MC11g0102.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0102.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transmembrane protein
Location	MC11: 756201 .. 756569 (+)
Sequence length	369
RNA-Seq Expression	MC11g0102.1
Synteny	MC11g0102.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCATGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGTCGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTTTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATGGTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGACCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCC

mRNA sequence

ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCATGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGTCGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTTTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATGGTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGACCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCC

Coding sequence (CDS)

ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCATGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGTCGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTTTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATGGTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGACCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCC

Protein sequence

MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKTVFDFKLFLFALILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRSKWSP

Homology

[Close]

BLAST of MC11g0102.1 vs. NCBI nr
Match: KGN60038.1 (hypothetical protein Csa_001668 [Cucumis sativus])

HSP 1 Score: 181 bits (458), Expect = 3.44e-56
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKT-VFDFKLFLFAL 60
           MSW+V ERGPEWKYGW ER M+SMSLPPMPLLAF GVVVLLLSLQ++  V DFKL L AL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRS 120
             L+IFV NS+AV GTV G AS+RT +RS +EAE+TSPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLMIFVANSVAVSGTV-GSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSP 123
           KWSP
Sbjct: 121 KWSP 123

[Close]

BLAST of MC11g0102.1 vs. NCBI nr
Match: KAA0063287.1 (hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 8.08e-55
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKT-VFDFKLFLFAL 60
           MSW+V ERGPEWKYGW ER M SMSLPPMPLLAF GVVVLLLSLQ++  V DFKL L AL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRS 120
             L+IF  NS+AV GTV G A++RT +RS +EAE+TSPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLIIFFANSVAVSGTV-GSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSP 123
           KWSP
Sbjct: 121 KWSP 123

[Close]

BLAST of MC11g0102.1 vs. NCBI nr
Match: TYK31488.1 (hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 3.29e-54
Identity = 93/124 (75.00%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKT-VFDFKLFLFAL 60
           MSW+V ERGPEWKYGW ER M SMSLPPMPLLAF GVVVLLLSLQ++  V DFKL L AL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRS 120
              +IF  NS+AV GTV G A++RT +RS +EAE+TSPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFFIIFFANSVAVSGTV-GSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSP 123
           KWSP
Sbjct: 121 KWSP 123

[Close]

BLAST of MC11g0102.1 vs. NCBI nr
Match: KAG6608597.1 (hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (373), Expect = 2.22e-43
Identity = 83/115 (72.17%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAL 60
           MSW   ER  EWKYGWAERTM SMSLPPMPLLAF GVV+LLLSLQ++ + FDFKLFL AL
Sbjct: 1   MSWAEEERVQEWKYGWAERTMASMSLPPMPLLAFLGVVLLLLSLQSQDMAFDFKLFLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNR 114
             LLIF+ NS+ V G+V   A +RT  RS +EAEKTSPWG AVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVAGSVASTA-MRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of MC11g0102.1 vs. NCBI nr
Match: KAG7037914.1 (hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (370), Expect = 6.34e-43
Identity = 82/115 (71.30%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAL 60
           MSW   ER PEWKYGWAERT+ SMS PPMPLLAF GVV+LLLSLQ++ + FDFKLFL AL
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMAFDFKLFLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNR 114
             LLIF+ NS+ V G+V   A +RT  RS +EAEKTSPWG AVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTA-MRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of MC11g0102.1 vs. ExPASy TrEMBL
Match: A0A0A0LE80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872200 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 1.66e-56
Identity = 96/124 (77.42%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKT-VFDFKLFLFAL 60
           MSW+V ERGPEWKYGW ER M+SMSLPPMPLLAF GVVVLLLSLQ++  V DFKL L AL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRS 120
             L+IFV NS+AV GTV G AS+RT +RS +EAE+TSPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLMIFVANSVAVSGTV-GSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSP 123
           KWSP
Sbjct: 121 KWSP 123

[Close]

BLAST of MC11g0102.1 vs. ExPASy TrEMBL
Match: A0A5A7V8G0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001100 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 3.91e-55
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKT-VFDFKLFLFAL 60
           MSW+V ERGPEWKYGW ER M SMSLPPMPLLAF GVVVLLLSLQ++  V DFKL L AL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRS 120
             L+IF  NS+AV GTV G A++RT +RS +EAE+TSPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLIIFFANSVAVSGTV-GSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSP 123
           KWSP
Sbjct: 121 KWSP 123

[Close]

BLAST of MC11g0102.1 vs. ExPASy TrEMBL
Match: A0A5D3E6P1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008040 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 1.59e-54
Identity = 93/124 (75.00%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKT-VFDFKLFLFAL 60
           MSW+V ERGPEWKYGW ER M SMSLPPMPLLAF GVVVLLLSLQ++  V DFKL L AL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNRPYFRS 120
              +IF  NS+AV GTV G A++RT +RS +EAE+TSPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFFIIFFANSVAVSGTV-GSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSP 123
           KWSP
Sbjct: 121 KWSP 123

[Close]

BLAST of MC11g0102.1 vs. ExPASy TrEMBL
Match: A0A6J1FL09 (uncharacterized protein LOC111446211 OS=Cucurbita moschata OX=3662 GN=LOC111446211 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 2.51e-42
Identity = 81/115 (70.43%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MSWMVGERGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAL 60
           MSW   ER PEWKYGWAERT+ SMS PPMPLLAF GVV+LLLSLQ++ +  DFKLFL AL
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMALDFKLFLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTSPWGVAVLLFLLLILLWNR 114
             LLIF+ NS+ V G+V   A +RT  RS +EAEKTSPWG AVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTA-MRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

[Close]

BLAST of MC11g0102.1 vs. ExPASy TrEMBL
Match: A0A6P9DT84 (uncharacterized protein LOC118343814 OS=Juglans regia OX=51240 GN=LOC118343814 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.63e-25
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 0


Query: 1   MSWMVGER-GPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQT---------KTVF 60
           M W   ER GP WK+GW E+T+ S+S PP+PL+A  G++VLLL L +         +TV 
Sbjct: 1   MGWFFRERRGPAWKHGWTEQTLASISPPPLPLVAIAGIMVLLLLLNSYVTYRSQIRQTVI 60

Query: 61  DFKLFLFALILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKTS--PWGVAVLLFLLL 120
            FKLFLF L +LLIF+++S+  YG +V  A + T   +V +AE     PWG+A+L+ +L+
Sbjct: 61  TFKLFLFVLPVLLIFLMHSITKYGRIVIAAPI-TKNDTVHQAESLGLLPWGLALLVLVLV 120

Query: 121 ILLWNRPYFRSKWSP 123
           ++L  +PYF S W P
Sbjct: 121 LMLSYQPYFHSMWWP 134

[Close]

BLAST of MC11g0102.1 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14
Identity = 49/135 (36.30%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 1   MSWMVGE-RGPEWKYGWAERTMTSMSLPPMPLLAFFGVVVLLLSLQT---------KTVF 60
           M W + E RG  WK GW E T+ + S PP+ LLA   ++ LLL L +         KT  
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAA 60

Query: 61  DFKLFLFALILLLIFVVNSMAVYGTVV--GPASVRTTTRSVREAEKTSPWGVAVLLFLLL 120
           + KLF+  L +L +FV+ S++    ++     SVR         E   PWGV ++L LLL
Sbjct: 61  NLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLILLL 120

Query: 121 ILLWNRPYFRSKWSP 124
           +L+  + YF S W P
Sbjct: 121 LLVSKQSYFHSLWYP 135

The following BLAST results are available for this feature:

BLAST of MC11g0102.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0102.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60038.1	3.44e-56	77.42	hypothetical protein Csa_001668 [Cucumis sativus]	[more]
KAA0063287.1	8.08e-55	75.81	hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa]	[more]
TYK31488.1	3.29e-54	75.00	hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa]	[more]
KAG6608597.1	2.22e-43	72.17	hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037914.1	6.34e-43	71.30	hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC11g0102.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE80	1.66e-56	77.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872200 PE=4 SV=1	[more]
A0A5A7V8G0	3.91e-55	75.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E6P1	1.59e-54	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FL09	2.51e-42	70.43	uncharacterized protein LOC111446211 OS=Cucurbita moschata OX=3662 GN=LOC1114462...	[more]
A0A6P9DT84	2.63e-25	44.44	uncharacterized protein LOC118343814 OS=Juglans regia OX=51240 GN=LOC118343814 P...	[more]

BLAST of MC11g0102.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	4.4e-14	36.30	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..123
None	No IPR available	PANTHER	PTHR33306:SF26	PROTEIN, PUTATIVE-RELATED	coord: 1..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0102	MC11g0102	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0102.1-cds	MC11g0102.1-cds-MC11:756201..756569	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0102.1	MC11g0102.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane