MC11g0017.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0017.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	splicing factor U2af small subunit B-like
Location	MC11: 167750 .. 169270 (+)
Sequence length	1521
RNA-Seq Expression	MC11g0017.1
Synteny	MC11g0017.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCACAACCACCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAATTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGACTGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGACTTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAGTGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCCGTGACGTTGGTATTTTTCTCTTTGGTAATTCTTCTGGCCTCTCCGTCATTTAATTATGTACCTTACACCAGAGTACTTTCTGCCCGAATAGGAAGTAGAAATCTTTTCTAGACAAAACGATGGATATCATATCAAGTAGCCTTTTGGTTATGTGCAATTTGTGTTTCTAGTTGATGTTGTCGGATATGATTTCTCACTATTTCTATCTCCGGTTAATCATTCATATACTCTAACTTTTAACTTGCGCTCCTTCTGTTTATAACGAGGATTACTCCCATTTTACTTTTCATGAATTTCAGTTTCTCTTATTTGAATTTCTGACCCAGGCAGGAATAAACTAGGAAAGTCGTTCGTAAACTTGCTATTTAACCAAATTCTAATTATTATGTCAGTGGGCTAGAAAGAACTTGGGATGTTGTCCAACTTATGGGAATAAGTTACATTTGAGTACACTTGTGAATTGGTGAGATTATTGTTTGATAAATAGTAGTCAGGTGCTTTTTGATTGAAAGTGTGAAAGAAATAAGGTTTATTGTGTGCTAGTCATTTCTCATGTATTTATTATGTATATATAAAAACTGTGTATGGCCTTCAGAGAGAATAATCTTCGGGCCTACGAATTCCTTAGATGTTTCGCAGCTATCAGAAAAACTAAATGGCTGTAGATGACAACTATTCGGAATCTAGAGAAGTTGAA

mRNA sequence

ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCACAACCACCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAATTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGACTGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGACTTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAGTGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCCGTGACGTTGGTATTTTTCTCTTTGGTAATTCTTCTGGCCTCTCCGTCATTTAATTATGTACCTTACACCAGAGTACTTTCTGCCCGAATAGGAAGTAGAAATCTTTTCTAGACAAAACGATGGATATCATATCAAGTAGCCTTTTGGTTATGTGCAATTTGTGTTTCTAGTTGATGTTGTCGGATATGATTTCTCACTATTTCTATCTCCGGTTAATCATTCATATACTCTAACTTTTAACTTGCGCTCCTTCTGTTTATAACGAGGATTACTCCCATTTTACTTTTCATGAATTTCAGTTTCTCTTATTTGAATTTCTGACCCAGGCAGGAATAAACTAGGAAAGTCGTTCGTAAACTTGCTATTTAACCAAATTCTAATTATTATGTCAGTGGGCTAGAAAGAACTTGGGATGTTGTCCAACTTATGGGAATAAGTTACATTTGAGTACACTTGTGAATTGGTGAGATTATTGTTTGATAAATAGTAGTCAGGTGCTTTTTGATTGAAAGTGTGAAAGAAATAAGGTTTATTGTGTGCTAGTCATTTCTCATGTATTTATTATGTATATATAAAAACTGTGTATGGCCTTCAGAGAGAATAATCTTCGGGCCTACGAATTCCTTAGATGTTTCGCAGCTATCAGAAAAACTAAATGGCTGTAGATGACAACTATTCGGAATCTAGAGAAGTTGAA

Coding sequence (CDS)

ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCACAACCACCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAATTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGACTGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGACTTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAGTGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCCGTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP

Homology

[Close]

BLAST of MC11g0017.1 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 9.9e-128
Identity = 239/281 (85.05%), Postives = 257/281 (91.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYRR-SRSRSRSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYD 240
           RRKLFGRY R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 274
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of MC11g0017.1 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-126
Identity = 239/291 (82.13%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---R 240
           RRKLFGRY R YR   RSRSRSRS+SPRN++D DRR+   R+F    RDR+F  +G   R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK 275
           S ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEK 291

[Close]

BLAST of MC11g0017.1 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.6e-117
Identity = 227/307 (73.94%), Postives = 248/307 (80.78%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNR-----KDYDRRERD-------------------- 240
           RRKL+G     RRS  RSRS SPR+R     +D  RRERD                    
Sbjct: 181 RRKLYGGRS--RRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDG 240

