48%), Postives = 253/277 (91.34%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTYDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ      +++G+ STQ QSS
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQ------NLNGVGSTQFQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS V   +Q+GSSGYQTASS L S QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDEL
Sbjct: 181 DSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIP+EKIL+SIRSLEDEGLIYST+DEFHFKSAA
Sbjct: 241 SQQLKIPMEKILNSIRSLEDEGLIYSTVDEFHFKSAA 271

[Close]

BLAST of MC11g0512.1 vs. NCBI nr
Match: XP_023524340.1 (replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454 bits (1168), Expect = 1.70e-159
Identity = 238/277 (85.92%), Postives = 252/277 (90.97%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQ  DS+ +KSRE+PG+VPVTVKQISEA HSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMY+RV GHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYVRVIGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ        +G  STQ QSS
Sbjct: 121 KIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-------NGDVSTQFQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS+V   VQSGSSGYQTASS LSS QHTVDVKKN D+LVLDYLQLPSSVAKE+GIHRDEL
Sbjct: 181 DSSVKPAVQSGSSGYQTASSGLSSQQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIPLEKI+DSIRSLEDEGLIYSTIDE+HFKSAA
Sbjct: 241 SQQLKIPLEKIVDSIRSLEDEGLIYSTIDEYHFKSAA 270

[Close]

BLAST of MC11g0512.1 vs. ExPASy TrEMBL
Match: A0A6J1CUB8 (replication protein A 32 kDa subunit A OS=Momordica charantia OX=3673 GN=LOC111014622 PE=3 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 4.70e-184
Identity = 267/277 (96.39%), Postives = 270/277 (97.47%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQ+       +G+ASTQSQSS
Sbjct: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQL-------NGVASTQSQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL
Sbjct: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 270

[Close]

BLAST of MC11g0512.1 vs. ExPASy TrEMBL
Match: A0A6J1F8S8 (replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC111443128 PE=3 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 4.98e-161
Identity = 236/277 (85.20%), Postives = 254/277 (91.70%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANFVINGVDI
Sbjct: 1   MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ      +++G+ STQ QSS
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQ------NLNGVGSTQFQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS V   +Q+GSSGYQTASS L S QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDEL
Sbjct: 181 DSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of MC11g0512.1 vs. ExPASy TrEMBL
Match: A0A6J1IMU1 (replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC111476648 PE=3 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 1.71e-157
Identity = 234/279 (83.87%), Postives = 252/279 (90.32%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSSSQFDSGSGFT SQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANF INGVDI
Sbjct: 1   MFSSSQFDSGSGFTFSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFAINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTFDTKQMD+IQDGMYIRVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           KIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ      +++G+ STQ QSS
Sbjct: 121 KIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQ------NLNGVGSTQFQSS 180

Query: 181 DSTVNALVQSGSSGYQTASSE--LSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRD 240
           DS V   +Q+GSSGYQTASS   L S QHTVDVKKN DDL+LDYLQLPSSVAKE+GIHRD
Sbjct: 181 DSIVKTPMQNGSSGYQTASSVSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRD 240

Query: 241 ELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           ELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 ELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 273

[Close]

BLAST of MC11g0512.1 vs. ExPASy TrEMBL
Match: A0A1S3CR64 (replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503766 PE=3 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 7.52e-156
Identity = 231/277 (83.39%), Postives = 248/277 (89.53%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSS+QFDSGSGFTSSQ  DS+SAKSRESPGLVPVTVKQISEA HSGEEKANFVIN VDI
Sbjct: 1   MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDTKQM++IQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           K+FQ N QIFAFSVRPVTN DEITFHF+ECIHD+LRNSKLQ      ++ G  STQ Q+S
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ------NLKGDGSTQLQTS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS V   VQ+GSSGY T SS + S QHTVDVKK+ D+LVLDYLQLPSSVAKE+GIHRDEL
Sbjct: 181 DSIVKTPVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLKIP+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of MC11g0512.1 vs. ExPASy TrEMBL
Match: A0A0A0LEG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1)

HSP 1 Score: 440 bits (1132), Expect = 2.51e-154
Identity = 227/277 (81.95%), Postives = 247/277 (89.17%), Query Frame = 0


Query: 1   MFSSSQFDSGSGFTSSQVPDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDI 60
           MFSS+QFDS SGFTSSQ  DS+SAKSRESPGL+PVTVKQISEA HSGEEKANFVINGVDI
Sbjct: 1   MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLIPVTVKQISEASHSGEEKANFVINGVDI 60

Query: 61  TNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHL 120
           TNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTFDT QM++IQDGMY+RVNGHL
Sbjct: 61  TNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMEEIQDGMYVRVNGHL 120

