MC11g0016.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0016.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CP12 domain-containing protein
Location	MC11: 163041 .. 163253 (-)
Sequence length	213
RNA-Seq Expression	MC11g0016.1
Synteny	MC11g0016.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAGCATCTGACGGAAATGATTGAGAAGAAGGTGATGGAAGCAAAGGAGGTGTGCGAGGGGGACGAGACCTCAGATGAGTGCAAGGTGGCGTGGGACCTGGTGGAGGAGCTCAGCCAAGCCAAAGCCCATTTCCTACACAAACTTCAGAACCAAGATCCACTAGAGTACTTCTGTCGAGACAATCCCGACCTTGACGAGTGTCAAATTTAC

mRNA sequence

GAGAAGCATCTGACGGAAATGATTGAGAAGAAGGTGATGGAAGCAAAGGAGGTGTGCGAGGGGGACGAGACCTCAGATGAGTGCAAGGTGGCGTGGGACCTGGTGGAGGAGCTCAGCCAAGCCAAAGCCCATTTCCTACACAAACTTCAGAACCAAGATCCACTAGAGTACTTCTGTCGAGACAATCCCGACCTTGACGAGTGTCAAATTTAC

Coding sequence (CDS)

GAGAAGCATCTGACGGAAATGATTGAGAAGAAGGTGATGGAAGCAAAGGAGGTGTGCGAGGGGGACGAGACCTCAGATGAGTGCAAGGTGGCGTGGGACCTGGTGGAGGAGCTCAGCCAAGCCAAAGCCCATTTCCTACACAAACTTCAGAACCAAGATCCACTAGAGTACTTCTGTCGAGACAATCCCGACCTTGACGAGTGTCAAATTTAC

Protein sequence

EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCRDNPDLDECQIY

Homology

[Close]

BLAST of MC11g0016.1 vs. ExPASy Swiss-Prot
Match: Q9C9K2 (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.7e-19
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQ--NQDPLEYF 60
           E+ L+EMIE+KV EA EVCE +E S+EC+VAWD VEE+SQA+A    KL+  NQDPLE F
Sbjct: 60  EEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESF 119

Query: 61  CRDNPDLDECQIY 72
           C++NP+ DEC+IY
Sbjct: 120 CQENPETDECRIY 132

[Close]

BLAST of MC11g0016.1 vs. ExPASy Swiss-Prot
Match: O22914 (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-13
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQ--NQDPLEYF 60
           E  ++E +EK + EAKE C  D  S EC  AWD VEELS A +H   K +    DPLE +
Sbjct: 50  EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEY 109

Query: 61  CRDNPDLDECQIY 72
           C DNP+ DEC+ Y
Sbjct: 110 CNDNPETDECRTY 122

[Close]

BLAST of MC11g0016.1 vs. ExPASy Swiss-Prot
Match: Q9LZP9 (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-12
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHF--LHKLQNQDPLEYF 60
           E  +++++EK + EA+E C GD  S EC  AWD VEELS A +H     K    DPLE +
Sbjct: 57  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEY 116

Query: 61  CRDNPDLDECQIY 72
           C+DNP+ +EC+ Y
Sbjct: 117 CKDNPETNECRTY 129

[Close]

BLAST of MC11g0016.1 vs. ExPASy Swiss-Prot
Match: A6Q0K5 (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CP12 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 9.1e-09
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 4   LTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQ----DPLEYFC 63
           L + ++  V EA++ C    TS +C VAWD VEELS A +H    ++      DPLE FC
Sbjct: 35  LNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFC 94

Query: 64  RDNPDLDECQIY 72
           +D PD DEC++Y
Sbjct: 95  KDAPDADECRVY 105

[Close]

BLAST of MC11g0016.1 vs. NCBI nr
Match: XP_022157376.1 (calvin cycle protein CP12-3, chloroplastic [Momordica charantia])

HSP 1 Score: 149 bits (375), Expect = 1.80e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR 60
           EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR
Sbjct: 53  EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR 112

Query: 61  DNPDLDECQIY 71
           DNPDLDECQIY
Sbjct: 113 DNPDLDECQIY 123

[Close]

BLAST of MC11g0016.1 vs. NCBI nr
Match: XP_022982015.1 (calvin cycle protein CP12-3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 124 bits (312), Expect = 1.08e-34
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETS--DECKVAWDLVEELSQAKAHFLHKLQNQDPLEYF 60
           EK LTEMIEKKVMEAKEVC+GDETS  DECKVAWD VEE+SQAKAH L KLQ QDPLEYF
Sbjct: 65  EKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYF 124

Query: 61  CRDNPDLDECQIY 71
           CRDNP LDECQIY
Sbjct: 125 CRDNPQLDECQIY 137

[Close]

BLAST of MC11g0016.1 vs. NCBI nr
Match: KAG7037981.1 (Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (312), Expect = 1.15e-34
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETS--DECKVAWDLVEELSQAKAHFLHKLQNQDPLEYF 60
           EK LTEMIEKKVMEAKEVC+GDETS  DECKVAWD VEE+SQAKAH L KLQ QDPLEYF
Sbjct: 67  EKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYF 126

Query: 61  CRDNPDLDECQIY 71
           CRDNP LDECQIY
Sbjct: 127 CRDNPQLDECQIY 139

[Close]

BLAST of MC11g0016.1 vs. NCBI nr
Match: XP_023525595.1 (calvin cycle protein CP12-3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (312), Expect = 1.15e-34
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETS--DECKVAWDLVEELSQAKAHFLHKLQNQDPLEYF 60
           EK LTEMIEKKVMEAKEVC+GDETS  DECKVAWD VEE+SQAKAH L KLQ QDPLEYF
Sbjct: 67  EKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYF 126

Query: 61  CRDNPDLDECQIY 71
           CRDNP LDECQIY
Sbjct: 127 CRDNPQLDECQIY 139

[Close]

BLAST of MC11g0016.1 vs. NCBI nr
Match: KAG6608664.1 (Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (312), Expect = 1.21e-34
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETS--DECKVAWDLVEELSQAKAHFLHKLQNQDPLEYF 60
           EK LTEMIEKKVMEAKEVC+GDETS  DECKVAWD VEE+SQAKAH L KLQ QDPLEYF
Sbjct: 69  EKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYF 128

Query: 61  CRDNPDLDECQIY 71
           CRDNP LDECQIY
Sbjct: 129 CRDNPQLDECQIY 141

[Close]

BLAST of MC11g0016.1 vs. ExPASy TrEMBL
Match: A0A6J1DXW2 (calvin cycle protein CP12-3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024065 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 8.73e-45
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR 60
           EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR
Sbjct: 53  EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR 112

Query: 61  DNPDLDECQIY 71
           DNPDLDECQIY
Sbjct: 113 DNPDLDECQIY 123

[Close]

BLAST of MC11g0016.1 vs. ExPASy TrEMBL
Match: A0A6J1J1E6 (calvin cycle protein CP12-3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480996 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.23e-35
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETS--DECKVAWDLVEELSQAKAHFLHKLQNQDPLEYF 60
           EK LTEMIEKKVMEAKEVC+GDETS  DECKVAWD VEE+SQAKAH L KLQ QDPLEYF
Sbjct: 65  EKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYF 124

Query: 61  CRDNPDLDECQIY 71
           CRDNP LDECQIY
Sbjct: 125 CRDNPQLDECQIY 137

[Close]

BLAST of MC11g0016.1 vs. ExPASy TrEMBL
Match: A0A6J1FK63 (calvin cycle protein CP12-3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446478 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.88e-35
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETS--DECKVAWDLVEELSQAKAHFLHKLQNQDPLEYF 60
           EK LTEMIEKKVMEAKEVC+GDETS  DECKVAWD VEE+SQAKAH L KLQ QDPLEYF
Sbjct: 69  EKLLTEMIEKKVMEAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYF 128

Query: 61  CRDNPDLDECQIY 71
           CRDNP LDECQIY
Sbjct: 129 CRDNPQLDECQIY 141

[Close]

BLAST of MC11g0016.1 vs. ExPASy TrEMBL
Match: B9R8V0 (CP12 domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1602310 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 6.62e-34
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR 60
           EKHLTEMIEKKVMEAKEVCEGD+TSDECKVAWD VEE+SQAKA F  KL+ +DPLEYFC+
Sbjct: 70  EKHLTEMIEKKVMEAKEVCEGDQTSDECKVAWDEVEEVSQAKADFRLKLEKRDPLEYFCQ 129

Query: 61  DNPDLDECQIY 71
           DNP+ DEC++Y
Sbjct: 130 DNPETDECRVY 140

[Close]

BLAST of MC11g0016.1 vs. ExPASy TrEMBL
Match: A0A2C9VX76 (CP12 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_05G129800 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 9.68e-34
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCR 60
           EKHLTEMIEKK++EAKEVCEGD+TSDECKVAWD VEE+SQAKA F  KL+ QDPLEYFC+
Sbjct: 71  EKHLTEMIEKKIIEAKEVCEGDQTSDECKVAWDEVEEVSQAKADFRLKLEKQDPLEYFCQ 130

Query: 61  DNPDLDECQIY 71
           DNP+ DEC++Y
Sbjct: 131 DNPETDECRVY 141

[Close]

BLAST of MC11g0016.1 vs. TAIR 10
Match: AT1G76560.1 (CP12 domain-containing protein 3 )

HSP 1 Score: 93.6 bits (231), Expect = 6.9e-20
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQ--NQDPLEYF 60
           E+ L+EMIE+KV EA EVCE +E S+EC+VAWD VEE+SQA+A    KL+  NQDPLE F
Sbjct: 60  EEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESF 119

Query: 61  CRDNPDLDECQIY 72
           C++NP+ DEC+IY
Sbjct: 120 CQENPETDECRIY 132

[Close]

BLAST of MC11g0016.1 vs. TAIR 10
Match: AT2G47400.1 (CP12 domain-containing protein 1 )

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-14
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHFLHKLQ--NQDPLEYF 60
           E  ++E +EK + EAKE C  D  S EC  AWD VEELS A +H   K +    DPLE +
Sbjct: 50  EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEY 109

Query: 61  CRDNPDLDECQIY 72
           C DNP+ DEC+ Y
Sbjct: 110 CNDNPETDECRTY 122

[Close]

BLAST of MC11g0016.1 vs. TAIR 10
Match: AT3G62410.1 (CP12 domain-containing protein 2 )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1   EKHLTEMIEKKVMEAKEVCEGDETSDECKVAWDLVEELSQAKAHF--LHKLQNQDPLEYF 60
           E  +++++EK + EA+E C GD  S EC  AWD VEELS A +H     K    DPLE +
Sbjct: 57  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEY 116

Query: 61  CRDNPDLDECQIY 72
           C+DNP+ +EC+ Y
Sbjct: 117 CKDNPETNECRTY 129

The following BLAST results are available for this feature:

BLAST of MC11g0016.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9K2	9.7e-19	63.01	Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
O22914	8.0e-13	49.32	Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
Q9LZP9	2.3e-12	46.58	Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
A6Q0K5	9.1e-09	44.44	Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]

BLAST of MC11g0016.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157376.1	1.80e-44	100.00	calvin cycle protein CP12-3, chloroplastic [Momordica charantia]	[more]
XP_022982015.1	1.08e-34	86.30	calvin cycle protein CP12-3, chloroplastic [Cucurbita maxima]	[more]
KAG7037981.1	1.15e-34	86.30	Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
XP_023525595.1	1.15e-34	86.30	calvin cycle protein CP12-3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6608664.1	1.21e-34	86.30	Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]

BLAST of MC11g0016.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXW2	8.73e-45	100.00	calvin cycle protein CP12-3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1J1E6	5.23e-35	86.30	calvin cycle protein CP12-3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FK63	5.88e-35	86.30	calvin cycle protein CP12-3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
B9R8V0	6.62e-34	80.28	CP12 domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1602310 PE=4 ...	[more]
A0A2C9VX76	9.68e-34	78.87	CP12 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_05G129800 P...	[more]

BLAST of MC11g0016.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76560.1	6.9e-20	63.01	CP12 domain-containing protein 3	[more]
AT2G47400.1	5.7e-14	49.32	CP12 domain-containing protein 1	[more]
AT3G62410.1	1.6e-13	46.58	CP12 domain-containing protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 4..71 e-value: 1.1E-17 score: 74.8
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 4..71 e-value: 6.8E-24 score: 84.4
IPR039314	Calvin cycle protein CP12-like	PANTHER	PTHR33921	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 1..71
None	No IPR available	PANTHER	PTHR33921:SF16	CALVIN CYCLE PROTEIN CP12-3, CHLOROPLASTIC	coord: 1..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g0016	MC11g0016	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g0016.1-cds	MC11g0016.1-cds-MC11:163041..163253	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g0016.1	MC11g0016.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080153	negative regulation of reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast