MC11g0430.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0430.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA ligase
Location	MC11: 3392490 .. 3392837 (-)
Sequence length	348
RNA-Seq Expression	MC11g0430.1
Synteny	MC11g0430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACAACGAGTACAATTCATCTCCATTTTCCTTCACTCACAAGCTCAAATCCTCCATCCTCTGCTTCCGCGCCGACCATGGCGATTTGGGAGATCACGAAGACGAAGCCTCTCTAAGGAGCCCTAGATCGCCGCTCAAATCCACGGCCAGCGAGCATACTGAGCTCCGGGGAATGTGCCGGAATCTGGTGGCGAGGATCGGCCGGAGCCGGCGGCGGTACCATCACTCCGCGGATTTCAGATACGATCCTTCTAGCTATGCTCTTAATTTCGAGGACGAACACGCTCGCTACGATGACGACTTTCCGATTAGGGATTTCGCTTCGAGATTGCCGGCGTCGCCG

mRNA sequence

ATGTTGAACAACGAGTACAATTCATCTCCATTTTCCTTCACTCACAAGCTCAAATCCTCCATCCTCTGCTTCCGCGCCGACCATGGCGATTTGGGAGATCACGAAGACGAAGCCTCTCTAAGGAGCCCTAGATCGCCGCTCAAATCCACGGCCAGCGAGCATACTGAGCTCCGGGGAATGTGCCGGAATCTGGTGGCGAGGATCGGCCGGAGCCGGCGGCGGTACCATCACTCCGCGGATTTCAGATACGATCCTTCTAGCTATGCTCTTAATTTCGAGGACGAACACGCTCGCTACGATGACGACTTTCCGATTAGGGATTTCGCTTCGAGATTGCCGGCGTCGCCG

Coding sequence (CDS)

ATGTTGAACAACGAGTACAATTCATCTCCATTTTCCTTCACTCACAAGCTCAAATCCTCCATCCTCTGCTTCCGCGCCGACCATGGCGATTTGGGAGATCACGAAGACGAAGCCTCTCTAAGGAGCCCTAGATCGCCGCTCAAATCCACGGCCAGCGAGCATACTGAGCTCCGGGGAATGTGCCGGAATCTGGTGGCGAGGATCGGCCGGAGCCGGCGGCGGTACCATCACTCCGCGGATTTCAGATACGATCCTTCTAGCTATGCTCTTAATTTCGAGGACGAACACGCTCGCTACGATGACGACTTTCCGATTAGGGATTTCGCTTCGAGATTGCCGGCGTCGCCG

Protein sequence

MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGMCRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP

Homology

[Close]

BLAST of MC11g0430.1 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 240 bits (612), Expect = 8.81e-80
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60
           MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

[Close]

BLAST of MC11g0430.1 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183 bits (464), Expect = 2.96e-57
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 4   NEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGMCRN 63
           N+Y+  PFSFT KLKSSILCFR DHGD  ++ED++S R+PRSPLKS A+E  ELRGMCRN
Sbjct: 3   NDYH--PFSFTRKLKSSILCFRRDHGDFLENEDDSSPRTPRSPLKSMAAEFPELRGMCRN 62

Query: 64  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           LVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDFASRLPASP
Sbjct: 63  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 113

[Close]

BLAST of MC11g0430.1 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (461), Expect = 8.76e-57
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60
           M+ N+Y+  PFSFT KLKSSILCFR DHGD  ++E ++S R+PRSPLKS A+E  ELRGM
Sbjct: 1   MMLNDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGM 60

Query: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDFASRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 114

[Close]

BLAST of MC11g0430.1 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 3.46e-56
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 4   NEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGMCRN 63
           N+Y+  PFSFT KLKSSILCFR DHGD  ++E ++S R+PRSPLKS A+E  ELRGMCRN
Sbjct: 3   NDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMCRN 62

Query: 64  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           LVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDFASRLPASP
Sbjct: 63  LVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 113

[Close]

BLAST of MC11g0430.1 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 178 bits (451), Expect = 2.93e-55
Identity = 89/116 (76.72%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60
           M+ NEY+  PFSFT KLKSSI CFR DH D  + ED++S R+PRSPLKS A+E  E+RGM
Sbjct: 1   MMLNEYH--PFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGM 60

Query: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           CRNLVARIGR RRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDFASRLPASP
Sbjct: 61  CRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 114

[Close]

BLAST of MC11g0430.1 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 4.27e-80
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60
           MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM
Sbjct: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60

Query: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116

[Close]

BLAST of MC11g0430.1 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 4.24e-57
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60
           M+ N+Y+  PFSFT KLKSSILCFR DHGD  ++E ++S R+PRSPLKS A+E  ELRGM
Sbjct: 1   MMLNDYH--PFSFTRKLKSSILCFRRDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGM 60

Query: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDFASRLPASP
Sbjct: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 114

[Close]

BLAST of MC11g0430.1 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.42e-55
Identity = 89/116 (76.72%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MLNNEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSPLKSTASEHTELRGM 60
           M+ NEY+  PFSFT KLKSSI CFR DH D  + ED++S R+PRSPLKS A+E  E+RGM
Sbjct: 1   MMLNEYH--PFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGM 60

Query: 61  CRNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           CRNLVARIGR RRRYHHSADFRYDPSSYALNFEDE  R DD+FPIRDFASRLPASP
Sbjct: 61  CRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASP 114

[Close]

BLAST of MC11g0430.1 vs. ExPASy TrEMBL
Match: A0A0A0L4E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 5.32e-43
Identity = 82/115 (71.30%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 4   NEYNSSPFSFTHKLKSSILCFRADHGDLGDHEDEASLRSPRSP-LKSTASEHTELRGMCR 63
           N YN  PFSFTHKLKS I CFR DH    D E   +  SP SP LKS  S+  ELRGMCR
Sbjct: 3   NHYN--PFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCR 62

Query: 64  NLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           +LVARI   SRRRYHHS DFRYDPSSYALNFEDE  RYDD+FPIRDF SRLPASP
Sbjct: 63  SLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPASP 111

[Close]

BLAST of MC11g0430.1 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 1.19e-39
Identity = 79/116 (68.10%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 4   NEYNSSPFSFTHKLKSSI-LCFRADH-GDLGDHEDEASLRSPRSPLKSTASEHTELRGMC 63
           N YN  PFSFTHKLKSSI  CFR DH  +L ++ED+         LKS  S+  ELRGMC
Sbjct: 3   NHYN--PFSFTHKLKSSIPSCFRPDHDAELHENEDD------NPALKSMTSDLPELRGMC 62

Query: 64  RNLVARIG-RSRRRYHHSADFRYDPSSYALNFEDEHARYDDDFPIRDFASRLPASP 116
           R+LVARI   SRRRYHHSADFRYDPSSYALNFEDE  R D++FPIRDF SRLPASP
Sbjct: 63  RSLVARISWPSRRRYHHSADFRYDPSSYALNFEDEQVRDDNEFPIRDFTSRLPASP 110

[Close]

BLAST of MC11g0430.1 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-11
Identity = 53/125 (42.40%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 15  HKLKSSILCFRADHGDLGDHEDEASL-----RSPRSP---LKSTASEHTELRGMCRNLVA 74
           H+++S I C  A+       E EA +     R+PRSP   LKSTA E  ELR  CR + +
Sbjct: 20  HRMRSPICCIGAN----AVVEPEAMMIGGEQRTPRSPYEWLKSTAQE-LELRDRCRRVKS 79

Query: 75  RIGRSRR-----------RYHHS----ADFRYDPSSYALNFEDEHARYDDDFPIRDFASR 117
           RI  + R            +HHS     DF YDP SYALNFED + R DDD    +F +R
Sbjct: 80  RIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFED-NVRADDDGSFPNFTAR 138

[Close]

BLAST of MC11g0430.1 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 46/133 (34.59%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 12  SFTHKLKSSIL---CFRADHGDLGDHEDEASLRSPRSPLKSTASEH-------------- 71
           S   KLKS      CFR  +    D+  +    SP +  KST S H              
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 72  -TELRGMCRNLVARI--------GRSRRRYHHSADFRYDPSSYALNFE--DEHARYDDDF 117
            ++    C++L+ R+        G  +    H+ADF YDPSSYALNF+  DE     D F
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNI-DRF 129

The following BLAST results are available for this feature:

BLAST of MC11g0430.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138148.1	8.81e-80	100.00	uncharacterized protein LOC111009386 [Momordica charantia]	[more]
XP_023523424.1	2.96e-57	80.53	uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]	[more]
XP_022940408.1	8.76e-57	78.45	uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet...	[more]
KAG7031776.1	3.46e-56	79.65	hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022981208.1	2.93e-55	76.72	uncharacterized protein LOC111480417 [Cucurbita maxima]	[more]

BLAST of MC11g0430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CC83	4.27e-80	100.00	uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1FP70	4.24e-57	78.45	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1J1H3	1.42e-55	76.72	uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417...	[more]
A0A0A0L4E2	5.32e-43	71.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1	[more]
A0A5A7VBS3	1.19e-39	68.10	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=...	[more]

BLAST of MC11g0430.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11070.1	5.6e-11	42.40	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G35090.1	2.0e-08	34.59	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..54
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 4..116
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 4..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0430	MC11g0430	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0430.1-cds	MC11g0430.1-cds-MC11:3392490..3392837	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0430.1	MC11g0430.1-protein	polypeptide