Query: 241 FRDRD-FRGNG-----RSKERYDRYDRDGGRRRHGS-PRRSRSPVREGSEERRARIEQWN 276
           +R  D +RG G         RYDRYD DGGRRRHGS PRR+RSPVRE SEERRA+IEQWN
Sbjct: 241 YRGGDSYRGGGGGGRRGGGSRYDRYD-DGGRRRHGSPPRRARSPVRESSEERRAKIEQWN 300

[Close]

BLAST of MC11g0017.1 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 5.8e-112
Identity = 215/288 (74.65%), Postives = 234/288 (81.25%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSP---RNRKDYDRRERD-FRDRD----------FRGNG- 240
           R++LFG     RRS S  RS SP     R+DYDRR     RD D          +RG   
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240

Query: 241 RSKERY-DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNRERE 273
           RS ER+   YD DG RRRH S  R+RSPVR+GSEERRA+IEQWNRERE
Sbjct: 241 RSSERHRSSYDSDGSRRRHRS--RTRSPVRDGSEERRAQIEQWNRERE 286

[Close]

BLAST of MC11g0017.1 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.8e-66
Identity = 127/242 (52.48%), Postives = 168/242 (69.42%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLNVCDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240
           LRR+L+GR R   RSRSRSR    R+      R+R        G GR ++R    DR+  
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRS------RDRGRGGGGGGGGGRERDRRRSRDRERS 236

Query: 241 RR 242
            R
Sbjct: 241 GR 236

[Close]

BLAST of MC11g0017.1 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 545 bits (1404), Expect = 1.97e-195
Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240
           RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEKP 275
           RRHGSPRRSRSPVREGSEERRARIEQWNREREEKP
Sbjct: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEKP 275

[Close]

BLAST of MC11g0017.1 vs. NCBI nr
Match: XP_022941119.1 (splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941120.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941121.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022981902.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022981903.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022981905.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >KAG7037979.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 528 bits (1360), Expect = 1.04e-188
Identity = 268/275 (97.45%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 275

[Close]

BLAST of MC11g0017.1 vs. NCBI nr
Match: XP_023525325.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525326.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525327.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526 bits (1356), Expect = 4.24e-188
Identity = 267/275 (97.09%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRKDYDRRERD+RDRD RGNGRSKER DR+DRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRFDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 275

[Close]

BLAST of MC11g0017.1 vs. NCBI nr
Match: XP_023521110.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG6591187.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024073.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523 bits (1348), Expect = 6.77e-187
Identity = 264/274 (96.35%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240
           RRKLFGR+RGYRRSRSRSRSLSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGR
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           RRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Sbjct: 241 RRHGSPRRSRSPVREGSVERRARIEQWNREREEK 274

[Close]

BLAST of MC11g0017.1 vs. NCBI nr
Match: XP_022936161.1 (splicing factor U2af small subunit B-like [Cucurbita moschata])

HSP 1 Score: 518 bits (1335), Expect = 6.98e-185
Identity = 264/276 (95.65%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRS--LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDG 240
           RRKLFGR+RGYRRSRSRSRS  LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDG
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG 240

Query: 241 GRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           GRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Sbjct: 241 GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEK 276

[Close]

BLAST of MC11g0017.1 vs. ExPASy TrEMBL
Match: A0A6J1CN17 (splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC111012985 PE=4 SV=1)

HSP 1 Score: 545 bits (1404), Expect = 9.52e-196
Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240
           RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEKP 275
           RRHGSPRRSRSPVREGSEERRARIEQWNREREEKP
Sbjct: 241 RRHGSPRRSRSPVREGSEERRARIEQWNREREEKP 275

[Close]

BLAST of MC11g0017.1 vs. ExPASy TrEMBL
Match: A0A6J1IV82 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111480904 PE=4 SV=1)

HSP 1 Score: 528 bits (1360), Expect = 5.04e-189
Identity = 268/275 (97.45%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 275

[Close]

BLAST of MC11g0017.1 vs. ExPASy TrEMBL
Match: A0A6J1FSM7 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111446512 PE=4 SV=1)

HSP 1 Score: 528 bits (1360), Expect = 5.04e-189
Identity = 268/275 (97.45%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 275

[Close]

BLAST of MC11g0017.1 vs. ExPASy TrEMBL
Match: A0A6J1F6R3 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111442843 PE=4 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 3.38e-185
Identity = 264/276 (95.65%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRS--LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDG 240
           RRKLFGR+RGYRRSRSRSRS  LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDG
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDG 240

Query: 241 GRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274
           GRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Sbjct: 241 GRRRHGSPRRSRSPVREGSVERRARIEQWNREREEK 276

[Close]

BLAST of MC11g0017.1 vs. ExPASy TrEMBL
Match: A0A5A7VFL1 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00280 PE=4 SV=1)

