MC11g0059.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0059.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription activator-like protein
Location	MC11: 425979 .. 426648 (-)
Sequence length	670
RNA-Seq Expression	MC11g0059.1
Synteny	MC11g0059.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGTCTTGTAGAATTGCCAGGATAGTAGTACAGACACGTGGCGTAAAATAAAAATCAATTTAAAAGGTAGAAACCAACGAGGGGTTTGCGAATCAGAAAACAGAAGTAAAAAATGGAAAGGAATCAGAAGATCGAGATGGAGCGGGAGGAGCAGAGGCGAGAAGAAACGAAGAAGATGGAGCAACAACCGCCGCAAAATATTTCTCCGATGCAACCGTTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCCAACAGCAACTCCTGAAGAAGAAACCGGCGAGCGACATGCAGAGCGCCGATGGACCGGTTGAAGCCGGAATGAAGCCGAAGCATGCGCCTCCGCCGTCGTCCGGCGACAGAGATATCGACATCACCGGCCAGTCGTATTTTCAGTAGTTTGGTAAGGCGGCACGTACGTTTCAATCGTTGGCTGCTAATTATTGCCTTTTGTGTTCGTTTAATAATCGGGAGAGGTATTTCGTATATTGTAATCTGGTTCTTCTCGTTACTCGATTGCGCGTTTCTTGCGAATCTCTGAATGATTACAACTGATATTCGCGAGGAATTTGGCAGATAATTTTAATCCGAACAAAATTAGGGCTTACATGGATACTAGGCTAGTATACGTGTGGAAGCTTGTGGTTTTATTTTAC

mRNA sequence

GGCGTCTTGTAGAATTGCCAGGATAGTAGTACAGACACGTGGCGTAAAATAAAAATCAATTTAAAAGGTAGAAACCAACGAGGGGTTTGCGAATCAGAAAACAGAAGTAAAAAATGGAAAGGAATCAGAAGATCGAGATGGAGCGGGAGGAGCAGAGGCGAGAAGAAACGAAGAAGATGGAGCAACAACCGCCGCAAAATATTTCTCCGATGCAACCGTTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCCAACAGCAACTCCTGAAGAAGAAACCGGCGAGCGACATGCAGAGCGCCGATGGACCGGTTGAAGCCGGAATGAAGCCGAAGCATGCGCCTCCGCCGTCGTCCGGCGACAGAGATATCGACATCACCGGCCAGTCGTATTTTCAGTAGTTTGGTAAGGCGGCACGTACGTTTCAATCGTTGGCTGCTAATTATTGCCTTTTGTGTTCGTTTAATAATCGGGAGAGGTATTTCGTATATTGTAATCTGGTTCTTCTCGTTACTCGATTGCGCGTTTCTTGCGAATCTCTGAATGATTACAACTGATATTCGCGAGGAATTTGGCAGATAATTTTAATCCGAACAAAATTAGGGCTTACATGGATACTAGGCTAGTATACGTGTGGAAGCTTGTGGTTTTATTTTAC

Coding sequence (CDS)

ATGGAAAGGAATCAGAAGATCGAGATGGAGCGGGAGGAGCAGAGGCGAGAAGAAACGAAGAAGATGGAGCAACAACCGCCGCAAAATATTTCTCCGATGCAACCGTTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCCAACAGCAACTCCTGAAGAAGAAACCGGCGAGCGACATGCAGAGCGCCGATGGACCGGTTGAAGCCGGAATGAAGCCGAAGCATGCGCCTCCGCCGTCGTCCGGCGACAGAGATATCGACATCACCGGCCAGTCGTATTTTCAGTAG

Protein sequence

MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKPASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ

Homology

[Close]

BLAST of MC11g0059.1 vs. NCBI nr
Match: XP_022132786.1 (uncharacterized protein LOC111005558 [Momordica charantia])

HSP 1 Score: 189 bits (479), Expect = 3.55e-60
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP
Sbjct: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          ASD QSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. NCBI nr
Match: XP_022936823.1 (uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 uncharacterized protein LOC111476971 [Cucurbita maxima] >XP_023535795.1 uncharacterized protein LOC111797123 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172 bits (437), Expect = 9.08e-54
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          ME NQK+EMERE+QRREETKK+EQ+PP  ISPMQPLTESAYGGGMYGAEEGQQQ L+KKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          ASD QSADGPVE+GMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. NCBI nr
Match: KAG6591229.1 (hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024115.1 hypothetical protein SDJN02_12928, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (433), Expect = 3.70e-53
Identity = 87/99 (87.88%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          ME NQK+EMERE+QRREETKK+EQ+PP  ISPMQPLTESAYGGGMYG EEGQQQ L+KKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          ASD QSADGPVE+GMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. NCBI nr
Match: XP_038899828.1 (uncharacterized protein LOC120087055 [Benincasa hispida])

HSP 1 Score: 160 bits (405), Expect = 6.90e-49
Identity = 82/99 (82.83%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          ME NQK+EMERE+QRREE+KKMEQQPP  ISPM+PLTESAYGGGMYG EEG+++ L+KKP
Sbjct: 1  MESNQKMEMEREQQRREESKKMEQQPPHYISPMKPLTESAYGGGMYGGEEGEERSLQKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          AS+ QSADGPVE  MKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASETQSADGPVEREMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. NCBI nr
Match: XP_008452943.1 (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 145 bits (367), Expect = 4.56e-43
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 1   MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLL--KK 60
           ME  Q+IEMERE+QRRE++KK+EQ+PP  ISPMQPLTESAYGGGMYG EEG Q+ L  KK
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  KPASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
            PAS  QSADGPVEA MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

[Close]

BLAST of MC11g0059.1 vs. ExPASy TrEMBL
Match: A0A6J1BT98 (uncharacterized protein LOC111005558 OS=Momordica charantia OX=3673 GN=LOC111005558 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 1.72e-60
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP
Sbjct: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          ASD QSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. ExPASy TrEMBL
Match: A0A6J1IJZ9 (uncharacterized protein LOC111476971 OS=Cucurbita maxima OX=3661 GN=LOC111476971 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 4.40e-54
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          ME NQK+EMERE+QRREETKK+EQ+PP  ISPMQPLTESAYGGGMYGAEEGQQQ L+KKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          ASD QSADGPVE+GMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. ExPASy TrEMBL
Match: A0A6J1FEB2 (uncharacterized protein LOC111443294 OS=Cucurbita moschata OX=3662 GN=LOC111443294 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 4.40e-54
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60
          ME NQK+EMERE+QRREETKK+EQ+PP  ISPMQPLTESAYGGGMYGAEEGQQQ L+KKP
Sbjct: 1  METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61 ASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
          ASD QSADGPVE+GMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61 ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of MC11g0059.1 vs. ExPASy TrEMBL
Match: A0A1S3BV26 (uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 2.21e-43
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 1   MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEEGQQQLL--KK 60
           ME  Q+IEMERE+QRRE++KK+EQ+PP  ISPMQPLTESAYGGGMYG EEG Q+ L  KK
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  KPASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
            PAS  QSADGPVEA MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

[Close]

BLAST of MC11g0059.1 vs. ExPASy TrEMBL
Match: A0A0A0L393 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 6.97e-38
Identity = 76/102 (74.51%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MERNQKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAEE-GQQQLL--K 60
           ME  QKIEMERE+QRREE+KK+EQ+PP  IS MQPLTE AYGGGMYG ++ G Q  L  K
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDMQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99
           K PAS  QSADGPV A MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of MC11g0059.1 vs. TAIR 10
Match: AT5G42290.1 (transcription activator-related )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 52/113 (46.02%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 5   QKIEMEREEQRREETKKMEQQPPQNISPMQPLTESAYGGGMYGAE--------------- 64
           +K   +  E+ R++ +  + QPP  IS MQP+T  AYGGG+YG +               
Sbjct: 2   EKEPKQEPEEGRDKYEPHQHQPPY-ISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNI 61

Query: 65  --EGQQQLLKKKPASDMQSADGPVEA-GMKPKHAPPPSSGDRDIDITGQSYFQ 100
             E QQQ   + PASD QSADGP E   + PKH  P SSGDRD+DITGQSY Q
Sbjct: 62  EKEPQQQ---RPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

The following BLAST results are available for this feature:

BLAST of MC11g0059.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0059.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132786.1	3.55e-60	98.99	uncharacterized protein LOC111005558 [Momordica charantia]	[more]
XP_022936823.1	9.08e-54	88.89	uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 unchar...	[more]
KAG6591229.1	3.70e-53	87.88	hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038899828.1	6.90e-49	82.83	uncharacterized protein LOC120087055 [Benincasa hispida]	[more]
XP_008452943.1	4.56e-43	78.22	PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo]	[more]

BLAST of MC11g0059.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT98	1.72e-60	98.99	uncharacterized protein LOC111005558 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1IJZ9	4.40e-54	88.89	uncharacterized protein LOC111476971 OS=Cucurbita maxima OX=3661 GN=LOC111476971...	[more]
A0A6J1FEB2	4.40e-54	88.89	uncharacterized protein LOC111443294 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A1S3BV26	2.21e-43	78.22	uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=...	[more]
A0A0A0L393	6.97e-38	74.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1	[more]

BLAST of MC11g0059.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42290.1	1.3e-13	46.02	transcription activator-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0059	MC11g0059	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0059.1-utr3	MC11g0059.1-utr3-MC11:425979..426235	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0059.1-cds	MC11g0059.1-cds-MC11:426236..426535	CDS

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0059.1-utr5	MC11g0059.1-utr5-MC11:426536..426648	utr5

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0059.1	MC11g0059.1-protein	polypeptide