MC11g0273.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0273.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Elongation factor
Location	MC11: 2157964 .. 2158455 (+)
Sequence length	264
RNA-Seq Expression	MC11g0273.1
Synteny	MC11g0273.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGTGGAGCAGGATGACTACTCCGCTGCGAAGCTTTTGCTGCAGCGTCGCCTCTCGTCTCGGATTCCGCAAACGCGGTGAGTGAGTTGTTTCTTATGTAAATTTCTCGTCTATTCCAAACTTTGATGGTTTCGTGTTGATTAAAATGGCTTAATTGCTCATAAATCAATGTTGACGGTTCGAATTTCAAATTGATTGATGATGACTGTAATTAATAATTAGAATTGGTGCCAATGGGAATGTGATGATGGTATGATTTTCACTGAGAAATTCAATTGAATACTGAATTTGTGGAAATGGAGCAGGGCTACTGAAACTTGGGCGAGATGTTAGGGCTTGCGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAGGAGGAACGAATCAGAGCTCGGTGAATTCCCAGAAATACGTCGAAAGAGGAGATCCTTATGGAACATCTTTGGGTGGGCTCGATCCGCTCCATGTATTGGCACCAGGTTC

mRNA sequence

ATGGAATGGTGGAGCAGGATGACTACTCCGCTGCGAAGCTTTTGCTGCAGCGTCGCCTCTCGTCTCGGATTCCGCAAACGCGGGCTACTGAAACTTGGGCGAGATGTTAGGGCTTGCGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAGGAGGAACGAATCAGAGCTCGGTGAATTCCCAGAAATACGTCGAAAGAGGAGATCCTTATGGAACATCTTTGGGTGGGCTCGATCCGCTCCATGTATTGGCACCAGGTTC

Coding sequence (CDS)

ATGGAATGGTGGAGCAGGATGACTACTCCGCTGCGAAGCTTTTGCTGCAGCGTCGCCTCTCGTCTCGGATTCCGCAAACGCGGGCTACTGAAACTTGGGCGAGATGTTAGGGCTTGCGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAGGAGGAACGAATCAGAGCTCGGTGAATTCCCAGAAATACGTCGAAAGAGGAGATCCTTATGGAACATCTTTGGGTGGGCTCGATCCGCTCCATGTATTGGCACCAGGTTC

Protein sequence

MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGEFPEIRRKRRSLWNIFGWARSAPCIGTRF

Homology

[Close]

BLAST of MC11g0273.1 vs. NCBI nr
Match: KAG6608437.1 (hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (351), Expect = 4.38e-40
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1   MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
           MEWW ++ +PLR F   VASRLG+RKRGLLKLGRDV+ACEYEDVHVMWEML+RNE+E   
Sbjct: 69  MEWWIKVASPLRRFTSRVASRLGYRKRGLLKLGRDVKACEYEDVHVMWEMLKRNETEAVG 128

Query: 61  FPE-IRRKRRSLWNIFGWARSAPCIGTRF 88
            PE  RRK+R +WNIF WARSAPCIG RF
Sbjct: 129 IPEGRRRKKRPIWNIFWWARSAPCIGCRF 157

[Close]

BLAST of MC11g0273.1 vs. NCBI nr
Match: KAG7024293.1 (hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127 bits (320), Expect = 1.17e-35
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
           M WWSRMT+PLR F   +ASRLGFRKRGLLKLGRDVRACEY DV VMWEM++RNE E+  
Sbjct: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 107

Query: 61  FPEIRRKRRSLWNIFGWARSAPCIGTRF 88
             E RRKRRSL NI  W  S  CIG RF
Sbjct: 108 VQERRRKRRSLLNILWWGGSGACIGCRF 135

[Close]

BLAST of MC11g0273.1 vs. NCBI nr
Match: KAG6591414.1 (hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (292), Expect = 1.04e-30
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
           M WWSRMT+PLR F   +ASRLGFRKRGLLKLGRDVRACEY DV VMWEM++RNE E+  
Sbjct: 23  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 82

Query: 61  FPEIRRKRRSLWNIFGWARS 80
             E RRKRRSL NI  W  S
Sbjct: 83  VQERRRKRRSLLNILWWGGS 102

[Close]

BLAST of MC11g0273.1 vs. NCBI nr
Match: KAF8023211.1 (hypothetical protein BT93_F0653 [Corymbia citriodora subsp. variegata] >KAF8023212.1 hypothetical protein BT93_F0653 [Corymbia citriodora subsp. variegata] >KAF8023213.1 hypothetical protein BT93_F0653 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 107 bits (267), Expect = 3.36e-28
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
          M+WW R   PL++    VA+RLG RK GLLKL  DVR CEY+DVHVMWEML RNE E+  
Sbjct: 1  MQWWGRFKHPLKNVWIGVATRLGMRKSGLLKLQHDVRRCEYDDVHVMWEMLERNEKEIS- 60

Query: 61 FPEIRRK-RRSLWNIFGWARSAPCIGTRF 88
           P+  R  + S W+IFGWAR APC+   F
Sbjct: 61 -PQTSRLIKSSFWSIFGWARCAPCLHPTF 87

[Close]

BLAST of MC11g0273.1 vs. NCBI nr
Match: XP_031406616.1 (uncharacterized protein LOC116215154 [Punica granatum] >OWM70797.1 hypothetical protein CDL15_Pgr014470 [Punica granatum] >PKI31246.1 hypothetical protein CRG98_048364 [Punica granatum])

HSP 1 Score: 103 bits (258), Expect = 8.13e-27
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1  MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
          ++ W +M  PLR+    VA+RLG R RGLLKL +DVR CEY+DVHVMW ML++NE+E   
Sbjct: 3  LDCWDKMRVPLRNLWIDVATRLGVRNRGLLKLRQDVRRCEYDDVHVMWNMLKKNETEAAA 62

Query: 61 FPEIRRKRRSLWNIFGWARSAP 82
              RRK+RS W+ F WAR AP
Sbjct: 63 LSPKRRKKRSFWSFFDWARCAP 84

[Close]

BLAST of MC11g0273.1 vs. ExPASy TrEMBL
Match: A0A0A0L522 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 5.09e-39
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESE-LG 60
          MEWW +M+ PLRSF   VA RLGFRKRGL+KLGRDV+ACEYEDVHVMWEML+RNE++ L 
Sbjct: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 61 EFPEIRRKRRSLWNIFGWARSAPCIG 85
             E R+KR+SLWNIF WARSAPC+G
Sbjct: 61 GSSERRQKRKSLWNIFWWARSAPCLG 86

[Close]

BLAST of MC11g0273.1 vs. ExPASy TrEMBL
Match: A0A218WD46 (uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 3.94e-27
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1  MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
          ++ W +M  PLR+    VA+RLG R RGLLKL +DVR CEY+DVHVMW ML++NE+E   
Sbjct: 3  LDCWDKMRVPLRNLWIDVATRLGVRNRGLLKLRQDVRRCEYDDVHVMWNMLKKNETEAAA 62

Query: 61 FPEIRRKRRSLWNIFGWARSAP 82
              RRK+RS W+ F WAR AP
Sbjct: 63 LSPKRRKKRSFWSFFDWARCAP 84

[Close]

BLAST of MC11g0273.1 vs. ExPASy TrEMBL
Match: A0A059BJK4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00117 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 5.43e-27
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
          M  W R   PL++    VA+RLG RK G LKL  DVR CEY+DVHVMWEML RNE E+ +
Sbjct: 1  MRLWGRFKHPLKNVWLGVAARLGIRKSGHLKLQHDVRRCEYDDVHVMWEMLERNEREISQ 60

Query: 61 FPEIRRKRRSLWNIFGWARSAPCIGTRF 88
              R K RS W+IFGWAR APC+   F
Sbjct: 61 SSR-RIKERSFWSIFGWARCAPCLHRSF 87

[Close]

BLAST of MC11g0273.1 vs. ExPASy TrEMBL
Match: A0A7N2RF01 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 7.94e-27
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1  MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
          MEWW ++  P+R     VA+RLG RK GLLKL  DV  CEYEDV VMWEML+R+E+E   
Sbjct: 3  MEWWDKVKIPIRRVWIGVATRLGIRKSGLLKLRHDVSTCEYEDVRVMWEMLKRSETE-QV 62

Query: 61 FPEIRRKRRSLWNIFGWARSAPCI 84
           PE + K+RS WNIF WAR  PC+
Sbjct: 63 VPE-KSKKRSFWNIFDWARCTPCL 84

[Close]

BLAST of MC11g0273.1 vs. ExPASy TrEMBL
Match: A0A061FFT5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034727 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 4.30e-26
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1   MEWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGE 60
           M ++ RMT P+R     VA+RLG RK GLLKL +DVR+CEYEDVHVMWEMLRRNE+E+G 
Sbjct: 88  MHFFDRMTIPMRRVWTGVATRLGVRKSGLLKLRKDVRSCEYEDVHVMWEMLRRNETEVGR 147

Query: 61  FPEIRRKRRSLWNIFGWARSAP 82
            P  R K+R L N F WAR AP
Sbjct: 148 SPR-RCKKRPLSNCFEWARRAP 168

[Close]

BLAST of MC11g0273.1 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 2  EWWSRMTTPLRSFCCSVASRLGFRKRGLLKLGRDVRACEYEDVHVMWEMLRRNESELGEF 61
          EWW+ M  P R        R+GFR  GLL+L  DV +CEYED+H+MW +L +NE +L   
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNE-DLTRV 67

Query: 62 P---EIRRKRRSLWNIFG 77
          P   + +++++  WN+ G
Sbjct: 68 PIQQQQQQRKKPCWNLLG 84

The following BLAST results are available for this feature:

BLAST of MC11g0273.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0273.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608437.1	4.38e-40	73.03	hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024293.1	1.17e-35	70.45	hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591414.1	1.04e-30	71.25	hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF8023211.1	3.36e-28	57.30	hypothetical protein BT93_F0653 [Corymbia citriodora subsp. variegata] >KAF80232...	[more]
XP_031406616.1	8.13e-27	56.10	uncharacterized protein LOC116215154 [Punica granatum] >OWM70797.1 hypothetical ...	[more]

BLAST of MC11g0273.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L522	5.09e-39	73.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1	[more]
A0A218WD46	3.94e-27	56.10	uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154...	[more]
A0A059BJK4	5.43e-27	56.82	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00117 PE=4 SV...	[more]
A0A7N2RF01	7.94e-27	58.33	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A061FFT5	4.30e-26	63.41	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034727 PE=4 SV=1	[more]

BLAST of MC11g0273.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	2.0e-13	41.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF4	EXPRESSED PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0273	MC11g0273	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0273.1-cds	MC11g0273.1-cds-MC11:2157964..2158045	CDS
MC11g0273.1-cds	MC11g0273.1-cds-MC11:2158274..2158455	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0273.1	MC11g0273.1-protein	polypeptide