MC09g1243.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1243.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Low temperature and salt responsive protein family
Location	MC09: 18496805 .. 18497062 (-)
Sequence length	162
RNA-Seq Expression	MC09g1243.1
Synteny	MC09g1243.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGGCTTAACTCAAGTTCTTCACTTCTTTTTTCAAATCATTTTGCAATTTTGCTCATCAGGTTTTTGCTTGTGTTTTGAATTTGGAAGTGCAGGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA

mRNA sequence

ATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA

Coding sequence (CDS)

ATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA

Protein sequence

MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

Homology

[Close]

BLAST of MC09g1243.1 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MC09g1243.1 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-18
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          M S TF+E+ILAI+LPPVGVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of MC09g1243.1 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-18
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          MGS T +E+ILAI+LPPVGVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of MC09g1243.1 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-18
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          MGS T +E+ILAI+LPPVGVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of MC09g1243.1 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.9e-16
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of MC09g1243.1 vs. NCBI nr
Match: XP_022139042.1 (low temperature-induced protein lt101.2 [Momordica charantia])

HSP 1 Score: 107 bits (268), Expect = 2.37e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. NCBI nr
Match: XP_026412058.1 (low temperature-induced protein lt101.2 [Papaver somniferum])

HSP 1 Score: 107 bits (267), Expect = 3.37e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPIGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. NCBI nr
Match: XP_026427599.1 (low temperature-induced protein lt101.2-like [Papaver somniferum])

HSP 1 Score: 107 bits (266), Expect = 4.79e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEI+LAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEILLAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. NCBI nr
Match: XP_022941664.1 (low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022999688.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_022999696.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_023554157.1 low temperature-induced protein lt101.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106 bits (265), Expect = 6.81e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. NCBI nr
Match: NP_565897.1 (Low temperature and salt responsive protein family [Arabidopsis thaliana] >XP_019101250.1 PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Camelina sativa] >XP_020883024.1 salt stress-induced hydrophobic peptide ESI3 [Arabidopsis lyrata subsp. lyrata] >KAG7569699.1 Proteolipid membrane potential modulator [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7574143.1 Proteolipid membrane potential modulator [Arabidopsis suecica] >AAK97701.1 unknown protein [Arabidopsis thaliana] >AAL31117.1 At2g38901/At2g38901 [Arabidopsis thaliana] >AAM15078.1 Expressed protein [Arabidopsis thaliana])

HSP 1 Score: 106 bits (265), Expect = 6.81e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. ExPASy TrEMBL
Match: A0A6J1CCW8 (low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111010062 PE=3 SV=1)

HSP 1 Score: 107 bits (268), Expect = 1.15e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.30e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. ExPASy TrEMBL
Match: Q941D7 (At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.30e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. ExPASy TrEMBL
Match: A0A178W1U1 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g35820 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.30e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.30e-29
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-24
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MC09g1243.1 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MC09g1243.1 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 84.0 bits (206), Expect = 4.2e-17
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of MC09g1243.1 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-14
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGS  F+E++ AI +PPVGVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of MC09g1243.1 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4  ETFVEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 54
          E F EI++AILLPP+GV L+ G C VEF ICL+LTILGYIPGIIYA+YV+V
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

The following BLAST results are available for this feature:

BLAST of MC09g1243.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNQ7	2.8e-18	82.69	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9ARD5	3.7e-18	83.02	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	8.2e-18	84.91	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	8.2e-18	84.91	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]
Q9ZNS6	5.9e-16	69.23	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]

BLAST of MC09g1243.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139042.1	2.37e-29	100.00	low temperature-induced protein lt101.2 [Momordica charantia]	[more]
XP_026412058.1	3.37e-29	98.15	low temperature-induced protein lt101.2 [Papaver somniferum]	[more]
XP_026427599.1	4.79e-29	98.15	low temperature-induced protein lt101.2-like [Papaver somniferum]	[more]
XP_022941664.1	6.81e-29	98.15	low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low...	[more]
NP_565897.1	6.81e-29	98.15	Low temperature and salt responsive protein family [Arabidopsis thaliana] >XP_01...	[more]

BLAST of MC09g1243.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCW8	1.15e-29	100.00	low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KKG3	3.30e-29	98.15	low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
Q941D7	3.30e-29	98.15	At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1	[more]
A0A178W1U1	3.30e-29	98.15	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g...	[more]
A0A6J1FUC5	3.30e-29	98.15	low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MC09g1243.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	7.8e-24	98.15	Low temperature and salt responsive protein family	[more]
AT3G05880.1	2.0e-19	82.69	Low temperature and salt responsive protein family	[more]
AT3G05890.1	4.2e-17	69.23	Low temperature and salt responsive protein family	[more]
AT1G57550.1	1.5e-14	69.23	Low temperature and salt responsive protein family	[more]
AT4G30650.1	1.4e-12	72.55	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 6..53 e-value: 4.3E-21 score: 74.9
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..53
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 10..25
None	No IPR available	PANTHER	PTHR21659:SF96	BNAA04G22250D PROTEIN	coord: 1..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC09g1243	MC09g1243	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC09g1243.1-cds	MC09g1243.1-cds-MC09:18496805..18496885	CDS
MC09g1243.1-cds	MC09g1243.1-cds-MC09:18496982..18497062	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC09g1243.1	MC09g1243.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane