MC09g_new0449.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0449.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein of unknown function (DUF1262)
Location	MC09: 21485869 .. 21486126 (-)
Sequence length	258
RNA-Seq Expression	MC09g_new0449.1
Synteny	MC09g_new0449.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTGACGAGGCCACTTTCGCTGTACAGAAATTGCTCGCCTTCGGCGGCGCCGGCGCCGGAGCCGGAGGGCCCAAACACAGGAGTTCTGGTGATGGACGAAGATGAAGTGGTGGATTTCAGATGCTGTTTTGGATTGGTCAACACAAAGTATGTGAAGAGGGAGGTGGAGGCGCCGCCGTTCCCTCAGAACAAGATGCTGCAGCTTTCCTATTCGTATTCCACAAATGGAGGCAAGGACAATCACACCGATTAA

mRNA sequence

ATGTACGTGACGAGGCCACTTTCGCTGTACAGAAATTGCTCGCCTTCGGCGGCGCCGGCGCCGGAGCCGGAGGGCCCAAACACAGGAGTTCTGGTGATGGACGAAGATGAAGTGGTGGATTTCAGATGCTGTTTTGGATTGGTCAACACAAAGTATGTGAAGAGGGAGGTGGAGGCGCCGCCGTTCCCTCAGAACAAGATGCTGCAGCTTTCCTATTCGTATTCCACAAATGGAGGCAAGGACAATCACACCGATTAA

Coding sequence (CDS)

ATGTACGTGACGAGGCCACTTTCGCTGTACAGAAATTGCTCGCCTTCGGCGGCGCCGGCGCCGGAGCCGGAGGGCCCAAACACAGGAGTTCTGGTGATGGACGAAGATGAAGTGGTGGATTTCAGATGCTGTTTTGGATTGGTCAACACAAAGTATGTGAAGAGGGAGGTGGAGGCGCCGCCGTTCCCTCAGAACAAGATGCTGCAGCTTTCCTATTCGTATTCCACAAATGGAGGCAAGGACAATCACACCGATTAA

Protein sequence

MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAPPFPQNKMLQLSYSYSTNGGKDNHTD

Homology

[Close]

BLAST of MC09g_new0449.1 vs. NCBI nr
Match: XP_022149024.1 (uncharacterized protein LOC111017544 [Momordica charantia])

HSP 1 Score: 167 bits (423), Expect = 1.99e-49
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MYVTRPLSLYRNC-SPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEA 60
          MYVTRPLS+YRN   PSAAPAPEPEGPNTGVLVMDEDE+VDFRCCFGLVNTKYVKR VEA
Sbjct: 1  MYVTRPLSMYRNYYPPSAAPAPEPEGPNTGVLVMDEDEMVDFRCCFGLVNTKYVKRAVEA 60

Query: 61 PPFPQNKMLQLSYSYSTNGGKDNHTD 85
          PPFPQNKMLQLSYSYSTNGGKDNHTD
Sbjct: 61 PPFPQNKMLQLSYSYSTNGGKDNHTD 86

[Close]

BLAST of MC09g_new0449.1 vs. NCBI nr
Match: XP_022149086.1 (uncharacterized protein LOC111017584 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.78e-16
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MYVTRPLSLYRN-CSPSAAPAPEP--EGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREV 60
          MYVTRPLS+YRN  + SAAP P    EGPNTGVLV+ EDE  + R  FGL+  K VK   
Sbjct: 1  MYVTRPLSMYRNEGATSAAPVPAALVEGPNTGVLVI-EDEAAESRWLFGLLKRKSVK--- 60

Query: 61 EAPPFPQNKMLQLSYSYSTNGGKDNHTD 85
           APPFPQNK+++L Y+   N G+  HTD
Sbjct: 61 -APPFPQNKIMELRYTI--NSGEHQHTD 81

[Close]

BLAST of MC09g_new0449.1 vs. NCBI nr
Match: KAB5544682.1 (hypothetical protein DKX38_012794 [Salix brachista])

HSP 1 Score: 78.2 bits (191), Expect = 1.28e-14
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTRPLSLY+  +PSA  +P PEGPN+G+L++ +DE     CCFGL  +     +VE  
Sbjct: 1  MYVTRPLSLYKT-NPSALSSPPPEGPNSGILII-QDEEAQPTCCFGLFKSD----QVEDL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHTD 85
          PFPQNK L++ Y+  T+GG D   D
Sbjct: 61 PFPQNKNLRVRYT--TSGGNDRPND 77

[Close]

BLAST of MC09g_new0449.1 vs. NCBI nr
Match: XP_011001167.1 (PREDICTED: uncharacterized protein LOC105108532 [Populus euphratica])

HSP 1 Score: 78.2 bits (191), Expect = 1.35e-14
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTRPLS+Y+  +PSA   P PEGPN+G+L++ +DE  +  CCFGL    +   +VE  
Sbjct: 1  MYVTRPLSMYKR-NPSALSLPPPEGPNSGILII-QDEEAEPTCCFGL----FTSDQVEDL 60

Query: 61 PFPQNKMLQLSYSYSTNGG------KDNHTD 85
          PFPQNK L++ Y+  TNGG      +D HT+
Sbjct: 61 PFPQNKNLKVRYT--TNGGAANNRHRDTHTN 83

[Close]

BLAST of MC09g_new0449.1 vs. NCBI nr
Match: KAG7013069.1 (hypothetical protein SDJN02_25825, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 1.97e-14
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTRPLSLYRN SPS+  +  PEGPN+G+LV+ ++E  + R C GL  TK   +E+   
Sbjct: 1  MYVTRPLSLYRN-SPSSLSSAPPEGPNSGILVIQDEEPAETRWCCGLFKTKESVKEL--- 60

Query: 61 PFPQNKMLQLSYS 73
          PFPQNK+L+L+++
Sbjct: 61 PFPQNKILRLTHA 69

[Close]

BLAST of MC09g_new0449.1 vs. ExPASy TrEMBL
Match: A0A6J1D5S8 (uncharacterized protein LOC111017544 OS=Momordica charantia OX=3673 GN=LOC111017544 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 9.63e-50
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MYVTRPLSLYRNC-SPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEA 60
          MYVTRPLS+YRN   PSAAPAPEPEGPNTGVLVMDEDE+VDFRCCFGLVNTKYVKR VEA
Sbjct: 1  MYVTRPLSMYRNYYPPSAAPAPEPEGPNTGVLVMDEDEMVDFRCCFGLVNTKYVKRAVEA 60

Query: 61 PPFPQNKMLQLSYSYSTNGGKDNHTD 85
          PPFPQNKMLQLSYSYSTNGGKDNHTD
Sbjct: 61 PPFPQNKMLQLSYSYSTNGGKDNHTD 86

[Close]

BLAST of MC09g_new0449.1 vs. ExPASy TrEMBL
Match: A0A6J1D7B1 (uncharacterized protein LOC111017584 OS=Momordica charantia OX=3673 GN=LOC111017584 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.35e-16
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MYVTRPLSLYRN-CSPSAAPAPEP--EGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREV 60
          MYVTRPLS+YRN  + SAAP P    EGPNTGVLV+ EDE  + R  FGL+  K VK   
Sbjct: 1  MYVTRPLSMYRNEGATSAAPVPAALVEGPNTGVLVI-EDEAAESRWLFGLLKRKSVK--- 60

Query: 61 EAPPFPQNKMLQLSYSYSTNGGKDNHTD 85
           APPFPQNK+++L Y+   N G+  HTD
Sbjct: 61 -APPFPQNKIMELRYTI--NSGEHQHTD 81

[Close]

BLAST of MC09g_new0449.1 vs. ExPASy TrEMBL
Match: A0A5N5LQ01 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_012794 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.20e-15
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTRPLSLY+  +PSA  +P PEGPN+G+L++ +DE     CCFGL  +     +VE  
Sbjct: 1  MYVTRPLSLYKT-NPSALSSPPPEGPNSGILII-QDEEAQPTCCFGLFKSD----QVEDL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHTD 85
          PFPQNK L++ Y+  T+GG D   D
Sbjct: 61 PFPQNKNLRVRYT--TSGGNDRPND 77

[Close]

BLAST of MC09g_new0449.1 vs. ExPASy TrEMBL
Match: A0A6N2M8A5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS268751 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.04e-14
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTRPLSLY+  +PSA  +P PEGPN+G+L++ +DE     CCFGL  +     +VE  
Sbjct: 1  MYVTRPLSLYKR-NPSALSSPPPEGPNSGILII-QDEEAQPTCCFGLFKSD----QVEDL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHT 84
          PFPQNK L++SY+ S    + N T
Sbjct: 61 PFPQNKNLRVSYTTSRGTDRPNDT 78

[Close]

BLAST of MC09g_new0449.1 vs. ExPASy TrEMBL
Match: A0A6N2LRT3 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS268751 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.05e-14
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTRPLSLY+  +PSA  +P PEGPN+G+L++ +DE     CCFGL  +     +VE  
Sbjct: 1  MYVTRPLSLYKR-NPSALSSPPPEGPNSGILII-QDEEAQPTCCFGLFKSD----QVEDL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHT 84
          PFPQNK L++SY+ S    + N T
Sbjct: 61 PFPQNKNLRVSYTTSRGTDRPNDT 78

[Close]

BLAST of MC09g_new0449.1 vs. TAIR 10
Match: AT1G13550.1 (Protein of unknown function (DUF1262) )

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTR LS YR  +PS    P PEGPN+GVLV+ ++E +   CCFGL N  +++      
Sbjct: 1  MYVTRRLSEYRK-NPSELKKPPPEGPNSGVLVIQDEESLT-TCCFGLCNEIFLR----GL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDN 83
          PFPQN  L +      +GG++N
Sbjct: 61 PFPQNAALTVR---RDDGGQNN 73

[Close]

BLAST of MC09g_new0449.1 vs. TAIR 10
Match: AT1G13480.1 (Protein of unknown function (DUF1262) )

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-08
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTR LS Y+   PS      PEGPN+G++V+ +DE     CCFG       +  ++  
Sbjct: 1  MYVTRRLSEYQK-KPSELKLLPPEGPNSGIMVI-QDEESQATCCFG----SCYEGRLKGL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHT 85
          PFPQN  L  +Y   T+GG ++ T
Sbjct: 61 PFPQNVKLNAAY---TSGGGEHQT 75

[Close]

BLAST of MC09g_new0449.1 vs. TAIR 10
Match: AT1G13510.1 (Protein of unknown function (DUF1262) )

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTR LS Y+  +P+    P PEGPN+G+LV+ +       CCFGL     V   +   
Sbjct: 1  MYVTRCLSEYQR-NPAELRQPPPEGPNSGILVIQDQHSQTRPCCFGL--CLVVDSYLSGL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHT 85
          P PQN  L   +    N G+D+ T
Sbjct: 61 PLPQNLKLAARF----NAGEDDAT 77

[Close]

BLAST of MC09g_new0449.1 vs. TAIR 10
Match: AT1G13520.1 (Protein of unknown function (DUF1262) )

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVTR LS Y+  S S      PEGPN+GVLV+ +DE     CCFG         E++  
Sbjct: 1  MYVTRHLSEYQRNS-SDLTRSLPEGPNSGVLVI-QDEESKPTCCFG----NCYDGELKGL 60

Query: 61 PFPQNKMLQLSYSYSTNGGKDNHTD 86
          PFPQN  L ++Y   T   + ++ D
Sbjct: 61 PFPQNAKLTVTYRTGTGNDRRSYHD 79

[Close]

BLAST of MC09g_new0449.1 vs. TAIR 10
Match: AT1G13530.1 (Protein of unknown function (DUF1262) )

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-06
Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 1  MYVTRPLSLYRNCSPSAAPAPEPEGPNTGVLVMDEDEVVDFRCCFGLVNTKYVKREVEAP 60
          MYVT+ LS Y+  +PS       EGPN+GVLV+ +DE     CCFG    K    ++   
Sbjct: 1  MYVTKRLSEYQR-NPSELTFLPTEGPNSGVLVI-QDEESQPTCCFG----KCFGCDLNGL 60

Query: 61 PFPQNKMLQLSY 73
          PFPQN  + + Y
Sbjct: 61 PFPQNTRVTVKY 66

The following BLAST results are available for this feature:

BLAST of MC09g_new0449.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0449.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149024.1	1.99e-49	93.02	uncharacterized protein LOC111017544 [Momordica charantia]	[more]
XP_022149086.1	2.78e-16	56.82	uncharacterized protein LOC111017584 [Momordica charantia]	[more]
KAB5544682.1	1.28e-14	50.59	hypothetical protein DKX38_012794 [Salix brachista]	[more]
XP_011001167.1	1.35e-14	48.35	PREDICTED: uncharacterized protein LOC105108532 [Populus euphratica]	[more]
KAG7013069.1	1.97e-14	53.42	hypothetical protein SDJN02_25825, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC09g_new0449.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5S8	9.63e-50	93.02	uncharacterized protein LOC111017544 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1D7B1	1.35e-16	56.82	uncharacterized protein LOC111017584 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5N5LQ01	6.20e-15	50.59	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_012794 PE=4 SV=1	[more]
A0A6N2M8A5	1.04e-14	50.00	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS268751 PE=4 SV=...	[more]
A0A6N2LRT3	1.05e-14	50.00	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS268751 PE=4 SV=...	[more]

BLAST of MC09g_new0449.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13550.1	2.0e-10	45.12	Protein of unknown function (DUF1262)	[more]
AT1G13480.1	3.3e-08	40.48	Protein of unknown function (DUF1262)	[more]
AT1G13510.1	7.3e-08	39.29	Protein of unknown function (DUF1262)	[more]
AT1G13520.1	7.3e-08	41.18	Protein of unknown function (DUF1262)	[more]
AT1G13530.1	3.0e-06	41.67	Protein of unknown function (DUF1262)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010683	Protein of unknown function DUF1262	PFAM	PF06880	DUF1262	coord: 24..75 e-value: 1.3E-9 score: 38.4
None	No IPR available	PANTHER	PTHR31050:SF3	OS08G0413200 PROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR31050	OS08G0413200 PROTEIN	coord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC09g_new0449	MC09g_new0449	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC09g_new0449.1-cds	MC09g_new0449.1-cds-MC09:21485869..21486126	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC09g_new0449.1	MC09g_new0449.1-protein	polypeptide