MC11g0260.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0260.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 2076872 .. 2077090 (+)
Sequence length	219
RNA-Seq Expression	MC11g0260.1
Synteny	MC11g0260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAACCAAGCATCTCTGTTTTCTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCAGATGCTAACTGTTGAGGGCAGAATTCTAAAGCCAATCGGAGAGAAGCCAATTGGAGTAGCTTTTATCCACCAAGTGAATTCATTAAGCAGCAGAAGTAGCAGTGCTTTTAGAAGCTTGAGTTTTGTGTTGGCGTCTGGGCCTAGTAAAAAAGGCCCCGGACAT

mRNA sequence

TCAACCAAGCATCTCTGTTTTCTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCAGATGCTAACTGTTGAGGGCAGAATTCTAAAGCCAATCGGAGAGAAGCCAATTGGAGTAGCTTTTATCCACCAAGTGAATTCATTAAGCAGCAGAAGTAGCAGTGCTTTTAGAAGCTTGAGTTTTGTGTTGGCGTCTGGGCCTAGTAAAAAAGGCCCCGGACAT

Coding sequence (CDS)

TCAACCAAGCATCTCTGTTTTCTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCAGATGCTAACTGTTGAGGGCAGAATTCTAAAGCCAATCGGAGAGAAGCCAATTGGAGTAGCTTTTATCCACCAAGTGAATTCATTAAGCAGCAGAAGTAGCAGTGCTTTTAGAAGCTTGAGTTTTGTGTTGGCGTCTGGGCCTAGTAAAAAAGGCCCCGGACAT

Protein sequence

STKHLCFLVGVLLMVASTQMLTVEGRILKPIGEKPIGVAFIHQVNSLSSRSSSAFRSLSFVLASGPSKKGPGH

Homology

[Close]

BLAST of MC11g0260.1 vs. NCBI nr
Match: KAG6591405.1 (hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 1.91e-20
Identity = 56/86 (65.12%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPIGEK------------PIGVA-FIHQVNSL 60
          S K LCF+VGVLLMVAS   LTVEGR L+ + EK             IGVA F  QVNSL
Sbjct: 10 SGKRLCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEAIGVAAFRDQVNSL 69

Query: 61 SSRSSSAFRSLSFVLASGPSKKGPGH 73
          SS S S FRSLSFVLASGPSKKGPGH
Sbjct: 70 SSSSHSEFRSLSFVLASGPSKKGPGH 95

[Close]

BLAST of MC11g0260.1 vs. NCBI nr
Match: KGN55240.1 (hypothetical protein Csa_012906 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.13e-18
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPIGEKPIG----------VAFIHQVNSLSSR 60
          STK +CF+VGVLLM+AST  L VEGR+L+   EK             +  + + NSLSS 
Sbjct: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEANSLSSS 65

Query: 61 SSSAFRSLSFVLASGPSKKGPGH 73
          S S+FRSLSFVLASGPSKKGPGH
Sbjct: 66 SRSSFRSLSFVLASGPSKKGPGH 88

[Close]

BLAST of MC11g0260.1 vs. NCBI nr
Match: KAG6608443.1 (hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 8.43e-18
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPIGEK----PIG-VAFIHQVNSLSSRSSSAF 60
          S + LCF+VGVLLMV  TQ ++VEGR+LK + ++    PIG VA++  ++SLS  S SAF
Sbjct: 10 SGRRLCFVVGVLLMVVWTQFVSVEGRVLKGVADEAVVEPIGMVAYMATLDSLSGSSRSAF 69

Query: 61 RSLSFVLASGPSKKGPGH 73
           SLSFVL+SGPSKKGPGH
Sbjct: 70 SSLSFVLSSGPSKKGPGH 87

[Close]

BLAST of MC11g0260.1 vs. NCBI nr
Match: KAA0064422.1 (hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK20165.1 hypothetical protein E5676_scaffold134G002970 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.07e-10
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 14 MVASTQMLTVEGRILKP-------IGEKPIGV--AFIHQVNSLSSRSSSAFRSLSFVLAS 73
          M+AST  L VEGR+L+        + EK  GV    + + NSLSS S S+FRSLSFVLAS
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPVVMDEANSLSSSSRSSFRSLSFVLAS 60

[Close]

BLAST of MC11g0260.1 vs. NCBI nr
Match: XP_019071956.1 (PREDICTED: uncharacterized protein LOC109121646 [Vitis vinifera] >RVW40478.1 hypothetical protein CK203_092371 [Vitis vinifera] >RVX00070.1 hypothetical protein CK203_024839 [Vitis vinifera])

HSP 1 Score: 52.0 bits (123), Expect = 1.65e-06
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPI----------GEKPIGVAFIHQVNSLSSR 60
          S K L F++ VL++V STQ   V  R L+            G++ +GVA    V+S +S 
Sbjct: 11 SVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFAVSSNNSS 70

Query: 61 SSSAFRSLSFVLASGPSKKGPGH 73
            S+ RSL++ LASGPSK+GPGH
Sbjct: 71 KRSSVRSLTYKLASGPSKRGPGH 93

[Close]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL
Match: A0A0A0KZV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.03e-18
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPIGEKPIG----------VAFIHQVNSLSSR 60
          STK +CF+VGVLLM+AST  L VEGR+L+   EK             +  + + NSLSS 
Sbjct: 6  STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPIVLVDEANSLSSS 65

Query: 61 SSSAFRSLSFVLASGPSKKGPGH 73
          S S+FRSLSFVLASGPSKKGPGH
Sbjct: 66 SRSSFRSLSFVLASGPSKKGPGH 88

[Close]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL
Match: A0A5D3D9C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002970 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.16e-11
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 14 MVASTQMLTVEGRILKP-------IGEKPIGV--AFIHQVNSLSSRSSSAFRSLSFVLAS 73
          M+AST  L VEGR+L+        + EK  GV    + + NSLSS S S+FRSLSFVLAS
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPVVMDEANSLSSSSRSSFRSLSFVLAS 60

[Close]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL
Match: A0A5B7BBR4 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035355 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.14e-07
Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1   STKHLCFLVGVLLMVASTQMLTVEGRILKPIGEKPIG----------VAFIHQVNSLSSR 60
           S K LCF++GV+++V  TQ   V  R L+   E  I           V F    N+ SS 
Sbjct: 31  SMKSLCFVLGVMILVMGTQFSVVHCRALRSTEETTIAGCERANGAEMVPFAVSSNN-SSS 90

Query: 61  SSSAFRSLSFVLASGPSKKGPGH 73
           S SA RSL F LASGPSKKGPGH
Sbjct: 91  SRSAVRSLVFKLASGPSKKGPGH 112

[Close]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL
Match: A0A438DYT8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024839 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.00e-07
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPI----------GEKPIGVAFIHQVNSLSSR 60
          S K L F++ VL++V STQ   V  R L+            G++ +GVA    V+S +S 
Sbjct: 11 SVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFAVSSNNSS 70

Query: 61 SSSAFRSLSFVLASGPSKKGPGH 73
            S+ RSL++ LASGPSK+GPGH
Sbjct: 71 KRSSVRSLTYKLASGPSKRGPGH 93

[Close]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL
Match: F6GZW6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09680 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.00e-07
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1  STKHLCFLVGVLLMVASTQMLTVEGRILKPI----------GEKPIGVAFIHQVNSLSSR 60
          S K L F++ VL++V STQ   V  R L+            G++ +GVA    V+S +S 
Sbjct: 11 SVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFAVSSNNSS 70

Query: 61 SSSAFRSLSFVLASGPSKKGPGH 73
            S+ RSL++ LASGPSK+GPGH
Sbjct: 71 KRSSVRSLTYKLASGPSKRGPGH 93

The following BLAST results are available for this feature:

BLAST of MC11g0260.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591405.1	1.91e-20	65.12	hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55240.1	2.13e-18	57.83	hypothetical protein Csa_012906 [Cucumis sativus]	[more]
KAG6608443.1	8.43e-18	60.26	hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0064422.1	1.07e-10	57.97	hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK201...	[more]
XP_019071956.1	1.65e-06	42.17	PREDICTED: uncharacterized protein LOC109121646 [Vitis vinifera] >RVW40478.1 hyp...	[more]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZV6	1.03e-18	57.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1	[more]
A0A5D3D9C4	5.16e-11	57.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5B7BBR4	2.14e-07	46.99	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035355...	[more]
A0A438DYT8	8.00e-07	42.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024839 PE=4 SV=1	[more]
F6GZW6	8.00e-07	42.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09680 PE=4 SV=...	[more]

BLAST of MC11g0260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0260	MC11g0260	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0260.1-cds	MC11g0260.1-cds-MC11:2076872..2077090	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0260.1	MC11g0260.1-protein	polypeptide