MC11g0047.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0047.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	High mobility group B protein 2
Location	MC11: 330724 .. 332386 (-)
Sequence length	740
RNA-Seq Expression	MC11g0047.1
Synteny	MC11g0047.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACACGCAGGTCCGCTCCCTCCACCCTCTTCAAACCCTAAACCTAACCCAGCCTCGCTCCGGAGCCCCCCACCGAGGTTCGTTTCATCGATCTCCTTCCAATTCCGACCTAATTTCACGTCTTTTCATTGTTTTCCTTCGAGATTGTTGCTGATCCGATCTTATAACTGCAGGATTCGACATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGTGAGTTTTTTTTTTTTTTTTCTCGCCCTATTTCTCCGTCGGATGTGTTTAATTTATAGCTCTGATCGGCCCTAGATTTAAGAAGCTTCGTTGCTTAAATTACCTTTGTAAAAGCTATGCGTTGACCTTTTCTTTTTTGATTGATCGGTTTTGGCGATCTTTTTTGTAGGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAAGCAGGGAAGGATCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGTAATTATTTCATTTTTCAATTTACTTTTAGATGTCTGAATTACGCTGCTTGACTGCAAATTATTCATTCGGATGGTTGTAGAGTTGGAAAAATTGCAAACAAGGAAGAAAAGAACTATGAAGTTGTTTTCGGTGATTTTTGTTTAAGGATGTTAAATAAGCCGGCTTTCAACAAAACGATCTCTGTGTTATATGTGTATTTAGCTAGTGGACCCGTTCTTTTGTTTTATCTGTAAGTCGATTACGTATCTAAAATCTGTGTTGTCATGTTGTTGCACGTTTTGTAATTAAAGGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGTAAGCTATTTACCTTTGTCTAATTGTCAATTCTTTTTTCTTGTCCCCATTTCATATTATATAAATTCTTTTATGGAAATGAGCAGTTATAATTGACCTACAAATGATACCATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCAGATGCTGTACGTGATACCTCTCGTAGTATTTTCTAAATTTCTCCTGGTATTATAAACTCTGTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGTACTGAAAACTTTCCGAATCTTATATTTTGCAGCTGTATTTTATTTTGTAAATTCATTATCTCTCCCTGCTCCATTTGAGTTCAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGTTAGTGGGTTGAAGAATTTTTTCCAGTCATTATTGTGCTTTGTACCCTTTCACTTATTTCATTTCTCTCTTGTGGTTGCAGGAGGAAGATGACGAGTAATGAAGATGTAGATGGTAGTAAAGTCATTTAGGCTGTCAGTGAACTTGATCGTTCTATATTAATGGTCTGATCATTTCCTGTTAATTGTTTTTTATATCATGCAAATATATTAGTATCTCCCTGTTATTTTGTTTGTGCATTCAGAAACGAATGGTTGTAATGGGAGATCATCTGTCTTGTACCTTACAATGTTAGTTATTCCAATC

mRNA sequence

TCACACGCAGGTCCGCTCCCTCCACCCTCTTCAAACCCTAAACCTAACCCAGCCTCGCTCCGGAGCCCCCCACCGAGGTTCGACATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAAGCAGGGAAGGATCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGAGGAAGATGACGAGTAATGAAGATGTAGATGGTAGTAAAGTCATTTAGGCTGTCAGTGAACTTGATCGTTCTATATTAATGGTCTGATCATTTCCTGTTAATTGTTTTTTATATCATGCAAATATATTAGTATCTCCCTGTTATTTTGTTTGTGCATTCAGAAACGAATGGTTGTAATGGGAGATCATCTGTCTTGTACCTTACAATGTTAGTTATTCCAATC

Coding sequence (CDS)

TCACACGCAGGTCCGCTCCCTCCACCCTCTTCAAACCCTAAACCTAACCCAGCCTCGCTCCGGAGCCCCCCACCGAGGTTCGACATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAAGCAGGGAAGGATCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGAGGAAGATGACGAGTAA

Protein sequence

SHAGPLPPPSSNPKPNPASLRSPPPRFDMKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEEDDE

Homology

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BLAST of MC11g0047.1 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.2e-47
Identity = 114/152 (75.00%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSV-KKGAA-KAGATRGK-KAGKDPNKPKRPASAFFVFMEEFRK 88
           MKGGKSK+ESK+AD KL+V KKGAA KA    GK KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 89  KFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 148
            FN+E+P NKAVSAVGKAAG KWK++SDAEKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 149 NAAEEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
              +E+ESEKS+SEVND++D +EGS EEEDD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of MC11g0047.1 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41
Identity = 103/149 (69.13%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of MC11g0047.1 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.5e-39
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPAKG----AKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of MC11g0047.1 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36
Identity = 96/149 (64.43%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSK+   K+D KL+VKK AA    T  KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKT--KKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           E++PNNK+V+ VGKA G KWK L+ AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
           EE+ES+KS SEVNDD++  +GS E++ ++
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGEDDSED 142

[Close]

BLAST of MC11g0047.1 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-35
Identity = 99/158 (62.66%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVK-KGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKF 88
           MKG KSK  + KADAKL+VK KGA K    R  KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 89  NEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 148
            E+NP NK+V+AVGKAAG +WKSLS+++KAPY+AKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 149 A--------EEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
           A        +E+ES+KS SEVN DED +EGSEE+EDD+
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDD 156

[Close]

BLAST of MC11g0047.1 vs. NCBI nr
Match: XP_022142588.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 261 bits (668), Expect = 6.53e-87
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           EEDESEKSMSEVNDDEDGDEGSEEEEDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

[Close]

BLAST of MC11g0047.1 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 243 bits (619), Expect = 1.91e-79
Identity = 137/149 (91.95%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKS+SKKADAKL+VKKGAA AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS++DAEKAPYIAKADKRK+EYEKNMKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           EEDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 149

[Close]

BLAST of MC11g0047.1 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 239 bits (610), Expect = 4.19e-78
Identity = 138/149 (92.62%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKAD KL+VKKGAA  G    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           +EDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of MC11g0047.1 vs. NCBI nr
Match: XP_004145545.1 (HMG1/2-like protein [Cucumis sativus] >KAE8649961.1 hypothetical protein Csa_012361 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 1.92e-76
Identity = 136/148 (91.89%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRG-KKAGKDPNKPKRPASAFFVFMEEFRKKF 88
           MKGGKS+SESKKAD KL+VKKGAA   A +G KKAGKDPNKPKRPASAFFVFMEEFRKKF
Sbjct: 1   MKGGKSRSESKKADTKLAVKKGAA---AKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKF 60

Query: 89  NEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 148
           NEENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA
Sbjct: 61  NEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120

Query: 149 AEEDESEKSMSEVNDDEDGDEGSEEEED 175
           AEEDESEKSMSEVNDDEDGDEGSEE++D
Sbjct: 121 AEEDESEKSMSEVNDDEDGDEGSEEDDD 145

[Close]

BLAST of MC11g0047.1 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (596), Expect = 6.06e-76
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           EEDESEKS+SEVNDDE+GDEGSEEE+DDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of MC11g0047.1 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 3.16e-87
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           EEDESEKSMSEVNDDEDGDEGSEEEEDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

[Close]

BLAST of MC11g0047.1 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 2.03e-78
Identity = 138/149 (92.62%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKAD KL+VKKGAA  G    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           +EDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of MC11g0047.1 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 2.94e-76
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           EEDESEKS+SEVNDDE+GDEGSEEE+DDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of MC11g0047.1 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 6.12e-76
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDD 176
           EEDESEKS+SEVNDDE+GDEGSEEE+DD
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of MC11g0047.1 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 219 bits (558), Expect = 1.24e-70
Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKGGKSK         L+VKKGAA  G    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSK---------LAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 177
           +EDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 138

[Close]

BLAST of MC11g0047.1 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42
Identity = 103/149 (69.13%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of MC11g0047.1 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-42
Identity = 102/148 (68.92%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDD 177
           E++ES+KS+SEVND++D ++GSEEE+DD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of MC11g0047.1 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41
Identity = 100/147 (68.03%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEED 176
           E++ES+KS+SEVND++D ++GSEE++D
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEDDD 142

[Close]

BLAST of MC11g0047.1 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 161.4 bits (407), Expect = 6.7e-40
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPAKG----AKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 178
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of MC11g0047.1 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 157.5 bits (397), Expect = 9.7e-39
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 29  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 88
           MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPAKG----AKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 89  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 148
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 149 EEDESEKSMSEVNDDEDGDEGSEE 173
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 136

The following BLAST results are available for this feature:

BLAST of MC11g0047.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	7.2e-47	75.00	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
O49596	2.0e-41	69.13	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P93047	9.5e-39	66.44	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	1.5e-36	64.43	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P27347	1.7e-35	62.66	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of MC11g0047.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142588.1	6.53e-87	100.00	HMG1/2-like protein [Momordica charantia]	[more]
XP_038896795.1	1.91e-79	91.95	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_008452973.1	4.19e-78	92.62	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_004145545.1	1.92e-76	91.89	HMG1/2-like protein [Cucumis sativus] >KAE8649961.1 hypothetical protein Csa_012...	[more]
XP_022936925.1	6.06e-76	89.26	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]

BLAST of MC11g0047.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNM1	3.16e-87	100.00	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A1S3BW96	2.03e-78	92.62	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1FF34	2.94e-76	89.26	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A6J1IF57	6.12e-76	89.19	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A5A7VCD7	1.24e-70	87.25	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of MC11g0047.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20693.1	1.4e-42	69.13	high mobility group B2	[more]
AT1G20693.3	2.5e-42	68.92	high mobility group B2	[more]
AT1G20693.2	1.2e-41	68.03	high mobility group B2	[more]
AT1G20696.1	6.7e-40	66.44	high mobility group B3	[more]
AT1G20696.3	9.7e-39	65.97	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 29..176
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 69..135 e-value: 2.96421E-15 score: 64.9565
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 68..139 e-value: 1.6E-26 score: 104.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 69..138 e-value: 4.4E-24 score: 84.7
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 69..138 score: 20.742489
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 52..161 e-value: 1.9E-26 score: 94.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 58..143
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 29..176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0047	MC11g0047	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0047.1-utr3	MC11g0047.1-utr3-MC11:330724..330929	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0047.1-cds	MC11g0047.1-cds-MC11:330930..330947	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:331030..331122	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:331209..331289	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:331370..331414	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:331531..331588	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:331882..331989	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:332159..332211	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:332213..332213	CDS
MC11g0047.1-cds	MC11g0047.1-cds-MC11:332310..332386	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0047.1	MC11g0047.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin