MC11g0401.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0401.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transmembrane protein
Location	MC11: 3145309 .. 3145623 (+)
Sequence length	315
RNA-Seq Expression	MC11g0401.1
Synteny	MC11g0401.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAATTTAGAGAGATGGGAAGCAATGAAGAGTGGAGGAAAAATGCAGATACCCACAAAATGACGCCTGAGGATGTGAGAGCAGCGGGAGTGGAAGCCTCCAAAAGGCCGCCGGGGCACCACCCAGGCACAATTCTGCACCAGCGGCGGAGCCTCCCCTACAGCTACACCACCATGACCATCGCCGGCCTCCTCGTCATCGGAGCCACCGGATACTTCACCTTATATGCCCTCAAAAAGCCCGACGCCTCCGCCAAAGACGTCGCCAAGGTCGCCGCCAACGTCGCAGAGCCTGAAGACACCAAGCCCAGGAAG

mRNA sequence

GAAGAATTTAGAGAGATGGGAAGCAATGAAGAGTGGAGGAAAAATGCAGATACCCACAAAATGACGCCTGAGGATGTGAGAGCAGCGGGAGTGGAAGCCTCCAAAAGGCCGCCGGGGCACCACCCAGGCACAATTCTGCACCAGCGGCGGAGCCTCCCCTACAGCTACACCACCATGACCATCGCCGGCCTCCTCGTCATCGGAGCCACCGGATACTTCACCTTATATGCCCTCAAAAAGCCCGACGCCTCCGCCAAAGACGTCGCCAAGGTCGCCGCCAACGTCGCAGAGCCTGAAGACACCAAGCCCAGGAAG

Coding sequence (CDS)

GAAGAATTTAGAGAGATGGGAAGCAATGAAGAGTGGAGGAAAAATGCAGATACCCACAAAATGACGCCTGAGGATGTGAGAGCAGCGGGAGTGGAAGCCTCCAAAAGGCCGCCGGGGCACCACCCAGGCACAATTCTGCACCAGCGGCGGAGCCTCCCCTACAGCTACACCACCATGACCATCGCCGGCCTCCTCGTCATCGGAGCCACCGGATACTTCACCTTATATGCCCTCAAAAAGCCCGACGCCTCCGCCAAAGACGTCGCCAAGGTCGCCGCCAACGTCGCAGAGCCTGAAGACACCAAGCCCAGGAAG

Protein sequence

EEFREMGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLLVIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK

Homology

[Close]

BLAST of MC11g0401.1 vs. NCBI nr
Match: XP_022132331.1 (uncharacterized protein LOC111005207 [Momordica charantia])

HSP 1 Score: 201 bits (511), Expect = 6.16e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL
Sbjct: 1   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK
Sbjct: 61  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 100

[Close]

BLAST of MC11g0401.1 vs. NCBI nr
Match: XP_008452845.1 (PREDICTED: uncharacterized protein LOC103493743 [Cucumis melo])

HSP 1 Score: 192 bits (489), Expect = 7.22e-61
Identity = 93/105 (88.57%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   EEFREMGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT 60
           E  REMGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT
Sbjct: 47  ERNREMGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT 106

Query: 61  IAGLLVIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           +AGLL++GA GYFTLY++KKP+ASAKDVAKVA NVAEPEDTKPRK
Sbjct: 107 VAGLLIVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 151

[Close]

BLAST of MC11g0401.1 vs. NCBI nr
Match: KAA0064577.1 (uncharacterized protein E6C27_scaffold255G002980 [Cucumis melo var. makuwa] >TYK20013.1 uncharacterized protein E5676_scaffold134G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 3.31e-60
Identity = 90/100 (90.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT+AGLL
Sbjct: 1   MGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTVAGLL 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           ++GA GYFTLY++KKP+ASAKDVAKVA NVAEPEDTKPRK
Sbjct: 61  IVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of MC11g0401.1 vs. NCBI nr
Match: XP_004145498.1 (uncharacterized protein LOC101212329 [Cucumis sativus] >KGN55424.1 hypothetical protein Csa_012630 [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 4.52e-58
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGT+LHQRRSLPYSYTTMT+AGLL
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTVLHQRRSLPYSYTTMTVAGLL 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           ++G  GY TLY LKKP+ASAKDVAKVA NVAEPE+TKPRK
Sbjct: 61  IVGTIGYLTLYTLKKPEASAKDVAKVATNVAEPEETKPRK 100

[Close]

BLAST of MC11g0401.1 vs. NCBI nr
Match: XP_022940906.1 (uncharacterized protein LOC111446354 [Cucurbita moschata] >XP_023524434.1 uncharacterized protein LOC111788336 [Cucurbita pepo subsp. pepo] >KAG6608309.1 hypothetical protein SDJN03_01651, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037656.1 hypothetical protein SDJN02_01286, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 1.07e-56
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGT LHQRRSLPYS TTMTIAGL 
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           ++GA GY TLY +KKP+ASAKDVAKVA NVAEPEDTKPRK
Sbjct: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of MC11g0401.1 vs. ExPASy TrEMBL
Match: A0A6J1BRZ2 (uncharacterized protein LOC111005207 OS=Momordica charantia OX=3673 GN=LOC111005207 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 2.98e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL
Sbjct: 1   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK
Sbjct: 61  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 100

[Close]

BLAST of MC11g0401.1 vs. ExPASy TrEMBL
Match: A0A1S3BVM2 (uncharacterized protein LOC103493743 OS=Cucumis melo OX=3656 GN=LOC103493743 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 3.50e-61
Identity = 93/105 (88.57%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   EEFREMGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT 60
           E  REMGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT
Sbjct: 47  ERNREMGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT 106

Query: 61  IAGLLVIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           +AGLL++GA GYFTLY++KKP+ASAKDVAKVA NVAEPEDTKPRK
Sbjct: 107 VAGLLIVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 151

[Close]

BLAST of MC11g0401.1 vs. ExPASy TrEMBL
Match: A0A5A7VC84 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001310 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 1.60e-60
Identity = 90/100 (90.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGTILHQRRSLPYSYTTMT+AGLL
Sbjct: 1   MGSNEEWRKNADTHKMRPEDVKAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTVAGLL 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           ++GA GYFTLY++KKP+ASAKDVAKVA NVAEPEDTKPRK
Sbjct: 61  IVGAIGYFTLYSMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of MC11g0401.1 vs. ExPASy TrEMBL
Match: A0A0A0L315 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651900 PE=4 SV=1)

HSP 1 Score: 184 bits (466), Expect = 2.19e-58
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGT+LHQRRSLPYSYTTMT+AGLL
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTVLHQRRSLPYSYTTMTVAGLL 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           ++G  GY TLY LKKP+ASAKDVAKVA NVAEPE+TKPRK
Sbjct: 61  IVGTIGYLTLYTLKKPEASAKDVAKVATNVAEPEETKPRK 100

[Close]

BLAST of MC11g0401.1 vs. ExPASy TrEMBL
Match: A0A6J1FJP6 (uncharacterized protein LOC111446354 OS=Cucurbita moschata OX=3662 GN=LOC111446354 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 5.16e-57
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           MGSNEEWRKNADTHKM PEDV+AAGVEASKRPPGHHPGT LHQRRSLPYS TTMTIAGL 
Sbjct: 1   MGSNEEWRKNADTHKMKPEDVKAAGVEASKRPPGHHPGTTLHQRRSLPYSITTMTIAGLF 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 105
           ++GA GY TLY +KKP+ASAKDVAKVA NVAEPEDTKPRK
Sbjct: 61  IVGAIGYITLYTMKKPEASAKDVAKVATNVAEPEDTKPRK 100

[Close]

BLAST of MC11g0401.1 vs. TAIR 10
Match: AT4G31830.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 4.4e-31
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 6   MGSNEEWRKNADTHKMTPEDVRAAGVEASKRPPGHHPGTILHQRRSLPYSYTTMTIAGLL 65
           M   E+WRK ADT KM+ E V+AAGVE+SKRPPG +PG +LHQRR+LPYSYTTM +AGL 
Sbjct: 1   MAGEEDWRKTADTTKMSSEGVKAAGVESSKRPPGSNPGGVLHQRRNLPYSYTTMALAGLA 60

Query: 66  VIGATGYFTLYALKKPDASAKDVAKVAANVAEPEDTKPRK 106
           + GA  Y  +YA KKP+A+A DVAK A   A+PEDT PRK
Sbjct: 61  ISGAIMYTVMYAKKKPEATATDVAKAATGTAKPEDTHPRK 100

The following BLAST results are available for this feature:

BLAST of MC11g0401.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0401.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132331.1	6.16e-65	100.00	uncharacterized protein LOC111005207 [Momordica charantia]	[more]
XP_008452845.1	7.22e-61	88.57	PREDICTED: uncharacterized protein LOC103493743 [Cucumis melo]	[more]
KAA0064577.1	3.31e-60	90.00	uncharacterized protein E6C27_scaffold255G002980 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004145498.1	4.52e-58	87.00	uncharacterized protein LOC101212329 [Cucumis sativus] >KGN55424.1 hypothetical ...	[more]
XP_022940906.1	1.07e-56	87.00	uncharacterized protein LOC111446354 [Cucurbita moschata] >XP_023524434.1 unchar...	[more]

BLAST of MC11g0401.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRZ2	2.98e-65	100.00	uncharacterized protein LOC111005207 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A1S3BVM2	3.50e-61	88.57	uncharacterized protein LOC103493743 OS=Cucumis melo OX=3656 GN=LOC103493743 PE=...	[more]
A0A5A7VC84	1.60e-60	90.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L315	2.19e-58	87.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651900 PE=4 SV=1	[more]
A0A6J1FJP6	5.16e-57	87.00	uncharacterized protein LOC111446354 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]

BLAST of MC11g0401.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31830.1	4.4e-31	64.00	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33919:SF1	OS09G0127700 PROTEIN	coord: 10..105
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 10..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0401	MC11g0401	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0401.1-cds	MC11g0401.1-cds-MC11:3145309..3145623	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0401.1	MC11g0401.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane