MC11g0270.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0270.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1
Location	MC11: 2152732 .. 2153032 (+)
Sequence length	207
RNA-Seq Expression	MC11g0270.1
Synteny	MC11g0270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTAATCAACTCAAATATTCTATACACAAATATTTTCCTTCAACACATCCATTTCATTCCGCTGAATTATTTCTTCTGTAATCCTTTTTTGGTAGGTGGGGGCTGCGGTGTTGGATTGGGACTTGGATGGGGCTTTGGTACAGCTTTCGGGAGCAAGTATCGGTCCTCGAGAATGATATTTCAGGGAATAGAATTTGACAAGAAGGATCAAAATCAAAGTTATGATAACAAGGACTCTAATGATTTATCCAGAAGTTCCAAAGAAGTT

mRNA sequence

GGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGGGGCTGCGGTGTTGGATTGGGACTTGGATGGGGCTTTGGTACAGCTTTCGGGAGCAAGTATCGGTCCTCGAGAATGATATTTCAGGGAATAGAATTTGACAAGAAGGATCAAAATCAAAGTTATGATAACAAGGACTCTAATGATTTATCCAGAAGTTCCAAAGAAGTT

Coding sequence (CDS)

GGAATGCCTTTGAACTTCTTGGGCCTTGGTGCGGGTGGGGGCTGCGGTGTTGGATTGGGACTTGGATGGGGCTTTGGTACAGCTTTCGGGAGCAAGTATCGGTCCTCGAGAATGATATTTCAGGGAATAGAATTTGACAAGAAGGATCAAAATCAAAGTTATGATAACAAGGACTCTAATGATTTATCCAGAAGTTCCAAAGAAGTT

Protein sequence

GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV

Homology

[Close]

BLAST of MC11g0270.1 vs. ExPASy Swiss-Prot
Match: Q8VY77 (Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD5 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-15
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQ 53
          GMP+N LG+GAGGGCGVGLGLGWGFGTAFGS YRSSR+ FQGIE +  D+ +
Sbjct: 29 GMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKRE 80

[Close]

BLAST of MC11g0270.1 vs. NCBI nr
Match: XP_022159843.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 [Momordica charantia])

HSP 1 Score: 133 bits (334), Expect = 9.63e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 20 GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 79

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 80 DLSRSSKEV 88

[Close]

BLAST of MC11g0270.1 vs. NCBI nr
Match: XP_022159826.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 133 bits (334), Expect = 1.26e-38
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 29 GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 88

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 89 DLSRSSKEV 97

[Close]

BLAST of MC11g0270.1 vs. NCBI nr
Match: XP_022159852.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 [Momordica charantia])

HSP 1 Score: 125 bits (313), Expect = 1.45e-35
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLG  GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 20 GMPLNFLGLG--GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 79

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 80 DLSRSSKEV 86

[Close]

BLAST of MC11g0270.1 vs. NCBI nr
Match: XP_022159834.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 125 bits (313), Expect = 1.89e-35
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLG  GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 29 GMPLNFLGLG--GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 88

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 89 DLSRSSKEV 95

[Close]

BLAST of MC11g0270.1 vs. NCBI nr
Match: XP_004141282.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 9.55e-34
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQG+EFD KDQNQSYD KDS 
Sbjct: 29 GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSK 88

Query: 61 DLSRSSKEV 69
          DLSR+S++V
Sbjct: 89 DLSRNSRKV 97

[Close]

BLAST of MC11g0270.1 vs. ExPASy TrEMBL
Match: A0A6J1E001 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 4.66e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 20 GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 79

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 80 DLSRSSKEV 88

[Close]

BLAST of MC11g0270.1 vs. ExPASy TrEMBL
Match: A0A6J1E543 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 6.09e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 29 GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 88

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 89 DLSRSSKEV 97

[Close]

BLAST of MC11g0270.1 vs. ExPASy TrEMBL
Match: A0A6J1E0Y8 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 7.03e-36
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLG  GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 20 GMPLNFLGLG--GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 79

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 80 DLSRSSKEV 86

[Close]

BLAST of MC11g0270.1 vs. ExPASy TrEMBL
Match: A0A6J1E3G5 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 9.16e-36
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLG  GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN
Sbjct: 29 GMPLNFLGLG--GGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 88

Query: 61 DLSRSSKEV 69
          DLSRSSKEV
Sbjct: 89 DLSRSSKEV 95

[Close]

BLAST of MC11g0270.1 vs. ExPASy TrEMBL
Match: A0A0A0L0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 4.62e-34
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSN 60
          GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQG+EFD KDQNQSYD KDS 
Sbjct: 29 GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSK 88

Query: 61 DLSRSSKEV 69
          DLSR+S++V
Sbjct: 89 DLSRNSRKV 97

[Close]

BLAST of MC11g0270.1 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQ 53
          GMP+N LG+GAGGGCGVGLGLGWGFGTAFGS YRSSR+ FQGIE +  D+ +
Sbjct: 29 GMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKRE 80

[Close]

BLAST of MC11g0270.1 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  GMPLNFLGLGAGGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQ 53
          GMP+N LG+GAGGGCGVGLGLGWGFGTAFGS YRSSR+ FQGIE +  D+ +
Sbjct: 29 GMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKRE 80

The following BLAST results are available for this feature:

BLAST of MC11g0270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY77	2.8e-15	75.00	Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=...	[more]

BLAST of MC11g0270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159843.1	9.63e-39	100.00	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 [Momordica ...	[more]
XP_022159826.1	1.26e-38	100.00	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica ...	[more]
XP_022159852.1	1.45e-35	97.10	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 [Momordica ...	[more]
XP_022159834.1	1.89e-35	97.10	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 [Momordica ...	[more]
XP_004141282.1	9.55e-34	89.86	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus...	[more]

BLAST of MC11g0270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E001	4.66e-39	100.00	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 OS=Momordic...	[more]
A0A6J1E543	6.09e-39	100.00	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 OS=Momordic...	[more]
A0A6J1E0Y8	7.03e-36	97.10	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 OS=Momordic...	[more]
A0A6J1E3G5	9.16e-36	97.10	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 OS=Momordic...	[more]
A0A0A0L0F8	4.62e-34	89.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1	[more]

BLAST of MC11g0270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27695.1	2.0e-16	75.00	glycine-rich protein	[more]
AT1G27695.2	2.0e-16	75.00	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..69
None	No IPR available	PANTHER	PTHR19359:SF115	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 5, CHLOROPLASTIC	coord: 1..61
None	No IPR available	PANTHER	PTHR19359	CYTOCHROME B5	coord: 1..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0270	MC11g0270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0270.1-cds	MC11g0270.1-cds-MC11:2152732..2152765	CDS
MC11g0270.1-cds	MC11g0270.1-cds-MC11:2152860..2153032	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0270.1	MC11g0270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0020037	heme binding