MC11g0439.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0439.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	TPD1 protein homolog 1-like
Location	MC11: 3447697 .. 3448002 (-)
Sequence length	306
RNA-Seq Expression	MC11g0439.1
Synteny	MC11g0439.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAATTGCCAATGCTCTGTGGGTAACATAAAAGTGAGCCAAAGCCCGACAGGATCCCAAGTGCTGGGAAAGACACAATGGAGAGTTACAATCTCAAACAACTGTGGTTGTTCACAGCTAAGCATATTGTTGGATTGCGTTGGATATCAGACAGTGGAGAATGTTGATCCAGCAATACTGAACAGTGCTGCCAATGTTTGTCTGTTTAACAGTGGAAGGCCACTCCTCAAATCAGCCCCCATTTCCTTCACTTATGCTTGGGATAATCCCTACCCTTTCACCCCCCTCTCCTCCACAACTTACTGT

mRNA sequence

GGTAATTGCCAATGCTCTGTGGGTAACATAAAAGTGAGCCAAAGCCCGACAGGATCCCAAGTGCTGGGAAAGACACAATGGAGAGTTACAATCTCAAACAACTGTGGTTGTTCACAGCTAAGCATATTGTTGGATTGCGTTGGATATCAGACAGTGGAGAATGTTGATCCAGCAATACTGAACAGTGCTGCCAATGTTTGTCTGTTTAACAGTGGAAGGCCACTCCTCAAATCAGCCCCCATTTCCTTCACTTATGCTTGGGATAATCCCTACCCTTTCACCCCCCTCTCCTCCACAACTTACTGT

Coding sequence (CDS)

GGTAATTGCCAATGCTCTGTGGGTAACATAAAAGTGAGCCAAAGCCCGACAGGATCCCAAGTGCTGGGAAAGACACAATGGAGAGTTACAATCTCAAACAACTGTGGTTGTTCACAGCTAAGCATATTGTTGGATTGCGTTGGATATCAGACAGTGGAGAATGTTGATCCAGCAATACTGAACAGTGCTGCCAATGTTTGTCTGTTTAACAGTGGAAGGCCACTCCTCAAATCAGCCCCCATTTCCTTCACTTATGCTTGGGATAATCCCTACCCTTTCACCCCCCTCTCCTCCACAACTTACTGT

Protein sequence

GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAILNSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC

Homology

[Close]

BLAST of MC11g0439.1 vs. NCBI nr
Match: XP_022137447.1 (uncharacterized protein LOC111008881 isoform X2 [Momordica charantia])

HSP 1 Score: 217 bits (553), Expect = 4.32e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL
Sbjct: 20  GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
           NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC
Sbjct: 80  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 121

[Close]

BLAST of MC11g0439.1 vs. NCBI nr
Match: XP_022137438.1 (uncharacterized protein LOC111008881 isoform X1 [Momordica charantia])

HSP 1 Score: 217 bits (553), Expect = 4.32e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL
Sbjct: 20  GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
           NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC
Sbjct: 80  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 121

[Close]

BLAST of MC11g0439.1 vs. NCBI nr
Match: KGN60075.1 (hypothetical protein Csa_001952 [Cucumis sativus])

HSP 1 Score: 132 bits (333), Expect = 1.47e-37
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNC+CS+ +I++SQS TG +V GK +WR TI N C CSQ S+  DC G+ TVE VD +IL
Sbjct: 20  GNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESIL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
             A +VCL N+G+P+  S+PISFTYAWDN +PF+PL S   C
Sbjct: 80  MVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVAC 121

[Close]

BLAST of MC11g0439.1 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 124 bits (310), Expect = 4.64e-34
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNCQCS+G+I + Q  T  +V G+ +W VT+SNNC CSQ ++ LDC G+ + E VD + L
Sbjct: 20  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
            +  N CL N GRP+ KS PISFTYAWD  +PF PLSS   C
Sbjct: 80  TNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVAC 121

[Close]

BLAST of MC11g0439.1 vs. NCBI nr
Match: XP_021298646.1 (TPD1 protein homolog 1-like [Herrania umbratica])

HSP 1 Score: 124 bits (310), Expect = 5.55e-34
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           G CQCS+GNI VSQ+ TG+ V  K +W+VTISNNC C+Q  + L C G+QTVE VD +++
Sbjct: 26  GYCQCSLGNISVSQTKTGTTVQNKPEWQVTISNNCACTQSELKLSCNGFQTVEEVDSSVM 85

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
                 CL N+G+P+  S+ +SF YAWD P+P  PLSS   C
Sbjct: 86  TQTGGECLINNGQPVAPSSNLSFKYAWDTPFPLNPLSSQVNC 127

[Close]

BLAST of MC11g0439.1 vs. ExPASy TrEMBL
Match: A0A6J1CAC8 (uncharacterized protein LOC111008881 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008881 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 2.09e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL
Sbjct: 20  GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
           NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC
Sbjct: 80  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 121

[Close]

BLAST of MC11g0439.1 vs. ExPASy TrEMBL
Match: A0A6J1C8A1 (uncharacterized protein LOC111008881 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008881 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 2.09e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL
Sbjct: 20  GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
           NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC
Sbjct: 80  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 121

[Close]

BLAST of MC11g0439.1 vs. ExPASy TrEMBL
Match: A0A0A0LDN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 7.12e-38
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNC+CS+ +I++SQS TG +V GK +WR TI N C CSQ S+  DC G+ TVE VD +IL
Sbjct: 20  GNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESIL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
             A +VCL N+G+P+  S+PISFTYAWDN +PF+PL S   C
Sbjct: 80  MVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVAC 121

[Close]

BLAST of MC11g0439.1 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 2.25e-34
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           GNCQCS+G+I + Q  T  +V G+ +W VT+SNNC CSQ ++ LDC G+ + E VD + L
Sbjct: 20  GNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYNVKLDCTGFSSEEIVDSSKL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
            +  N CL N GRP+ KS PISFTYAWD  +PF PLSS   C
Sbjct: 80  TNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVAC 121

[Close]

BLAST of MC11g0439.1 vs. ExPASy TrEMBL
Match: A0A6J1BGS0 (TPD1 protein homolog 1-like OS=Herrania umbratica OX=108875 GN=LOC110427443 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 2.69e-34
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           G CQCS+GNI VSQ+ TG+ V  K +W+VTISNNC C+Q  + L C G+QTVE VD +++
Sbjct: 26  GYCQCSLGNISVSQTKTGTTVQNKPEWQVTISNNCACTQSELKLSCNGFQTVEEVDSSVM 85

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 102
                 CL N+G+P+  S+ +SF YAWD P+P  PLSS   C
Sbjct: 86  TQTGGECLINNGQPVAPSSNLSFKYAWDTPFPLNPLSSQVNC 127

[Close]

BLAST of MC11g0439.1 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-14
Identity = 36/98 (36.73%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLSILLDCVGYQTVENVDPAIL 60
           G C C+ G I++    TG ++ G+ +W+VT+ N C C Q  + L C G+   + V P +L
Sbjct: 20  GLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKHVTLSCGGFAPAKPVKPLLL 79

Query: 61  NSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSS 99
               N CL   G  L   A   FTYA   PY F P+ S
Sbjct: 80  QPQGNTCLMIKGAALPAGATAQFTYA-GQPYIFRPVGS 116

[Close]

BLAST of MC11g0439.1 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-12
Identity = 32/103 (31.07%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 1   GNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNC-GCSQLSILLDCVGYQTVENVDPAI 60
           G   CS+ ++ V QS TG  V  K +W V ++N C  C   +  L CVG+ +V  +D ++
Sbjct: 21  GYGDCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQNTELLCVGFNSVTPIDTSL 80

Query: 61  LNSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTYC 103
           L  + + CL N+G+ ++    I F Y WD  +    +     C
Sbjct: 81  LLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123

The following BLAST results are available for this feature:

BLAST of MC11g0439.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0439.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137447.1	4.32e-71	100.00	uncharacterized protein LOC111008881 isoform X2 [Momordica charantia]	[more]
XP_022137438.1	4.32e-71	100.00	uncharacterized protein LOC111008881 isoform X1 [Momordica charantia]	[more]
KGN60075.1	1.47e-37	56.86	hypothetical protein Csa_001952 [Cucumis sativus]	[more]
XP_022141896.1	4.64e-34	53.92	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
XP_021298646.1	5.55e-34	51.96	TPD1 protein homolog 1-like [Herrania umbratica]	[more]

BLAST of MC11g0439.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAC8	2.09e-71	100.00	uncharacterized protein LOC111008881 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C8A1	2.09e-71	100.00	uncharacterized protein LOC111008881 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LDN0	7.12e-38	56.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
A0A6J1CKK7	2.25e-34	53.92	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1BGS0	2.69e-34	51.96	TPD1 protein homolog 1-like OS=Herrania umbratica OX=108875 GN=LOC110427443 PE=4...	[more]

BLAST of MC11g0439.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32090.1	3.6e-14	36.73	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32110.1	5.8e-12	31.07	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 1..102
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 1..102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0439	MC11g0439	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0439.1-cds	MC11g0439.1-cds-MC11:3447697..3448002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0439.1	MC11g0439.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination