MC11g0304.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0304.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 2399863 .. 2400174 (-)
Sequence length	309
RNA-Seq Expression	MC11g0304.1
Synteny	MC11g0304.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGAACATCTTCAATCGATGAACGTGCCATTCTCTTGGGAGGCCAGCGAAATTGCACTCGAATCTGAACCCTAGTGCAATCTTGCTTGAAAAATTACCATCGCCGCCGGATCGATCGGAGAGTTCTAGGTTTTCCAACGACTATGGCACGAAGATCTCATATTCTCCTCGAAATAGGGCGGAGAGTGCGAGGATTGAATTGTGGAGGAGGATGCGTGTTTGGGGTGCTGGGAACGAGATATTTTTAAGGAGAGAGATCCCTTTGTGGAAGCCTACAAGAAATGCACTGACGGGCCGTCCATAAGCTGCCGG

mRNA sequence

TTCGAACATCTTCAATCGATGAACGTGCCATTCTCTTGGGAGGCCAGCAAATTGCACTCGAATCTGAACCCTAGTGCAATCTTGCTTGAAAAATTACCATCGCCGCCGGATCGATCGGAGAGTTCTAGGTTTTCCAACGACTATGGCACGAAGATCTCATATTCTCCTCGAAATAGGGCGGAGAGTGCGAGGATTGAATTGTGGGAGGATGCGTGTTTGGGGTGCTGGGAACGAGATATTTTTAAGGAGAGAGATCCCTTTGTGGAAGCCTACAAGAAATGCACTGACGGGCCGTCCATAAGCTGCCGG

Coding sequence (CDS)

TTCGAACATCTTCAATCGATGAACGTGCCATTCTCTTGGGAGGCCAGCAAATTGCACTCGAATCTGAACCCTAGTGCAATCTTGCTTGAAAAATTACCATCGCCGCCGGATCGATCGGAGAGTTCTAGGTTTTCCAACGACTATGGCACGAAGATCTCATATTCTCCTCGAAATAGGGCGGAGAGTGCGAGGATTGAATTGTGGGAGGATGCGTGTTTGGGGTGCTGGGAACGAGATATTTTTAAGGAGAGAGATCCCTTTGTGGAAGCCTACAAGAAATGCACTGACGGGCCGTCCATAAGCTGCCGG

Protein sequence

FEHLQSMNVPFSWEASKLHSNLNPSAILLEKLPSPPDRSESSRFSNDYGTKISYSPRNRAESARIELWEDACLGCWERDIFKERDPFVEAYKKCTDGPSISCR

Homology

[Close]

BLAST of MC11g0304.1 vs. NCBI nr
Match: KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 5.61e-22
Identity = 62/118 (52.54%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 7   MNVPFSWEAS----KLHSNLNPSAILLE----KLPSPPDRSESSRFSNDYGTKISYSP-R 66
           MNVPFSWEA     K  S  +PSA L E    KLPSPP RSES+R S DY   I+YSP R
Sbjct: 1   MNVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPR 60

Query: 67  NRAESARIE---LWEDAC---------LGCWERDIFKERDPFVEAYKKCTDGPSISCR 103
            RAESAR+    LW +A           GC + D  K+ DPFVEAYKKCT+  S+S R
Sbjct: 61  CRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGR 118

[Close]

BLAST of MC11g0304.1 vs. NCBI nr
Match: KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 1.35e-20
Identity = 62/124 (50.00%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 1   FEHLQSM-NVPFSWEAS----KLHSNLNPSAILLE----KLPSPPDRSESSRFSNDYGTK 60
           FE LQ+  NVPFSWEA     KL S+ +P+    E    KLPSPP RSES+R  +DYG  
Sbjct: 15  FELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPYRSESARLPDDYGEA 74

Query: 61  ISYSPRNRAESARI---ELWEDAC---------LGCWERDIFKERDPFVEAYKKCTDGPS 103
           I  S   RA+SAR+    LW  A           GC +RD  KE DPFVEAYKKCT+GPS
Sbjct: 75  IPCSSP-RAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPS 134

[Close]

BLAST of MC11g0304.1 vs. NCBI nr
Match: KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 1.35e-20
Identity = 62/124 (50.00%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 1   FEHLQSM-NVPFSWEAS----KLHSNLNPSAILLE----KLPSPPDRSESSRFSNDYGTK 60
           FE LQ+  NVPFSWEA     KL S+ +P+    E    KLPSPP RSES+R  +DYG  
Sbjct: 15  FELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEA 74

Query: 61  ISYSPRNRAESARI---ELWEDAC---------LGCWERDIFKERDPFVEAYKKCTDGPS 103
           I  S   RA+SAR+    LW  A           GC +RD  KE DPFVEAYKKCT+GPS
Sbjct: 75  IPCSSP-RAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPS 134

[Close]

BLAST of MC11g0304.1 vs. NCBI nr
Match: XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.44e-19
Identity = 61/125 (48.80%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 1   FEHLQSM-NVPFSWEAS----KLHSNLNPSAILLE------KLPSPPDRSESSRFSNDYG 60
           FE L +  NVPFSWEA     K  S  +P+A L E      KLPSPP RSES+R S DY 
Sbjct: 11  FEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSESARLSGDYS 70

Query: 61  TKISYSP-RNRAESARIE---LWEDAC---------LGCWERDIFKERDPFVEAYKKCTD 101
             I+YSP R RAESAR+    LW +A           GC + D  K+ DPFVEAYKKC +
Sbjct: 71  GLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCRN 130

[Close]

BLAST of MC11g0304.1 vs. NCBI nr
Match: RDX89481.1 (hypothetical protein CR513_28785, partial [Mucuna pruriens])

HSP 1 Score: 52.4 bits (124), Expect = 3.33e-05
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 2   EHLQSMNVPFSWE----ASKLHSNLNPSAILLEKLPSPPDRSESSRFSNDYGTKISYSPR 61
           E   ++NVPFSWE     +K+ +  N ++++L+    PP  S SS    D   K+  +  
Sbjct: 34  EEGSTVNVPFSWEHKPGLAKVTNGQNGTSLVLQP---PPCSSSSSGSGTDQRHKVEDTQI 93

Query: 62  NRAESARIELWEDACLGCWERDIFKERDPFVEAYKKCTDGPSI 100
            RA    + +        +  +  KE DPFVEAYKKCT  P I
Sbjct: 94  LRAVQTSLRITS------FRMETPKEEDPFVEAYKKCTQSPFI 127

[Close]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL
Match: A0A5D3D9E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002440 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.72e-22
Identity = 62/118 (52.54%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 7   MNVPFSWEAS----KLHSNLNPSAILLE----KLPSPPDRSESSRFSNDYGTKISYSP-R 66
           MNVPFSWEA     K  S  +PSA L E    KLPSPP RSES+R S DY   I+YSP R
Sbjct: 1   MNVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPR 60

Query: 67  NRAESARIE---LWEDAC---------LGCWERDIFKERDPFVEAYKKCTDGPSISCR 103
            RAESAR+    LW +A           GC + D  K+ DPFVEAYKKCT+  S+S R
Sbjct: 61  CRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGR 118

[Close]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL
Match: A0A0A0KZZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.40e-19
Identity = 61/125 (48.80%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 1   FEHLQSM-NVPFSWEAS----KLHSNLNPSAILLE------KLPSPPDRSESSRFSNDYG 60
           FE L +  NVPFSWEA     K  S  +P+A L E      KLPSPP RSES+R S DY 
Sbjct: 11  FEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSESARLSGDYS 70

Query: 61  TKISYSP-RNRAESARIE---LWEDAC---------LGCWERDIFKERDPFVEAYKKCTD 101
             I+YSP R RAESAR+    LW +A           GC + D  K+ DPFVEAYKKC +
Sbjct: 71  GLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCRN 130

[Close]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL
Match: A0A371GG12 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28785 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.61e-05
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 2   EHLQSMNVPFSWE----ASKLHSNLNPSAILLEKLPSPPDRSESSRFSNDYGTKISYSPR 61
           E   ++NVPFSWE     +K+ +  N ++++L+    PP  S SS    D   K+  +  
Sbjct: 34  EEGSTVNVPFSWEHKPGLAKVTNGQNGTSLVLQP---PPCSSSSSGSGTDQRHKVEDTQI 93

Query: 62  NRAESARIELWEDACLGCWERDIFKERDPFVEAYKKCTDGPSI 100
            RA    + +        +  +  KE DPFVEAYKKCT  P I
Sbjct: 94  LRAVQTSLRITS------FRMETPKEEDPFVEAYKKCTQSPFI 127

[Close]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL
Match: K7MNJ6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G232800 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.09e-05
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 7   MNVPFSWE----ASKL--HSNLNPSAILLEKLPSPPDRSESSRFSNDYGTKISYSPRNRA 66
           +NVPFSWE     SK+  H + N ++++L+    PP  S SS   +D+  K+        
Sbjct: 16  VNVPFSWEHKPGLSKVTTHGHHNGTSMVLQP---PPCSSSSSGSGSDHKHKVE------E 75

Query: 67  ESARIELWEDAC-LGCWERDIFKERDPFVEAYKKCTDGPSI 100
           ES  +   + +  +  +  +  KE DPFVEAYKKCT  P I
Sbjct: 76  ESQILRAVQTSLRISSFRMESQKEEDPFVEAYKKCTRSPFI 107

[Close]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL
Match: A0A445GAU1 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_046771 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.09e-05
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 7   MNVPFSWE----ASKL--HSNLNPSAILLEKLPSPPDRSESSRFSNDYGTKISYSPRNRA 66
           +NVPFSWE     SK+  H + N ++++L+    PP  S SS   +D+  K+        
Sbjct: 16  VNVPFSWEHKPGLSKVTTHGHHNGTSMVLQP---PPCSSSSSGSGSDHKHKVE------E 75

Query: 67  ESARIELWEDAC-LGCWERDIFKERDPFVEAYKKCTDGPSI 100
           ES  +   + +  +  +  +  KE DPFVEAYKKCT  P I
Sbjct: 76  ESQILRAVQTSLRISSFRMESQKEEDPFVEAYKKCTRSPFI 107

The following BLAST results are available for this feature:

BLAST of MC11g0304.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0304.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064469.1	5.61e-22	52.54	hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201...	[more]
KAG6608406.1	1.35e-20	50.00	hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037747.1	1.35e-20	50.00	hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004141298.1	2.44e-19	48.80	uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica...	[more]
RDX89481.1	3.33e-05	33.98	hypothetical protein CR513_28785, partial [Mucuna pruriens]	[more]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9E3	2.72e-22	52.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KZZ9	1.40e-19	48.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1	[more]
A0A371GG12	1.61e-05	33.98	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28785 P...	[more]
K7MNJ6	5.09e-05	35.64	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G232800 PE=4 SV=1	[more]
A0A445GAU1	5.09e-05	35.64	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_046771 PE=4 SV=1	[more]

BLAST of MC11g0304.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0304	MC11g0304	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0304.1-cds	MC11g0304.1-cds-MC11:2399863..2399967	CDS
MC11g0304.1-cds	MC11g0304.1-cds-MC11:2399970..2400125	CDS
MC11g0304.1-cds	MC11g0304.1-cds-MC11:2400127..2400174	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0304.1	MC11g0304.1-protein	polypeptide