MC09g_new0444.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0444.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 21405461 .. 21407015 (-)
Sequence length	321
RNA-Seq Expression	MC09g_new0444.1
Synteny	MC09g_new0444.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCAAACACATCAGACGACAAGGCCATGAATGGCTTCCTCAAGTTCTCTGGAACCCATGTGGTCAGCCCATTCGCAAAGTTTGAGGTCGAAGAAGCTAAGGACAAAGGGACCAAGAAGGGTCTTGTTCATATCAGGTGAGTTTTTGGAGAAAGTTTATTTTAGTAAAAACATTTGTTTGATATTTTGCTTCCCAATCTCCACGCTTATTTAACCTGCTCACATCTAGATGATCATAATATATGAAGTTTCATTATCCATTTATTGAAAGCAAAATAATGGTAAAGGCTAAAATGGTAATTGTTTCCATTAACAATATTCAACTAATAGTCATGAACTGCACAAAAAAACACTCAGCAAGAGAACATAGCATAATCGGCCATGGACCATGGAGAATCAATCGAAGAAAACATTTCTCGAACACATTATCACAAGATCGCCGCCTGAACAGACCTCCAAAACCAAAACAAATAAAGTCAACAAAATTCTACCCTTTTGATAACAACCCAGAATAAAATATCCCTTAATCAGAAAAACCAACCTTTAATCGAGTTCGCACAACACAGATTTTGATAGAAGAAATGCAAGAACAAGGGAAGAACATGGGTTTGTATACAAGACTTACCACGGATGAAGAGCTTCGGCAAGGTGAGAGTTGAATCGAGACGAAGGGTCGTTCACAGAGAGCGTCGCCGCTGCTGGAGATGGTCGCTGCCGCCGGAGATGGTCACAGAGAGAGAGAGAGCTGGGGGAGGGGGGGTGGTCGTGGAGTCGCGAACTGAAGGGTCGAGGGACAGAGGCGTATGTTACAGAGGAAGACGGGTTTAAAGGCAACGGAACTGAACCGAACCGAACCAAACCGGTCCGGTCCGTTTTTCGGTTTGGTTCGGTTCCTTTCACCCCAGTGAAATGTTTGGCTATTTACTGCTGCCTTTTTTTGTTGATGATGCATAGTGCTGACAGGAGTGTGTTGAAAAATTGCGTGTATTCTAGCAGAATAAGATCATCTGTTGAATTGTGAGTAAAGATGAAGGAAGAACATGATAAATTATTGTCACAATTGGCTAATAGAGAAGTAACACGACTGTGCAGTTTTTGAATGATTTTTCTTTCATAGGTCAAGAAAAAAAAAATTGTTGCTTATTAGAGTGACCAAAAAGAGGAAGACTTCAACGGTTAATTTGTTTAACTGATAAAATCGAGAAAGTTTGTAACTTTTACATGAAAAAGTTCCACAGCCCTCTTCCAATGACTTCAAGAGCTACTAAGAAAATACCAGTTATCCTTGAATCAACTTATCCCAAAGTTGAATGGAGAACAATTTGCAGCCATGCAAGCCTAAGAATAAAGTTCAAGCCATGCAGAATCCACTCCACCATAGGACCTAAAACAAGGGAAGATTAGTTAACTCCTAGATTGTGTACTTGACAAGACACCTATAATCTTCCTATATTGTACAAAGTATTGGGTTCTATTTTTATCTTTTCAGGTGTTGATTGAGAGAATATTGCTTTGCCTTGCTAAAACTAAGCCAATGGAAGAGGAAATTTGA

mRNA sequence

ATGCAAGCAAACACATCAGACGACAAGGCCATGAATGGCTTCCTCAAGTTCTCTGGAACCCATGTGGTCAGCCCATTCGCAAAGTTTGAGGTCGAAGAAGCTAAGGACAAAGGGACCAAGAAGGGTCTTGTTCATATCAGAGAGCGTCGCCGCTGCTGGAGATGGTCGCTGCCGCCGGAGATGGTCACAGAGAGAGAGAGAGCTGGGGGAGGGGGGGTGGTCGTGGAGTCGCGAACTGAAGGGTCGAGGGACAGAGGCGTGTTGATTGAGAGAATATTGCTTTGCCTTGCTAAAACTAAGCCAATGGAAGAGGAAATTTGA

Coding sequence (CDS)

ATGCAAGCAAACACATCAGACGACAAGGCCATGAATGGCTTCCTCAAGTTCTCTGGAACCCATGTGGTCAGCCCATTCGCAAAGTTTGAGGTCGAAGAAGCTAAGGACAAAGGGACCAAGAAGGGTCTTGTTCATATCAGAGAGCGTCGCCGCTGCTGGAGATGGTCGCTGCCGCCGGAGATGGTCACAGAGAGAGAGAGAGCTGGGGGAGGGGGGGTGGTCGTGGAGTCGCGAACTGAAGGGTCGAGGGACAGAGGCGTGTTGATTGAGAGAATATTGCTTTGCCTTGCTAAAACTAAGCCAATGGAAGAGGAAATTTGA

Protein sequence

MQANTSDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIRERRRCWRWSLPPEMVTERERAGGGGVVVESRTEGSRDRGVLIERILLCLAKTKPMEEEI

Homology

[Close]

BLAST of MC09g_new0444.1 vs. NCBI nr
Match: XP_022157625.1 (uncharacterized protein LOC111024286 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 8.04e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 7  DDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          DDK MNGFLKFSGTHVVSPFAKFEVEEAKDK TKKGLVHIR
Sbjct: 32 DDKVMNGFLKFSGTHVVSPFAKFEVEEAKDKATKKGLVHIR 72

[Close]

BLAST of MC09g_new0444.1 vs. NCBI nr
Match: XP_004140598.3 (uncharacterized protein LOC101212067 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.32e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          +DDK M+GFLKFSGTHVVSPFAKFEVE+AK+K + KGLVH+R
Sbjct: 29 NDDKTMHGFLKFSGTHVVSPFAKFEVEKAKEK-SNKGLVHVR 69

[Close]

BLAST of MC09g_new0444.1 vs. NCBI nr
Match: XP_022992244.1 (uncharacterized protein LOC111488623 [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 3.33e-11
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR---ERRRCWRWS 56
          ++DK M+GFLKFSGTHVV+PFAKFEVE+AK+K + KGLVHIR     + C RWS
Sbjct: 31 NNDKIMHGFLKFSGTHVVNPFAKFEVEKAKEK-SNKGLVHIRCCYNNKYCVRWS 83

[Close]

BLAST of MC09g_new0444.1 vs. NCBI nr
Match: XP_038875952.1 (uncharacterized protein LOC120068303 [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 6.20e-11
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR--ERRRCW-RWSLPPEMV 62
          +DDK M+GFLKF+GTHVVSPFAKFEVE+AK+K + KGLVHIR     + W RWS   + +
Sbjct: 29 NDDKIMHGFLKFNGTHVVSPFAKFEVEKAKEK-SNKGLVHIRCCYNNKYWVRWSAKSKYI 87

[Close]

BLAST of MC09g_new0444.1 vs. NCBI nr
Match: XP_022953531.1 (uncharacterized protein LOC111456051 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 8.47e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          +DDK M+GFLKFSGTHVV+PFAKFEVE+AK+K + KGLVHIR
Sbjct: 31 NDDKIMHGFLKFSGTHVVNPFAKFEVEKAKEK-SNKGLVHIR 71

[Close]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL
Match: A0A6J1DTL6 (uncharacterized protein LOC111024286 OS=Momordica charantia OX=3673 GN=LOC111024286 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.89e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 7  DDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          DDK MNGFLKFSGTHVVSPFAKFEVEEAKDK TKKGLVHIR
Sbjct: 32 DDKVMNGFLKFSGTHVVSPFAKFEVEEAKDKATKKGLVHIR 72

[Close]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL
Match: A0A0A0KBV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G085110 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.61e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          +DDK M+GFLKFSGTHVVSPFAKFEVE+AK+K + KGLVH+R
Sbjct: 29 NDDKTMHGFLKFSGTHVVSPFAKFEVEKAKEK-SNKGLVHVR 69

[Close]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL
Match: A0A6J1JX13 (uncharacterized protein LOC111488623 OS=Cucurbita maxima OX=3661 GN=LOC111488623 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.61e-11
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR---ERRRCWRWS 56
          ++DK M+GFLKFSGTHVV+PFAKFEVE+AK+K + KGLVHIR     + C RWS
Sbjct: 31 NNDKIMHGFLKFSGTHVVNPFAKFEVEKAKEK-SNKGLVHIRCCYNNKYCVRWS 83

[Close]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL
Match: A0A6J1GN79 (uncharacterized protein LOC111456051 OS=Cucurbita moschata OX=3662 GN=LOC111456051 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.10e-11
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          +DDK M+GFLKFSGTHVV+PFAKFEVE+AK+K + KGLVHIR
Sbjct: 31 NDDKIMHGFLKFSGTHVVNPFAKFEVEKAKEK-SNKGLVHIR 71

[Close]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL
Match: A0A0A0KEX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084600 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.64e-11
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 6  SDDKAMNGFLKFSGTHVVSPFAKFEVEEAKDKGTKKGLVHIR 47
          +DDK M+GFL FSGTHVVSPFAKFEVE+AK+K + KGLVHIR
Sbjct: 29 NDDKTMHGFLTFSGTHVVSPFAKFEVEKAKEK-SNKGLVHIR 69

The following BLAST results are available for this feature:

BLAST of MC09g_new0444.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0444.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157625.1	8.04e-16	95.12	uncharacterized protein LOC111024286 [Momordica charantia]	[more]
XP_004140598.3	3.32e-11	78.57	uncharacterized protein LOC101212067 [Cucumis sativus]	[more]
XP_022992244.1	3.33e-11	66.67	uncharacterized protein LOC111488623 [Cucurbita maxima]	[more]
XP_038875952.1	6.20e-11	61.67	uncharacterized protein LOC120068303 [Benincasa hispida]	[more]
XP_022953531.1	8.47e-11	78.57	uncharacterized protein LOC111456051 [Cucurbita moschata]	[more]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTL6	3.89e-16	95.12	uncharacterized protein LOC111024286 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A0A0KBV4	1.61e-11	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G085110 PE=3 SV=1	[more]
A0A6J1JX13	1.61e-11	66.67	uncharacterized protein LOC111488623 OS=Cucurbita maxima OX=3661 GN=LOC111488623...	[more]
A0A6J1GN79	4.10e-11	78.57	uncharacterized protein LOC111456051 OS=Cucurbita moschata OX=3662 GN=LOC1114560...	[more]
A0A0A0KEX2	7.64e-11	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084600 PE=3 SV=1	[more]

BLAST of MC09g_new0444.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.80.10.50		coord: 1..84 e-value: 6.9E-9 score: 37.5
IPR036242	Agglutinin domain superfamily	SUPERFAMILY	50382	Agglutinin	coord: 7..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC09g_new0444	MC09g_new0444	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC09g_new0444.1-cds	MC09g_new0444.1-cds-MC09:21405461..21405523	CDS
MC09g_new0444.1-cds	MC09g_new0444.1-cds-MC09:21406212..21406329	CDS
MC09g_new0444.1-cds	MC09g_new0444.1-cds-MC09:21406876..21407015	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC09g_new0444.1	MC09g_new0444.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region