MC11g0470.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0470.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	transcription factor HY5
Location	MC11: 3656252 .. 3659625 (-)
Sequence length	928
RNA-Seq Expression	MC11g0470.1
Synteny	MC11g0470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTTTAGTTTTCCTTTTCTTTTTAAGCAACGTCTTTGTCTCGTTTTTCTATCGCATCAATTTTTTCGGTGTTGATTATTCGCCGGCGCAATGCAGGAACGATCCGCCGCCGCCGCCGCCAATCCGATTGCTGCTGGTCGTCTGCGCTCGAGCAGCGAGCGATCATCGAGCTCTGCCTTCCAACTTGAACGTGAAATTAAAGAAGGTTCGATTCCCTTTCGTTTTCTTTACGATCTCTCGTGTTCAATATTTCTTTTGAAAACATTGTACGAAGCGTTATCGGATATCGTTAGCAGTAATTTTTTTTGTTCTGTTCTTCTGATTGATCGGAGAAGAGTTTCGTTTTGGAAAACTTTATCGTCCTTCTTCTCTGGAGATATTGCAACGACTCTGTATCGGATTCTGAACTCCTTCCAGTTTGACAGTTTCTCCTTTAGGATTATCCTTCTTGGTTCAAGCTTCTGAAGTTTTGTTGTAGTAGGACCGTATAATGCTACTCTTAGCTCTCTCTCTCTCTCTCTCTCTCAGTTTCTTAAATTTCCGGGAATCGCATCTCGATTTGTGTATTTGAGGCAGAATTACGTTTTGATTTATTTTTTTATGCGAAGATATAGGAGTAGACAGCGATGAGGAGGAGATCAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCCGCCGGCGGCACTTCAGCGTCTGGTAAAGCCCGGGCCCAATCCGCTGGATCAGACGGCCCTAGGAGTAGGGGACGAAGCGCCGCTGACAAAGAAAGCAAAAGGCTTAAGAGGTAAGGCTAGAATGGGGACCAAAGTATCGTACGCCTAATTGCCGTTTTGTTCAGCCGTATCGTATGTGTGGAGGGAGTGCTGCATGTCATTTTTGTGACACGTTTCATCTCTCTCTCTTTAAGATTGTTAAGAAACAGAGTTTCAGCCCAGCAAGCAAGGGAGAGGAAAAAGGCGTATCTAAATGAATTGGAAATTAGAGCAACGAACTTGGAGAAAAGGAACTCCGAGCTTGAAGAAAAGCTGTCCACGTTACAGAATGAAAATCAGATGCTTAGACAAGTACGTCAACCCCCATTTCTTTACCCTTTTTTTTTGCTCTTTTATGCACATGATCATAACGTCTTCAAACCCATCACATTGATATTATTGTCATTTATGTAATCTGATTAGCTTCATACTTACTCATTTTCCTTAAGTGGGAAACCATCTATCCTTAGCCATGAAGTGTCAAATCTTTAATCTCCTAAGCATATACTATTGGACGATGACATTTATTAGATAAATTATTGCTGGGCAGTTGGCCTATCCTTTAGACTTCCCCTCTCTCTTCCATTTATGAATGGTTTATTGTTTAGCGCACATTGAAATGCTTAATTTCAATTTTATATTAGTGTTTCATTCTTATTATTTATTTTTTCGATACTAAGTTCGAAATACACAATTTTTTAATTGAAAATACATGTCTTAATCAATTGAGTTAGGATTAATTGAATTATATTAGTGTTTCGTTACTTCAATATTTAGTATTAGAAATAGTAATAAGATGCGATTTTTTTAACCACTAGAATATAATTCAATTGGTGAAGATACTAAATATTTTCATGGTAAAGAACCAGGCTCAATGAATCAAGGAAAAAAGATGGAATGGAAAGTAACTAGCTATCTTGTATTTTTTTTTCCTAATATTCGTGAGTGTCCGGATCAGCTCGCGCACAGTTGAACTAATCTCAAGAGACTATCGTCTGATCCTATTACATTTGATTGTCTAAGTAACTCATAGGATATTAAATCTTAAGTAGGTGGTCACCGTAGTCTGAACTCATTCTCTCTAAGCCTTTACTATTTATATTGGCCCTTATCGATCACTCGACCATATCATGATGGTTAACTAACCACCTTTTAGTATTGAACCTTAAAAAATCCCCAAGAAAAGTAGGCTCACAAACAATAAATCCTAACTAAAAATAATGGGATGGATTAGAAAATGTTATTAGCTAAACAATACATATGGATATATTATTTTAAAGAGAACCATCGAAGGAGGGTTTTAAACAATCATCGTAGTTTATAAACAAAACATAGAATATGTTTGTTTGTGGTCTCCTTGTGGAAAATACTCACTTACACGGTTACACTATAAGAGTTCTTTGACATATATATTATTATTTTCTAATTCAACAACATGTGGAGACACAAATTTAAACCTTTAATTTTATATATTTATTAGCTAACAAATTTTAAAATAATTTACTTCTTTTCTTTGAGTACAACTAGATTCACTTAATTAACTATGAGGAAATTATAGACCCATTAACCGATGTTATATATAGCCTGTAGGAGCTCCTATTAATAGGTGGGTAGGCAAATATTGTTCGTGGTGATTTATTTGATACTTGGTAGGTTGGTAGGGACCATGCACAAACAATAAATGTCAATTGCTTTGCTTATTGTTTCCGTTTTAATTATGATGAAATGTCAATTGCTTTGCTATATATTGTTTCCATTTTCCATTTGAGTTGTGAGGAATGGAGAATATAGATAATCATCTCCTAGTCCACAAAAATTTATTTATAGACTACGTTTTGCTCTCAAGGTCTTTTCTATATCTATACATGGAAGACTTTTCTATTGCTTAAGATGTTTCTATTTTCGCTCTCCTTGCAATTGTTTCTAGCTCCATCATATATTGCAAGCTTGTCTGGATATGAAAGTTTCCTTATTTTATTCACTCACTTTTAACTTTCGAGGATTCCATCTACACAGTGTAAGAATGATATAGTTCATACATAGTATTTACGTTACGATAATATCTACTCGCTTAAATGTTATCATAATTTCTATTACGCTTTTAGTTGCACTCTTAAAATGTTCTTACGATGATCCATTTAGTCATACTTGTGTATTCTTATCCACAATTCTAATCTTTACTCTTGATAGAATTTCATCGTTATGTTACTTTGCGTGATCATACAGATACTAAAGAATACGACGACCAATAAGAGAAGTGACGGTGATGCTGCCAATGCCAATGAATCTATATAGTTGAAATTTGTAGCATGTACAAGATAACATTTAATAGCTAGAAGGGAATGAAAAAATCAAAGTAGTAAATAACGTTATCAACTAGAAAGGGATGAAAAGTTTAAAATAGTGTTTATTTGGATAAATTATTTAACATGACTGACACAATAGTTGATAATTTTATAATTGTTGGATGTATGATAGAGAAAGTGAAAAATGCTTTTTATCACGCATTTAATGGTTAAAAAAAGAAATATTAAATATAATTGTGAAAGTTGGATTCTTATATATTTAAAGAAATAAAAAAAAGAAGTTGGAAGACTATGAATTAGCATATATGTGGT

mRNA sequence

TCTTTTTTAGTTTTCCTTTTCTTTTTAAGCAACGTCTTTGTCTCGTTTTTCTATCGCATCAATTTTTTCGGTGTTGATTATTCGCCGGCGCAATGCAGGAACGATCCGCCGCCGCCGCCGCCAATCCGATTGCTGCTGGTCGTCTGCGCTCGAGCAGCGAGCGATCATCGAGCTCTGCCTTCCAACTTGAACGTGAAATTAAAGAAGGAGTAGACAGCGATGAGGAGGAGATCAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCCGCCGGCGGCACTTCAGCGTCTGGTAAAGCCCGGGCCCAATCCGCTGGATCAGACGGCCCTAGGAGTAGGGGACGAAGCGCCGCTGACAAAGAAAGCAAAAGGCTTAAGAGATTGTTAAGAAACAGAGTTTCAGCCCAGCAAGCAAGGGAGAGGAAAAAGGCGTATCTAAATGAATTGGAAATTAGAGCAACGAACTTGGAGAAAAGGAACTCCGAGCTTGAAGAAAAGCTGTCCACGTTACAGAATGAAAATCAGATGCTTAGACAAATACTAAAGAATACGACGACCAATAAGAGAAGTGACGGTGATGCTGCCAATGCCAATGAATCTATATAGTTGAAATTTGTAGCATGTACAAGATAACATTTAATAGCTAGAAGGGAATGAAAAAATCAAAGTAGTAAATAACGTTATCAACTAGAAAGGGATGAAAAGTTTAAAATAGTGTTTATTTGGATAAATTATTTAACATGACTGACACAATAGTTGATAATTTTATAATTGTTGGATGTATGATAGAGAAAGTGAAAAATGCTTTTTATCACGCATTTAATGGTTAAAAAAAGAAATATTAAATATAATTGTGAAAGTTGGATTCTTATATATTTAAAGAAATAAAAAAAAGAAGTTGGAAGACTATGAATTAGCATATATGTGGT

Coding sequence (CDS)

ATGCAGGAACGATCCGCCGCCGCCGCCGCCAATCCGATTGCTGCTGGTCGTCTGCGCTCGAGCAGCGAGCGATCATCGAGCTCTGCCTTCCAACTTGAACGTGAAATTAAAGAAGGAGTAGACAGCGATGAGGAGGAGATCAGCAGAGTGCCGCAGATCTGCGGCAACTCTGCCTCCGCCGGCGGCACTTCAGCGTCTGGTAAAGCCCGGGCCCAATCCGCTGGATCAGACGGCCCTAGGAGTAGGGGACGAAGCGCCGCTGACAAAGAAAGCAAAAGGCTTAAGAGATTGTTAAGAAACAGAGTTTCAGCCCAGCAAGCAAGGGAGAGGAAAAAGGCGTATCTAAATGAATTGGAAATTAGAGCAACGAACTTGGAGAAAAGGAACTCCGAGCTTGAAGAAAAGCTGTCCACGTTACAGAATGAAAATCAGATGCTTAGACAAATACTAAAGAATACGACGACCAATAAGAGAAGTGACGGTGATGCTGCCAATGCCAATGAATCTATATAG

Protein sequence

MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI

Homology

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BLAST of MC11g0470.1 vs. ExPASy Swiss-Prot
Match: O24646 (Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 105/175 (60.00%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICG----- 60
           MQE+    A + +AA  L SSSERSSSSA  L  EIKEG++SD EEI RVP+  G     
Sbjct: 1   MQEQ----ATSSLAASSLPSSSERSSSSAPHL--EIKEGIESD-EEIRRVPEFGGEAVGK 60

Query: 61  NSASAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYL 120
            ++     SA+G+ R Q+   +  R RGR+ A+KE+KRLKRLLRNRVSAQQARERKKAYL
Sbjct: 61  ETSGRESGSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYL 120

Query: 121 NELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 171
           +ELE R  +LE +NSELEE+LSTLQNENQMLR ILKNTT NKR  G  +NA+ S+
Sbjct: 121 SELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNKRGGGGGSNADASL 168

[Close]

BLAST of MC11g0470.1 vs. ExPASy Swiss-Prot
Match: Q9SM50 (Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-31
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQE+    A + IAA  L SSSERSSSSA  L  E+KEG++SD +EI RVP++ G   + 
Sbjct: 1   MQEQ----ATSSIAASSLPSSSERSSSSA--LHHELKEGMESD-DEIRRVPEMGGE--AT 60

Query: 61  GGTSASGKARAQSAGSDGP-----RSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYL 120
           G TSASG+    +AG   P     R RGRS ADKE+KRLKRLLRNRVSAQQARERKKAYL
Sbjct: 61  GTTSASGRDGVSAAGQAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYL 120

Query: 121 NELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTT 155
            +LE R   LE +N+ELEE+LSTLQNENQMLR ILKNTT
Sbjct: 121 IDLEARVKELETKNAELEERLSTLQNENQMLRHILKNTT 150

[Close]

BLAST of MC11g0470.1 vs. ExPASy Swiss-Prot
Match: Q8W191 (Transcription factor HY5-like OS=Arabidopsis thaliana OX=3702 GN=HYH PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-15
Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 19  RSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQI------CGNSASA-GGTSASGKARA 78
           R +   SSSS+ +     K   +  +EE+  VP +      C  S+SA  G +     + 
Sbjct: 5   RPNGNSSSSSSHK-----KHKTEESDEELLMVPDMEAAGSTCVLSSSADDGVNNPELDQT 64

Query: 79  QSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELEIRATNLEKRNSE 138
           Q+  S   R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+++LE RA  L+  N +
Sbjct: 65  QNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQ 124

Query: 139 LEEKLSTLQNENQMLRQILKNT 154
           LEEK+STL NEN MLR++L NT
Sbjct: 125 LEEKISTLTNENTMLRKMLINT 141

[Close]

BLAST of MC11g0470.1 vs. ExPASy Swiss-Prot
Match: A2VD01 (Cyclic AMP-responsive element-binding protein 3-like protein 2 OS=Xenopus laevis OX=8355 GN=creb3l2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-04
Identity = 26/66 (39.39%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 86  AADKESKRLKRLLRNRVSAQQARERKKAYLNELEIRATNLEKRNSELEEKLSTLQNENQM 145
           A +K  K+++R ++N++SAQ++R +KK Y++ LE R  N    NSEL +K+  L++ N+ 
Sbjct: 295 AEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKRVENSSSENSELRKKVEVLESTNRT 354

Query: 146 LRQILK 152
           L Q L+
Sbjct: 355 LLQQLQ 360

[Close]

BLAST of MC11g0470.1 vs. ExPASy Swiss-Prot
Match: Q1XGE2 (Transcriptional activator hacA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=hacA PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-04
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 79  PRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELEIRATNLEKRNSELEEKLST 138
           PR R ++  +KE +R++R+LRNR +AQ +RERK+  + +LE     +E++N  L ++LS 
Sbjct: 72  PRKRAKTEDEKEQRRIERVLRNRAAAQTSRERKRLEMEKLENEKIQMEQQNQFLLQRLSQ 131

Query: 139 LQNENQMLRQILKNTTTNKRSDGDAAN 166
           ++ EN  L Q L       R  G  AN
Sbjct: 132 MEAENNRLSQQLAQLAAEVR--GSRAN 156

[Close]

BLAST of MC11g0470.1 vs. NCBI nr
Match: XP_022142438.1 (transcription factor HY5-like isoform X1 [Momordica charantia])

HSP 1 Score: 282 bits (722), Expect = 6.39e-95
Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE--GVDSDEEEISRVPQICGNSA 60
           MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE  GVDSDEEEISRVPQICGNSA
Sbjct: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEDIGVDSDEEEISRVPQICGNSA 60

Query: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL 120
           SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL
Sbjct: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL 120

Query: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI
Sbjct: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 172

[Close]

BLAST of MC11g0470.1 vs. NCBI nr
Match: XP_022142521.1 (transcription factor HY5-like isoform X2 [Momordica charantia])

HSP 1 Score: 268 bits (684), Expect = 3.33e-89
Identity = 165/172 (95.93%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE--GVDSDEEEISRVPQICGNSA 60
           MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE  GVDSDEEEISRVPQICGNSA
Sbjct: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEDIGVDSDEEEISRVPQICGNSA 60

Query: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL 120
           SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKR     VSAQQARERKKAYLNEL
Sbjct: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKR-----VSAQQARERKKAYLNEL 120

Query: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI
Sbjct: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 167

[Close]

BLAST of MC11g0470.1 vs. NCBI nr
Match: XP_022940420.1 (transcription factor HY5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 212 bits (540), Expect = 2.30e-67
Identity = 139/171 (81.29%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQER+ AAA+    AGR RSSSERSSSSAF L+  +KEGV SDEEEISRVPQICGNSASA
Sbjct: 1   MQERTTAAAS----AGRTRSSSERSSSSAFLLD--VKEGVGSDEEEISRVPQICGNSASA 60

Query: 61  -GGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELE 120
            GGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +LE
Sbjct: 61  AGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLE 120

Query: 121 IRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           IRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 IRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

[Close]

BLAST of MC11g0470.1 vs. NCBI nr
Match: XP_023524406.1 (transcription factor HY5-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210 bits (535), Expect = 1.33e-66
Identity = 138/171 (80.70%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQER+AA A+    AGR RSSSERSSSSAF L+  +KEGV SDEEE SRVPQICGNSASA
Sbjct: 1   MQERTAAVAS----AGRTRSSSERSSSSAFLLD--VKEGVGSDEEETSRVPQICGNSASA 60

Query: 61  -GGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELE 120
            GGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +LE
Sbjct: 61  AGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLE 120

Query: 121 IRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           IRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 IRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQAV 161

[Close]

BLAST of MC11g0470.1 vs. NCBI nr
Match: XP_022981221.1 (transcription factor HY5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 208 bits (530), Expect = 7.64e-66
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQER+ A A+    A R RSSSERSSSSAF L+  +KEGV SDEEEISRVPQICGNSASA
Sbjct: 1   MQERTTAVAS----ASRTRSSSERSSSSAFLLD--VKEGVGSDEEEISRVPQICGNSASA 60

Query: 61  -GGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELE 120
            GGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +LE
Sbjct: 61  AGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLE 120

Query: 121 IRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           IRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 IRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

[Close]

BLAST of MC11g0470.1 vs. ExPASy TrEMBL
Match: A0A6J1CN91 (transcription factor HY5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012541 PE=3 SV=1)

HSP 1 Score: 282 bits (722), Expect = 3.10e-95
Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE--GVDSDEEEISRVPQICGNSA 60
           MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE  GVDSDEEEISRVPQICGNSA
Sbjct: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEDIGVDSDEEEISRVPQICGNSA 60

Query: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL 120
           SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL
Sbjct: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL 120

Query: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI
Sbjct: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 172

[Close]

BLAST of MC11g0470.1 vs. ExPASy TrEMBL
Match: A0A6J1CMF5 (transcription factor HY5-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012541 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 1.61e-89
Identity = 165/172 (95.93%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE--GVDSDEEEISRVPQICGNSA 60
           MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKE  GVDSDEEEISRVPQICGNSA
Sbjct: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEDIGVDSDEEEISRVPQICGNSA 60

Query: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNEL 120
           SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKR     VSAQQARERKKAYLNEL
Sbjct: 61  SAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKR-----VSAQQARERKKAYLNEL 120

Query: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI
Sbjct: 121 EIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 167

[Close]

BLAST of MC11g0470.1 vs. ExPASy TrEMBL
Match: A0A6J1FQI7 (transcription factor HY5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446032 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.11e-67
Identity = 139/171 (81.29%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQER+ AAA+    AGR RSSSERSSSSAF L+  +KEGV SDEEEISRVPQICGNSASA
Sbjct: 1   MQERTTAAAS----AGRTRSSSERSSSSAFLLD--VKEGVGSDEEEISRVPQICGNSASA 60

Query: 61  -GGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELE 120
            GGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +LE
Sbjct: 61  AGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLE 120

Query: 121 IRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           IRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 IRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

[Close]

BLAST of MC11g0470.1 vs. ExPASy TrEMBL
Match: A0A6J1IVY4 (transcription factor HY5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480422 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 3.70e-66
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQER+ A A+    A R RSSSERSSSSAF L+  +KEGV SDEEEISRVPQICGNSASA
Sbjct: 1   MQERTTAVAS----ASRTRSSSERSSSSAFLLD--VKEGVGSDEEEISRVPQICGNSASA 60

Query: 61  -GGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELE 120
            GGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +LE
Sbjct: 61  AGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLE 120

Query: 121 IRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           IRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 IRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 161

[Close]

BLAST of MC11g0470.1 vs. ExPASy TrEMBL
Match: A0A6J1FK24 (transcription factor HY5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446032 PE=3 SV=1)

HSP 1 Score: 208 bits (530), Expect = 3.95e-66
Identity = 137/171 (80.12%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICGNSASA 60
           MQER+ AAA+    AGR RSSSERSSSSAF L+ +   GV SDEEEISRVPQICGNSASA
Sbjct: 1   MQERTTAAAS----AGRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASA 60

Query: 61  -GGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELE 120
            GGTSASGKA A    SDG RSRGRS+ADKESKRLKRLLRNRVSAQQARERKKAYL +LE
Sbjct: 61  AGGTSASGKAPA----SDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLE 120

Query: 121 IRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 170
           IRA NL KRNSELEE LSTLQNENQMLR ILKNTTTNKRSDGD ANAN+++
Sbjct: 121 IRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163

[Close]

BLAST of MC11g0470.1 vs. TAIR 10
Match: AT5G11260.1 (Basic-leucine zipper (bZIP) transcription factor family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-35
Identity = 105/175 (60.00%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MQERSAAAAANPIAAGRLRSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQICG----- 60
           MQE+    A + +AA  L SSSERSSSSA  L  EIKEG++SD EEI RVP+  G     
Sbjct: 1   MQEQ----ATSSLAASSLPSSSERSSSSAPHL--EIKEGIESD-EEIRRVPEFGGEAVGK 60

Query: 61  NSASAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYL 120
            ++     SA+G+ R Q+   +  R RGR+ A+KE+KRLKRLLRNRVSAQQARERKKAYL
Sbjct: 61  ETSGRESGSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYL 120

Query: 121 NELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNTTTNKRSDGDAANANESI 171
           +ELE R  +LE +NSELEE+LSTLQNENQMLR ILKNTT NKR  G  +NA+ S+
Sbjct: 121 SELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNKRGGGGGSNADASL 168

[Close]

BLAST of MC11g0470.1 vs. TAIR 10
Match: AT3G17609.2 (HY5-homolog )

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-16
Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 19  RSSSERSSSSAFQLEREIKEGVDSDEEEISRVPQI------CGNSASA-GGTSASGKARA 78
           R +   SSSS+ +     K   +  +EE+  VP +      C  S+SA  G +     + 
Sbjct: 5   RPNGNSSSSSSHK-----KHKTEESDEELLMVPDMEAAGSTCVLSSSADDGVNNPELDQT 64

Query: 79  QSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYLNELEIRATNLEKRNSE 138
           Q+  S   R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+++LE RA  L+  N +
Sbjct: 65  QNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQ 124

Query: 139 LEEKLSTLQNENQMLRQILKNT 154
           LEEK+STL NEN MLR++L NT
Sbjct: 125 LEEKISTLTNENTMLRKMLINT 141

[Close]

BLAST of MC11g0470.1 vs. TAIR 10
Match: AT3G17609.1 (HY5-homolog )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 56  NSASAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYL 115
           +S++  G +     + Q+  S   R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+
Sbjct: 30  SSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYV 89

Query: 116 NELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNT 154
           ++LE RA  L+  N +LEEK+STL NEN MLR++L NT
Sbjct: 90  SDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 127

[Close]

BLAST of MC11g0470.1 vs. TAIR 10
Match: AT3G17609.3 (HY5-homolog )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 56  NSASAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYL 115
           +S++  G +     + Q+  S   R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+
Sbjct: 15  SSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYV 74

Query: 116 NELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNT 154
           ++LE RA  L+  N +LEEK+STL NEN MLR++L NT
Sbjct: 75  SDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 112

[Close]

BLAST of MC11g0470.1 vs. TAIR 10
Match: AT3G17609.4 (HY5-homolog )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 56  NSASAGGTSASGKARAQSAGSDGPRSRGRSAADKESKRLKRLLRNRVSAQQARERKKAYL 115
           +S++  G +     + Q+  S   R RGR+  DKE + LKRLLRNRVSAQQARERKK Y+
Sbjct: 29  SSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSLKRLLRNRVSAQQARERKKVYV 88

Query: 116 NELEIRATNLEKRNSELEEKLSTLQNENQMLRQILKNT 154
           ++LE RA  L+  N +LEEK+STL NEN MLR++L NT
Sbjct: 89  SDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 126

The following BLAST results are available for this feature:

BLAST of MC11g0470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24646	1.8e-34	60.00	Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1	[more]
Q9SM50	2.4e-31	63.52	Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1	[more]
Q8W191	9.1e-15	46.48	Transcription factor HY5-like OS=Arabidopsis thaliana OX=3702 GN=HYH PE=1 SV=1	[more]
A2VD01	3.3e-04	39.39	Cyclic AMP-responsive element-binding protein 3-like protein 2 OS=Xenopus laevis...	[more]
Q1XGE2	3.3e-04	37.93	Transcriptional activator hacA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40...	[more]

BLAST of MC11g0470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142438.1	6.39e-95	98.84	transcription factor HY5-like isoform X1 [Momordica charantia]	[more]
XP_022142521.1	3.33e-89	95.93	transcription factor HY5-like isoform X2 [Momordica charantia]	[more]
XP_022940420.1	2.30e-67	81.29	transcription factor HY5-like isoform X2 [Cucurbita moschata]	[more]
XP_023524406.1	1.33e-66	80.70	transcription factor HY5-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022981221.1	7.64e-66	80.12	transcription factor HY5-like isoform X2 [Cucurbita maxima]	[more]

BLAST of MC11g0470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN91	3.10e-95	98.84	transcription factor HY5-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1CMF5	1.61e-89	95.93	transcription factor HY5-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1FQI7	1.11e-67	81.29	transcription factor HY5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IVY4	3.70e-66	80.12	transcription factor HY5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FK24	3.95e-66	80.12	transcription factor HY5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of MC11g0470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11260.1	1.3e-35	60.00	Basic-leucine zipper (bZIP) transcription factor family protein	[more]
AT3G17609.2	6.5e-16	46.48	HY5-homolog	[more]
AT3G17609.1	1.9e-15	54.08	HY5-homolog	[more]
AT3G17609.3	1.9e-15	54.08	HY5-homolog	[more]
AT3G17609.4	1.9e-15	54.08	HY5-homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..156
None	No IPR available	GENE3D	1.20.5.490	Single helix bin	coord: 111..152 e-value: 1.8E-18 score: 68.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..114
None	No IPR available	PANTHER	PTHR46714:SF6	TRANSCRIPTIONAL ACTIVATOR HAC1	coord: 10..159
None	No IPR available	CDD	cd14704	bZIP_HY5-like	coord: 93..144 e-value: 1.547E-15 score: 64.903
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 92..150
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 88..152 e-value: 2.7E-14 score: 63.5
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 89..150 e-value: 1.1E-12 score: 47.8
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 95..110
IPR004827	Basic-leucine zipper domain	PROSITE	PS50217	BZIP	coord: 90..153 score: 12.414987
IPR044280	Transcriptional activator Hac1/HY5	PANTHER	PTHR46714	TRANSCRIPTIONAL ACTIVATOR HAC1	coord: 10..159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0470	MC11g0470	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0470.1-utr3	MC11g0470.1-utr3-MC11:3656252..3656574	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0470.1-cds	MC11g0470.1-cds-MC11:3656575..3656643	CDS
MC11g0470.1-cds	MC11g0470.1-cds-MC11:3658558..3658714	CDS
MC11g0470.1-cds	MC11g0470.1-cds-MC11:3658838..3659009	CDS
MC11g0470.1-cds	MC11g0470.1-cds-MC11:3659419..3659533	CDS

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0470.1-utr5	MC11g0470.1-utr5-MC11:3659534..3659625	utr5

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0470.1	MC11g0470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0010099	regulation of photomorphogenesis
biological_process	GO:0010218	response to far red light
biological_process	GO:0010114	response to red light
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003677	DNA binding