Query: 121 KIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSS 180
           K+FQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ      ++ G  STQ Q+S
Sbjct: 121 KMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------NLKGNGSTQLQTS 180

Query: 181 DSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDEL 240
           DS V   VQ+GS+GY T SS + S QHTVDVKK+ D+LVLDYLQLPSSVAKE+GIH+DEL
Sbjct: 181 DSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDEL 240

Query: 241 SQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 277
           SQQLK+P+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Sbjct: 241 SQQLKLPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA 271

[Close]

BLAST of MC11g0512.1 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-68
Identity = 144/287 (50.17%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 1   MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEK 60
           MFSSSQF+     SG GF SSQ        S++AK+R+  GLVPVTVKQI+E F S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQ 120
           +  VING+ +TNV++VG V +K E + T++ F +DDGTGRI CKRWV++TFD ++M+ ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYIRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADV 180
           DG Y+R++GHLK FQG  Q+  FSVRP+ + +E+TFH+IECIH Y +NS+ Q    G DV
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVG-DV 180

Query: 181 DGLASTQSQSSDSTVNALVQSGSSGYQTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPS 240
                TQS      VN   Q GS+  Q    +  +SS  +  + +KN DD++LDYL+ P+
Sbjct: 181 -----TQS------VNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPA 240

Query: 241 SVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK 275
             A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Sbjct: 241 CTARQQGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of MC11g0512.1 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-68
Identity = 144/287 (50.17%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 1   MFSSSQFD-----SGSGFTSSQ-----VPDSTSAKSRESPGLVPVTVKQISEAFHSGEEK 60
           MFSSSQF+     SG GF SSQ        S++AK+R+  GLVPVTVKQI+E F S  EK
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  ANFVINGVDITNVTIVGKVSEKAE-RNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQ 120
           +  VING+ +TNV++VG V +K E + T++ F +DDGTGRI CKRWV++TFD ++M+ ++
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYIRVNGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADV 180
           DG Y+R++GHLK FQG  Q+  FSVRP+ + +E+TFH+IECIH Y +NS+ Q    G DV
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVG-DV 180

Query: 181 DGLASTQSQSSDSTVNALVQSGSSGYQTA--SSELSSGQHTVDVKKNPDDLVLDYLQLPS 240
                TQS      VN   Q GS+  Q    +  +SS  +  + +KN DD++LDYL+ P+
Sbjct: 181 -----TQS------VNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPA 240

Query: 241 SVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFK 275
             A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Sbjct: 241 CTARQQGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of MC11g0512.1 vs. TAIR 10
Match: AT3G02920.1 (Replication protein A, subunit RPA32 )

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-46
Identity = 110/281 (39.15%), Postives = 167/281 (59.43%), Query Frame = 0


Query: 2   FSSSQFDSGSGFTSSQV-----PDSTSAKSRESPGLVPVTVKQISEAFHSGEEKANFVIN 61
           F  +   +G GF  SQ        S+S K+R+   L+P+T+KQ+S A  +GE  +NF I+
Sbjct: 6   FDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSID 65

Query: 62  GVDITNVTIVGKVSEKAERNTDITFVVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRV 121
           GVDI  V IVG++S    R T + FVVDDGTG + C RW +   +T++M+ ++ GMY+R+
Sbjct: 66  GVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRL 125

Query: 122 NGHLKIFQGNMQIFAFSVRPVTNCDEITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQ 181
           +GHLKIFQG   +  FSVRPVT+ +EI  HF EC++ ++ N+KL+    G+     A+ +
Sbjct: 126 HGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLR---GGSITQDTATPR 185

Query: 182 SQSSDSTVNALVQSGSSGYQTASSELSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIH 241
            Q   ST    + + +  YQT  S     Q   D        VL+YL  P  +  E G+H
Sbjct: 186 PQMPYST----MPTPAKPYQTGPSNQFPNQFN-DSMHGVKQTVLNYLNQPMHIVSEAGVH 245

Query: 242 RDELSQQLKIPLEKILDSIRSLEDEGLIYSTIDEFHFKSAA 278
            D ++++L+IPL ++ +++  L ++G IYST+DE  FKS A
Sbjct: 246 CDIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTA 276

[Close]

BLAST of MC11g0512.1 vs. TAIR 10
Match: AT3G02920.2 (Replication protein A, subunit RPA32 )

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-45
Identity = 102/256 (39.84%), Postives = 158/256 (61.72%), Query Frame = 0


Query: 22  TSAKSRESPGLVPVTVKQISEAFHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF 81
           +S ++R+   L+P+T+KQ+S A  +GE  +NF I+GVDI  V IVG++S    R T + F
Sbjct: 51  SSIRNRDVRTLLPLTLKQLSSASTTGE--SNFSIDGVDIKTVVIVGRISRMENRITQVDF 110

Query: 82  VVDDGTGRIGCKRWVNDTFDTKQMDDIQDGMYIRVNGHLKIFQGNMQIFAFSVRPVTNCD 141
           VVDDGTG + C RW +   +T++M+ ++ GMY+R++GHLKIFQG   +  FSVRPVT+ +
Sbjct: 111 VVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFN 170

Query: 142 EITFHFIECIHDYLRNSKLQVLIAGADVDGLASTQSQSSDSTVNALVQSGSSGYQTASSE 201
           EI  HF EC++ ++ N+KL+    G+     A+ + Q   ST    + + +  YQT  S 
Sbjct: 171 EIVHHFTECMYVHMYNTKLR---GGSITQDTATPRPQMPYST----MPTPAKPYQTGPSN 230

Query: 202 LSSGQHTVDVKKNPDDLVLDYLQLPSSVAKEKGIHRDELSQQLKIPLEKILDSIRSLEDE 261
               Q   D        VL+YL  P  +  E G+H D ++++L+IPL ++ +++  L ++
Sbjct: 231 QFPNQFN-DSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSND 290

Query: 262 GLIYSTIDEFHFKSAA 278
           G IYST+DE  FKS A
Sbjct: 291 GCIYSTLDETCFKSTA 296

The following BLAST results are available for this feature:

BLAST of MC11g0512.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQ19	3.4e-67	50.17	Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A ...	[more]
Q8LFJ8	4.7e-45	39.15	Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B ...	[more]
Q6K9U2	6.2e-45	40.89	Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q6H7J5	3.2e-41	35.82	Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5Z8L1	1.8e-23	37.50	Replication protein A 32 kDa subunit C OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of MC11g0512.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145139.1	9.70e-184	96.39	replication protein A 32 kDa subunit A [Momordica charantia]	[more]
XP_022936562.1	1.03e-160	85.20	replication protein A 32 kDa subunit A-like [Cucurbita moschata]	[more]
KAG7024504.1	5.95e-160	84.84	Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6591621.1	8.44e-160	84.48	Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023524340.1	1.70e-159	85.92	replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC11g0512.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUB8	4.70e-184	96.39	replication protein A 32 kDa subunit A OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1F8S8	4.98e-161	85.20	replication protein A 32 kDa subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IMU1	1.71e-157	83.87	replication protein A 32 kDa subunit A-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3CR64	7.52e-156	83.39	replication protein A 32 kDa subunit A-like OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A0A0LEG7	2.51e-154	81.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881710 PE=3 SV=1	[more]

BLAST of MC11g0512.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24490.1	2.4e-68	50.17	replicon protein A2	[more]
AT2G24490.2	2.4e-68	50.17	replicon protein A2	[more]
AT3G02920.1	3.4e-46	39.15	Replication protein A, subunit RPA32	[more]
AT3G02920.2	1.7e-45	39.84	Replication protein A, subunit RPA32	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 63..136 e-value: 1.7E-10 score: 40.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 212..277 e-value: 1.2E-15 score: 59.0
IPR014646	Replication factor A protein 2	PIRSF	PIRSF036949	RPA32	coord: 1..277 e-value: 9.3E-71 score: 236.0
IPR014892	Replication protein A, C-terminal	PFAM	PF08784	RPA_C	coord: 176..270 e-value: 1.3E-13 score: 51.5
None	No IPR available	GENE3D	2.40.50.140		coord: 29..160 e-value: 8.0E-40 score: 137.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR13989:SF34	REPLICATION PROTEIN A 32 KDA SUBUNIT A	coord: 1..276
None	No IPR available	CDD	cd04478	RPA2_DBD_D	coord: 62..155 e-value: 2.56346E-39 score: 130.797
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 1..276
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 213..275
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 32..158

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0512	MC11g0512	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0512.1-utr3	MC11g0512.1-utr3-MC11:3963009..3963255	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3963256..3963334	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3963441..3963509	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3964299..3964378	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3964471..3964562	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3964665..3964774	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3966003..3966080	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3966167..3966208	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3966299..3966396	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3967230..3967340	CDS
MC11g0512.1-cds	MC11g0512.1-cds-MC11:3967735..3967809	CDS

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0512.1-utr5	MC11g0512.1-utr5-MC11:3967810..3967820	utr5
MC11g0512.1-utr5	MC11g0512.1-utr5-MC11:3967893..3967938	utr5

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0512.1	MC11g0512.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0035861	site of double-strand break
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003697	single-stranded DNA binding