HSP 1 Score: 509 bits (1312), Expect = 1.04e-181
Identity = 263/278 (94.60%), Postives = 269/278 (96.76%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240
           RRKLFGRYRGYR SRSRSRSLSPRNRK+YDRRERD+R+R++RGNGRSKER+DR   DGGR
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDR---DGGR 240

Query: 241 RRHGSPRRSRS--PV--REGSEERRARIEQWNREREEK 274
           RRHGSPRRSRS  PV  REGSEERRARIEQWNREREEK
Sbjct: 241 RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 275

[Close]

BLAST of MC11g0017.1 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 457.6 bits (1176), Expect = 7.0e-129
Identity = 239/281 (85.05%), Postives = 257/281 (91.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYRR-SRSRSRSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYD 240
           RRKLFGRY R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 274
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of MC11g0017.1 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 457.6 bits (1176), Expect = 7.0e-129
Identity = 239/281 (85.05%), Postives = 257/281 (91.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRY-RGYRR-SRSRSRSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYD 240
           RRKLFGRY R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 274
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of MC11g0017.1 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-127
Identity = 239/291 (82.13%), Postives = 259/291 (89.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---R 240
           RRKLFGRY R YR   RSRSRSRS+SPRN++D DRR+   R+F    RDR+F  +G   R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK 275
           S ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEK 291

[Close]

BLAST of MC11g0017.1 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 347.1 bits (889), Expect = 1.3e-95
Identity = 190/241 (78.84%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG 110
           MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIG
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
           NVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDR 230
           MHVK++ ++LRRKLFGRY R YR   RSRSRSRS+SPRN++D DRR+   R+F    RDR
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 DFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREE 275
           +F  +G   RS ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREE
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREE 240

[Close]

BLAST of MC11g0017.1 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-28
Identity = 98/304 (32.24%), Postives = 152/304 (50.00%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H +P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+ +  VC N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR--- 188
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 -------------RKLFG----RYRGYRRSRSRSRS---LSPRNRKDYDRRER------- 248
                          LFG    ++  +  S S + S   LS  + +   RR R       
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 ------DFRDRDFRGNGRSKERYDRYDRDGGRRRHG--SPRRSRSPVREGSEERRARIEQ 271
                  +R R + G+ +   R D+  R       G  SP R  S  RE  +ERR   + 
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTREDKLRRHAENCHDGDDSPSRDGSLEREMYKERRYAKDT 536

The following BLAST results are available for this feature:

BLAST of MC11g0017.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	9.9e-128	85.05	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	1.4e-126	82.13	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	1.6e-117	73.94	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZQW8	5.8e-112	74.65	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	4.8e-66	52.48	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of MC11g0017.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142994.1	1.97e-195	99.64	splicing factor U2af small subunit B-like [Momordica charantia]	[more]
XP_022941119.1	1.04e-188	97.45	splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941120.1 s...	[more]
XP_023525325.1	4.24e-188	97.09	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02352...	[more]
XP_023521110.1	6.77e-187	96.35	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG65911...	[more]
XP_022936161.1	6.98e-185	95.65	splicing factor U2af small subunit B-like [Cucurbita moschata]	[more]

BLAST of MC11g0017.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN17	9.52e-196	99.64	splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1IV82	5.04e-189	97.45	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FSM7	5.04e-189	97.45	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1F6R3	3.38e-185	95.65	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5A7VFL1	1.04e-181	94.60	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of MC11g0017.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	7.0e-129	85.05	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	7.0e-129	85.05	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	1.0e-127	82.13	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	1.3e-95	78.84	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	2.4e-28	32.24	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 37..57 score: 60.82 coord: 18..37 score: 85.68 coord: 165..177 score: 63.29 coord: 75..90 score: 54.26 coord: 103..125 score: 65.61 coord: 130..154 score: 63.64
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..274
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 73..142 e-value: 1.5E-4 score: 31.1
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.0087 score: 25.3 coord: 13..39 e-value: 0.0068 score: 25.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 14..38 e-value: 6.9E-7 score: 29.0 coord: 150..174 e-value: 1.4E-4 score: 21.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 11.413015
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 12.821381
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 1.2E-7 score: 31.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.05946
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 8.1E-31 score: 108.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..242
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..274
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 8.75416E-61 score: 186.031
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0017	MC11g0017	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0017.1-cds	MC11g0017.1-cds-MC11:167750..168577	CDS

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0017.1-utr3	MC11g0017.1-utr3-MC11:168578..169270	utr3

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0017.1	MC11g0017.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0089701	U2AF complex
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding