MC08g2546.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2546.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosomal protein L28-1-like
Location	MC08: 34183690 .. 34186555 (-)
Sequence length	948
RNA-Seq Expression	MC08g2546.1
Synteny	MC08g2546.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGTTACTGAGTCGCTCTTCGACTAGTTACAGCACAGGTGCGATCTTCGATCCTTGAGATCTCATTTACACCTTCCGTTTCATCCTCTTCAATCAGATTTCTCCCCCTTTTCGGATTTCAATTTTCTATATTCATATCAACTGGCATCGTCCGATCCTTTCTTTTATTGCTGATATCCGTTATTAATCTTCGAAGTATATTTTTCTTTGTTGCTTCTTATTCATCCGATTTGTTGTTCTCATAGTGTTCTTCGAACCCTTTTGTAGATGGCGAATGTTCCGGGGCAGTTGGTATGGGAAATCGTAAAGAAGAACAACTCCTTCCTTGTTAAGGAGTTTGGCAGAGGCAATGCTGGTGTGCAATTCAGCAAAGAGCCCAACAATCTCTACAACCTCAACTCTTACAAGCATTCCGGTATGATTATACATTATAATCTACTGCTCTCCTTTTTACTTGTTTAGTATAATCGTGTAAGCTTGAGGAAAATATGAGGTAGTTTCATTTTCCAACATTATCATGATATATCTCCAATTGCTTACCACTTCGACCAGTTTAACCCCGTAAACGATTTGTGTTTTGTGTTTTGTACTTTTTTCTTACCGGAATATTTATTCGATCTTGTTTTAGTTCTTTCAGTGTGTCGGGTTTATTGATTATTTGCATATGGAATTTTCTTTGTGGGTTCTTTTAGGCTTGGCAAACCGTAAGACAGTAACCATCCAGCCCGGAGGCAAGGATTTGTCAGTGCTGCTCGCGACAACAAAGGCAAAGAAACAGAACAAACCCGCCAGTTTGCTCCACAGATCGGTCATGAGAAAGGAATTTCCACGTATGGCAAAGGCTGTCATTAATCAGGTACCTAGCAACTTCAGTTTTTTAGTTCATTCTCGTTCAGTTGGAATTGATTCTTGGCAAATAAGTTCAGAACCGGCCACTTGTTAATTTTCCCTGTATTTATCTCTTATTGCCCGTGCTTAGTTAGCATCATCAAGGAATTATTCTGTTAGATATTCTGCATTGTGTTAGTTTTGAATATTTGGTTACTAATCGCCATGGACATATTTTCCGTCTCCTTGTGTGTGTCCAAAGGCTTTTCTGCTTCAATAGTTTCTTTAGAGATTGGAATTTAACTGAATGTGCAATGTTGCAGTGATGAGAAGCTAACATGTAAGAAGGGCTGCTTTTGTAGCAGCATTTTCAATGAGATCTATTTGTTACGCTTGGCTTCTGAGCACACAATTTTTCATGGTCTATATTTCATTAACTTTTCAATAATTGCCCGTGCTTAGTTATTGTCATCGAGGAATTATTCTGTTAGGTATTCTGCATTGTGTTTGTTTTGAATATTTGGTTACAATTCTCTTCTCATCGCCATGTTTGTGGGCTTTTATATCTGTCTCCTTGGGTGTCCAAAGGCTTTTCGGCTTCAATAGTTTTCTTAGAGATTGGAATTGAACTGAATGTGCAATGTTGCAGTGATGAGAAGCTAACATGTAAGAAGGGCCGCTTTTGTAGCAGCATCTTCAATGAGATCTATTTGTTACGCTTGGCTTCTGAGCACACAATTTTCCTCGGTCTATATTTCATTAATTTTTTCAATAATTTACTGTGCTTAGTTAGTGTCAACAATGAATTATTCTGTTAGAAAATATGCATTGTGTCCGCTTTGAAACTTTGGTTACAACTCTCTTCTCATTGCCATGTTTGTGGGCATATTTTCTGTCTCGTTGTGTGTCCCAATGCTTTTCTGTTTTAATAGTTTTCCTTGAGATTGGAATTGAGTGGAATGTGAAATGTTGCAGTGATGAGAAGCTAACACGTAAGAAGTACTGCTTTTGTAGCAGCATCTTCGATGAAATATATTTGTTACGCTTGGCTTCTGAGCACACAATTTTCCATGGCCTATGCTATTAGGCTGTTGAAGATGTTGTGGTTGATACCGAGAATATTTTGTCTATTTTTTAAACTGATTGCCTCATTCCTTTTGTTTTCATTTTCTATATTGGGAACAGAATATTGCATAGACAGTTGAGTATAATTATTTTTAGTGTTAAATTTATTGTGCTTATCAATGTTTGAACAATTGAAATGAATTTCATTGTTCTTTTTTTATCTAACTTAATGATGGTGCATATGGGTTTTGCTTCCAAGTGCCCCTTCTGGATGTGCCTGAGAGTTATGTCATTGCTTTGCTTCTTATTATCATGTCATATTTATTGCTTCTAGGTGCTTTTTACAGTAATGGGTTATACAATAGCCTGATTGGTCATACCCCTAATCCGTAGCTTAGTGCTGTCTTTCCATTACATTCTTGTGTAGTATAATATCAAGCTTTTGTTAATATATGCTCAAAAGTTCTACGGTAGGGGAGCTTGCTTAAATATTAATGTGATGTGATGATGAACTGCTAATATGTAGTTTGCTGCTCTGTTTGAAACTGATTATATATTGAGATCGAATTGATTCAGTTAGGAGTGTACTTATTGAATTATGCAGGTGGCTGACAATTACTACCGCCCGGACTTGAAGAAGGCTGCCCTCGCAAAGCTTAGCGTAGTACACAGGAGTCTCAAGGTTGCCAAGTCAGGTGTGAAGAAGAGGAACAGGCAGGCACTCAAGACCCGCGGTAGGAAGTGAGCTTACCCTTTCTTAAAGAGGACCTTCTCCGGGCTTTTCTTTAATCTCTCTGGTTTGCACCCACAATAGGTTCACTTGAAATTTATGATTATGATGACCCCATTTCAATTTTGGATTACATTTCAGTACATCCCCTTTGGAATTTTGTTATTTTTAATGTAGTTTTTAAAGGGTTAAAATATCCAATATTTGATTGATACCGAGATGAATTTTGTTACATGGTTTAT

mRNA sequence

CTCTGTTACTGAGTCGCTCTTCGACTAGTTACAGCACAGGTGCGATCTTCGATCCTTGAGATCTCATTTACACCTTCCGTTTCATCCTCTTCAATCAGATTTCTCCCCCTTTTCGGATTTCAATTTTCTATATTCATATCAACTGGCATCGTCCGATCCTTTCTTTTATTGCTGATATCCGTTATTAATCTTCGAAGTATATTTTTCTTTGTTGCTTCTTATTCATCCGATTTGTTGTTCTCATAGTGTTCTTCGAACCCTTTTGTAGATGGCGAATGTTCCGGGGCAGTTGGTATGGGAAATCGTAAAGAAGAACAACTCCTTCCTTGTTAAGGAGTTTGGCAGAGGCAATGCTGGTGTGCAATTCAGCAAAGAGCCCAACAATCTCTACAACCTCAACTCTTACAAGCATTCCGGCTTGGCAAACCGTAAGACAGTAACCATCCAGCCCGGAGGCAAGGATTTGTCAGTGCTGCTCGCGACAACAAAGGCAAAGAAACAGAACAAACCCGCCAGTTTGCTCCACAGATCGGTCATGAGAAAGGAATTTCCACGTATGGCAAAGGCTGTCATTAATCAGGTGGCTGACAATTACTACCGCCCGGACTTGAAGAAGGCTGCCCTCGCAAAGCTTAGCGTAGTACACAGGAGTCTCAAGGTTGCCAAGTCAGGTGTGAAGAAGAGGAACAGGCAGGCACTCAAGACCCGCGGTAGGAAGTGAGCTTACCCTTTCTTAAAGAGGACCTTCTCCGGGCTTTTCTTTAATCTCTCTGGTTTGCACCCACAATAGGTTCACTTGAAATTTATGATTATGATGACCCCATTTCAATTTTGGATTACATTTCAGTACATCCCCTTTGGAATTTTGTTATTTTTAATGTAGTTTTTAAAGGGTTAAAATATCCAATATTTGATTGATACCGAGATGAATTTTGTTACATGGTTTAT

Coding sequence (CDS)

ATGGCGAATGTTCCGGGGCAGTTGGTATGGGAAATCGTAAAGAAGAACAACTCCTTCCTTGTTAAGGAGTTTGGCAGAGGCAATGCTGGTGTGCAATTCAGCAAAGAGCCCAACAATCTCTACAACCTCAACTCTTACAAGCATTCCGGCTTGGCAAACCGTAAGACAGTAACCATCCAGCCCGGAGGCAAGGATTTGTCAGTGCTGCTCGCGACAACAAAGGCAAAGAAACAGAACAAACCCGCCAGTTTGCTCCACAGATCGGTCATGAGAAAGGAATTTCCACGTATGGCAAAGGCTGTCATTAATCAGGTGGCTGACAATTACTACCGCCCGGACTTGAAGAAGGCTGCCCTCGCAAAGCTTAGCGTAGTACACAGGAGTCTCAAGGTTGCCAAGTCAGGTGTGAAGAAGAGGAACAGGCAGGCACTCAAGACCCGCGGTAGGAAGTGA

Protein sequence

MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQPGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALAKLSVVHRSLKVAKSGVKKRNRQALKTRGRK

Homology

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BLAST of MC08g2546.1 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.7e-53
Identity = 103/143 (72.03%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
              KD +V+LATTK KKQNKP   +++S+++KEFPRM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

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BLAST of MC08g2546.1 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.8e-53
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+NN FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
             GKD  V+L TTK K+QNKP   +++S+++KEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

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BLAST of MC08g2546.1 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.8e-13
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 3   NVPGQLVWEIVKKNNSFLVK--EFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 62
           +V   L+W++++ NN FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMA-KAVINQVADNYYRPDLKKAAL 122
                  VL+  T  K   KPA L  + V+     R   K++  ++    YR DL K ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 AKLSVVHRSLKVAKS 135
           A+ S +  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

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BLAST of MC08g2546.1 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 0


Query: 8   LVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQPGGKDLS 67
           L W I++ NN+FLVK   + N    FSKEPNN+ NLNSY+++GL  +K V +        
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  VLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQV----ADNYYRPDLKKAALAKLS 127
             +   KAK  NKPA    ++ +R++F   A+  + +V      N+YR DL KA L + S
Sbjct: 65  FTVVYKKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRAS 124

Query: 128 VVHRSLKVAKSGVKKRNRQALKT 147
            + RS +  K+  KK      KT
Sbjct: 125 AILRSQRPIKA--KKPKAAVAKT 138

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BLAST of MC08g2546.1 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 8   LVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQPGGKDLS 67
           L W +V+  +SFL+K   +      +S EPNNL   NS++++GL +RKTV ++P      
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  VLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALAKLSVVHR 127
           V++   +   Q KPA+   R+ + K       ++ + +  N YRPDL+ AA+ + S + R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

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BLAST of MC08g2546.1 vs. NCBI nr
Match: XP_022154747.1 (60S ribosomal protein L28-1-like [Momordica charantia])

HSP 1 Score: 288 bits (736), Expect = 9.80e-98
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLSVVHRSLKVAKSGVKKRNRQALKTRGRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. NCBI nr
Match: XP_038889445.1 (60S ribosomal protein L28-1-like [Benincasa hispida])

HSP 1 Score: 269 bits (687), Expect = 2.91e-90
Identity = 137/150 (91.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFL KEFGRGNA +QFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLFKEFGRGNASIQFSKEPNNLYNLNSYKHSGLANQKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKDLSVLLATTK KKQNKPASLLH+S+MRKEFPRMAKAV NQVADNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKTKKQNKPASLLHKSIMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLKVAKSGVKKRNRQA++TRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. NCBI nr
Match: XP_022999539.1 (60S ribosomal protein L28-1-like [Cucurbita maxima] >XP_022999540.1 60S ribosomal protein L28-1-like [Cucurbita maxima])

HSP 1 Score: 266 bits (681), Expect = 2.39e-89
Identity = 137/150 (91.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+ FLVKEFGRG+AGVQFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKDLSVLLATTK KKQNKPASLL++SVMRKEFP MAKAV NQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLK+AKSGVKKRNRQA++TRGRK
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. NCBI nr
Match: XP_022938097.1 (60S ribosomal protein L28-2-like [Cucurbita moschata])

HSP 1 Score: 266 bits (679), Expect = 4.82e-89
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
            GGKDLS+L+ATTK KKQNKPASLLH+S+ RKEFPRM K V NQVADNYYRPDLK AALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLKVA+SGVKKRNRQA+KTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. NCBI nr
Match: KAG7021324.1 (60S ribosomal protein L28-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264 bits (675), Expect = 1.96e-88
Identity = 134/150 (89.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKN+SFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
            GGKDLS+L+ATTK KKQNKPASLLH+S+ RKEFPRM K V NQVADNYYRPDLK AALA
Sbjct: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLKVA+SGVKKRNRQA+KTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 4.75e-98
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLSVVHRSLKVAKSGVKKRNRQALKTRGRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. ExPASy TrEMBL
Match: A0A6J1KHD5 (60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=3 SV=1)

HSP 1 Score: 266 bits (681), Expect = 1.16e-89
Identity = 137/150 (91.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+ FLVKEFGRG+AGVQFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKDLSVLLATTK KKQNKPASLL++SVMRKEFP MAKAV NQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLK+AKSGVKKRNRQA++TRGRK
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. ExPASy TrEMBL
Match: A0A6J1FD25 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 2.33e-89
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
            GGKDLS+L+ATTK KKQNKPASLLH+S+ RKEFPRM K V NQVADNYYRPDLK AALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLKVA+SGVKKRNRQA+KTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of MC08g2546.1 vs. ExPASy TrEMBL
Match: A0A0A0LHT1 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000570 PE=3 SV=1)

HSP 1 Score: 264 bits (674), Expect = 6.22e-88
Identity = 138/150 (92.00%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLVWEIVKKN+SFLVKEFGRGNA VQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 47  MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 106

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKDLSVLLAT+K KKQNKPA+ LH+SVMRKEFPRMAKAVINQVADNYYRPDLK AALA
Sbjct: 107 PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVINQVADNYYRPDLKNAALA 166

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           KLS VHRSLKVAKSGVKKRNRQ++ TRGRK
Sbjct: 167 KLSAVHRSLKVAKSGVKKRNRQSV-TRGRK 195

[Close]

BLAST of MC08g2546.1 vs. ExPASy TrEMBL
Match: A0A6J5Y3Z7 (Ribosomal_L28e domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS45782 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 7.81e-88
Identity = 132/150 (88.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WE+VKKNNSFLVK+FGRGNAGV+FSKEPNNLYNL+SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEVVKKNNSFLVKQFGRGNAGVRFSKEPNNLYNLHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
           PGGKD SV+LATTK KKQNKPASLLH+SV+RKEFPR+AKAVINQVADN+YRPDLKKAALA
Sbjct: 61  PGGKDQSVVLATTKTKKQNKPASLLHKSVIRKEFPRVAKAVINQVADNFYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150
           +LSVVHRSLKV+KSGVKKRNRQA+KT GRK
Sbjct: 121 RLSVVHRSLKVSKSGVKKRNRQAVKTPGRK 150

[Close]

BLAST of MC08g2546.1 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-54
Identity = 103/143 (72.03%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
              KD +V+LATTK KKQNKP   +++S+++KEFPRM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of MC08g2546.1 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-54
Identity = 103/143 (72.03%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
              KD +V+LATTK KKQNKP   +++S+++KEFPRM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of MC08g2546.1 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-54
Identity = 103/143 (72.03%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
              KD +V+LATTK KKQNKP   +++S+++KEFPRM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of MC08g2546.1 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+NN FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
             GKD  V+L TTK K+QNKP   +++S+++KEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of MC08g2546.1 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 102/143 (71.33%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL+WEIVK+NN FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120
             GKD  V+L TTK K+QNKP   +++S+++KEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSVVHRSLKVAKSGVKKRNRQA 144
           +LS + + L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

The following BLAST results are available for this feature:

BLAST of MC08g2546.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82204	5.7e-53	72.03	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q9M0E2	9.8e-53	71.33	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O14069	5.8e-13	34.07	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q962T2	1.7e-12	37.06	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
Q3T0L7	3.7e-12	33.33	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]

BLAST of MC08g2546.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154747.1	9.80e-98	100.00	60S ribosomal protein L28-1-like [Momordica charantia]	[more]
XP_038889445.1	2.91e-90	91.33	60S ribosomal protein L28-1-like [Benincasa hispida]	[more]
XP_022999539.1	2.39e-89	91.33	60S ribosomal protein L28-1-like [Cucurbita maxima] >XP_022999540.1 60S ribosoma...	[more]
XP_022938097.1	4.82e-89	90.00	60S ribosomal protein L28-2-like [Cucurbita moschata]	[more]
KAG7021324.1	1.96e-88	89.33	60S ribosomal protein L28-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MC08g2546.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMI9	4.75e-98	100.00	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]
A0A6J1KHD5	1.16e-89	91.33	60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=...	[more]
A0A6J1FD25	2.33e-89	90.00	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 P...	[more]
A0A0A0LHT1	6.22e-88	92.00	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000...	[more]
A0A6J5Y3Z7	7.81e-88	88.00	Ribosomal_L28e domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDH...	[more]

BLAST of MC08g2546.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19730.1	4.1e-54	72.03	Ribosomal L28e protein family	[more]
AT2G19730.2	4.1e-54	72.03	Ribosomal L28e protein family	[more]
AT2G19730.3	4.1e-54	72.03	Ribosomal L28e protein family	[more]
AT4G29410.1	6.9e-54	71.33	Ribosomal L28e protein family	[more]
AT4G29410.2	6.9e-54	71.33	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 1.3E-33 score: 116.1
None	No IPR available	GENE3D	3.30.390.110		coord: 6..134 e-value: 6.6E-44 score: 151.4
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g2546	MC08g2546	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2546.1-utr3	MC08g2546.1-utr3-MC08:34183690..34183916	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2546.1-cds	MC08g2546.1-cds-MC08:34183917..34184057	CDS
MC08g2546.1-cds	MC08g2546.1-cds-MC08:34185699..34185862	CDS
MC08g2546.1-cds	MC08g2546.1-cds-MC08:34186140..34186287	CDS

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2546.1-utr5	MC08g2546.1-utr5-MC08:34186288..34186555	utr5

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g2546.1	MC08g2546.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome