MC10g1315.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC10g1315.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC10: 16653066 .. 16653395 (-)
Sequence length	330
RNA-Seq Expression	MC10g1315.1
Synteny	MC10g1315.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTGAACTGCCTCTCGTGCCAGCTGCTGCAGAGATCGGACTCGGAGAGAGAACAGAGATGTTACTCCGACGGCTTATCCTCGTCGGAGCGCAGCTGGTCCGGCAACCTCTCCCTCAGGCCGCCCTGCGAGGACCGCCCCGGTGTTCCGCTTCCGACGGCGGCCGCCAAGGGACACCGCCGCCTCCACACCACCGGCGCCGTCTCCTTCGGCAAGGAGCCCAGGCTCGTCAGAAGCTCCGGCATGAGGAGGGATTGGAGCTTCGAGGATCTTAGATCCATCGCTCAACAGCGAACCCAAAACCAACCCCAACCCTCCGCCAATTCC

mRNA sequence

ATGAGTCTGAACTGCCTCTCGTGCCAGCTGCTGCAGAGATCGGACTCGGAGAGAGAACAGAGATGTTACTCCGACGGCTTATCCTCGTCGGAGCGCAGCTGGTCCGGCAACCTCTCCCTCAGGCCGCCCTGCGAGGACCGCCCCGGTGTTCCGCTTCCGACGGCGGCCGCCAAGGGACACCGCCGCCTCCACACCACCGGCGCCGTCTCCTTCGGCAAGGAGCCCAGGCTCGTCAGAAGCTCCGGCATGAGGAGGGATTGGAGCTTCGAGGATCTTAGATCCATCGCTCAACAGCGAACCCAAAACCAACCCCAACCCTCCGCCAATTCC

Coding sequence (CDS)

ATGAGTCTGAACTGCCTCTCGTGCCAGCTGCTGCAGAGATCGGACTCGGAGAGAGAACAGAGATGTTACTCCGACGGCTTATCCTCGTCGGAGCGCAGCTGGTCCGGCAACCTCTCCCTCAGGCCGCCCTGCGAGGACCGCCCCGGTGTTCCGCTTCCGACGGCGGCCGCCAAGGGACACCGCCGCCTCCACACCACCGGCGCCGTCTCCTTCGGCAAGGAGCCCAGGCTCGTCAGAAGCTCCGGCATGAGGAGGGATTGGAGCTTCGAGGATCTTAGATCCATCGCTCAACAGCGAACCCAAAACCAACCCCAACCCTCCGCCAATTCC

Protein sequence

MSLNCLSCQLLQRSDSEREQRCYSDGLSSSERSWSGNLSLRPPCEDRPGVPLPTAAAKGHRRLHTTGAVSFGKEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQPSANS

Homology

[Close]

BLAST of MC10g1315.1 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114 bits (286), Expect = 2.37e-30
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 1   MSLNCLSCQL-LQRSDSERE---QRCYSDGLSSSERSWSGNLSLRPPC-EDRPGVPLPT- 60
           MSLNCLSCQL LQRSDS+++      ++D   S +RSWSGNLS RPP  ++  G  + T 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  --AAAKGHRRLHTTGAVSFG---KEPRLVRSSGMRRDWSFEDLRSIAQQR 99
              A  GHRRLH+TGAV+FG   KEPRL+RS+GMRRDWSFEDLR+I +++
Sbjct: 61  NKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEK 110

[Close]

BLAST of MC10g1315.1 vs. NCBI nr
Match: XP_022952265.1 (uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothetical protein SDJN03_09915, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028271.1 hypothetical protein SDJN02_09452, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (284), Expect = 4.76e-30
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MSLNCLSCQL-LQRSDSERE---QRCYSDGLSSSERSWSGNLSLRPPC-EDRPGVPLPT- 60
           MSLNCLSCQL LQRSDS+++      ++D   S +RSWSGNLS RPP  ++  G  + T 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  --AAAKGHRRLHTTGAVSFG---KEPRLVRSSGMRRDWSFEDLRSI 95
              A  GHRRLH+TGAV+FG   KEPRL+RS+GMRRDWSFEDLR+I
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAI 106

[Close]

BLAST of MC10g1315.1 vs. NCBI nr
Match: XP_023007608.1 (uncharacterized protein LOC111500186 [Cucurbita maxima])

HSP 1 Score: 113 bits (282), Expect = 7.82e-30
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPP--DRPKKEALRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 99
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of MC10g1315.1 vs. NCBI nr
Match: KAG6577703.1 (hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015746.1 hypothetical protein SDJN02_23384, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (280), Expect = 1.58e-29
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPP--DRPKKEPLRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 99
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of MC10g1315.1 vs. NCBI nr
Match: XP_023553065.1 (uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112 bits (280), Expect = 1.58e-29
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSVQIEPSGRSWSGNLSFRPP--DRPKKEPLRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 99
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of MC10g1315.1 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.31e-30
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MSLNCLSCQL-LQRSDSERE---QRCYSDGLSSSERSWSGNLSLRPPC-EDRPGVPLPT- 60
           MSLNCLSCQL LQRSDS+++      ++D   S +RSWSGNLS RPP  ++  G  + T 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  --AAAKGHRRLHTTGAVSFG---KEPRLVRSSGMRRDWSFEDLRSI 95
              A  GHRRLH+TGAV+FG   KEPRL+RS+GMRRDWSFEDLR+I
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAI 106

[Close]

BLAST of MC10g1315.1 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 3.79e-30
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPP--DRPKKEALRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 99
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of MC10g1315.1 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 4.01e-26
Identity = 70/125 (56.00%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCY-SDGLSSSERSWSGNLSLRPPC--------ED 60
           MSLNCLSCQ+LQR+DSER      Q  Y SD  +SSERSWSGNL LRP            
Sbjct: 1   MSLNCLSCQILQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGGGRG 60

Query: 61  RPGVPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQ 110
             G+     A  GHRR     AVSFG KEPRL+RSSGMRRDWSFEDLR+I +++     Q
Sbjct: 61  FRGMADNKVAPIGHRR-----AVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEK-----Q 115

[Close]

BLAST of MC10g1315.1 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 2.68e-25
Identity = 69/117 (58.97%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCY-SDGLSSSERSWSGNLSLRPPCEDRPGVPLPT 60
           MSLNCLSCQLLQR+DSER      Q  Y SD    S+RSWSGNLSLR   ++R GV    
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSLR---QNRGGVFRGM 60

Query: 61  AAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQPSANS 110
           A  K     H   AVSFG KEPRLVRSSGMRRDWSFEDLR+I +++     +PS NS
Sbjct: 61  ADNKVAPVCHRR-AVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEK-----EPSPNS 108

[Close]

BLAST of MC10g1315.1 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 2.68e-25
Identity = 69/117 (58.97%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSERE-----QRCY-SDGLSSSERSWSGNLSLRPPCEDRPGVPLPT 60
           MSLNCLSCQLLQR+DSER      Q  Y SD    S+RSWSGNLSLR   ++R GV    
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSLR---QNRGGVFRGM 60

Query: 61  AAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQPSANS 110
           A  K     H   AVSFG KEPRLVRSSGMRRDWSFEDLR+I +++     +PS NS
Sbjct: 61  ADNKVAPVCHRR-AVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEK-----EPSPNS 108

[Close]

BLAST of MC10g1315.1 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 1  MSLNCLSCQLLQRSDSEREQRCYSDGLSSSERSWSGNLSLRPPCEDRPGVPLPTAAAKGH 60
          MSLNCL+C +LQR+DS+R+     D   SS +      +      +R  +P+     KGH
Sbjct: 1  MSLNCLACHILQRTDSDRDMGSRKD---SSFKENFATSAFEKMVRNRSSLPVVRRVNKGH 60

Query: 61 RRLHTTGAVSFGK--EPRLVRSSGMRRDWSFEDLRSIAQQ 99
          RRL++   + +G+  EP+LVRSSG+RRDWSFEDL+    Q
Sbjct: 61 RRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97

[Close]

BLAST of MC10g1315.1 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 45/120 (37.50%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRSDSEREQRCYSDGLSSSE----------------RSWSGNLSLRPPC 60
           MSLNCLSCQ L R+DS ++      G    E                R+WSGNLS R   
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYE 60

Query: 61  E-DRPGVPLPTAAAKGHRRLHT--TGAVSFG--------KEPRLVRSSGMRRDWSFEDLR 94
           +  RPG  L     K  +  H   +G V           ++P+LVRS+G+RR+WSFE+LR
Sbjct: 61  KIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENLR 120

The following BLAST results are available for this feature:

BLAST of MC10g1315.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g1315.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539506.1	2.37e-30	58.18	uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo]	[more]
XP_022952265.1	4.76e-30	60.38	uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothet...	[more]
XP_023007608.1	7.82e-30	57.66	uncharacterized protein LOC111500186 [Cucurbita maxima]	[more]
KAG6577703.1	1.58e-29	57.66	hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023553065.1	1.58e-29	57.66	uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC10g1315.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL99	2.31e-30	60.38	uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1L834	3.79e-30	57.66	uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186...	[more]
A0A0A0L198	4.01e-26	56.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1	[more]
A0A5A7UAS3	2.68e-25	58.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJN6	2.68e-25	58.97	uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=...	[more]

BLAST of MC10g1315.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35215.1	1.0e-14	43.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G46770.1	2.5e-08	37.50	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..110
None	No IPR available	PANTHER	PTHR36019:SF3	PLANT/PROTEIN	coord: 1..100
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC10g1315	MC10g1315	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC10g1315.1-cds	MC10g1315.1-cds-MC10:16653066..16653395	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC10g1315.1	MC10g1315.1-protein	polypeptide