MC08g2351.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2351.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 32365045 .. 32365353 (+)
Sequence length	309
RNA-Seq Expression	MC08g2351.1
Synteny	MC08g2351.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTGTTCTCAAGGCCGCCACCTTTTCTTTTCTTATTGTCACTATTATTTTCGACGTGTCTGCGGCCAGGGTCTTGCTGCCCATGGCGGTGCTGCAGCGAGGCCCCGTGCCTAGCTCCGGGAGGAATCCCTGCTCGCTTATCCCAGGCCTCAGCCGTGGCCGCTGCACGTTGAGCGATGTGGACGACGTCGCGGCCGTCGTCCATGGTGGCTCCTCCTCTGCCTTCCCCGGCCTGAATGTTGCTGGTTTTGCTGCTGATGCCGTGGCTAACCATTACCAGACCCAGAAGCCAGATTCGTCT

mRNA sequence

ATGGCTTCCACTGTTCTCAAGGCCGCCACCTTTTCTTTTCTTATTGTCACTATTATTTTCGACGTGTCTGCGGCCAGGGTCTTGCTGCCCATGGCGGTGCTGCAGCGAGGCCCCGTGCCTAGCTCCGGGAGGAATCCCTGCTCGCTTATCCCAGGCCTCAGCCGTGGCCGCTGCACGTTGAGCGATGTGGACGACGTCGCGGCCGTCGTCCATGGTGGCTCCTCCTCTGCCTTCCCCGGCCTGAATGTTGCTGGTTTTGCTGCTGATGCCGTGGCTAACCATTACCAGACCCAGAAGCCAGATTCGTCT

Coding sequence (CDS)

ATGGCTTCCACTGTTCTCAAGGCCGCCACCTTTTCTTTTCTTATTGTCACTATTATTTTCGACGTGTCTGCGGCCAGGGTCTTGCTGCCCATGGCGGTGCTGCAGCGAGGCCCCGTGCCTAGCTCCGGGAGGAATCCCTGCTCGCTTATCCCAGGCCTCAGCCGTGGCCGCTGCACGTTGAGCGATGTGGACGACGTCGCGGCCGTCGTCCATGGTGGCTCCTCCTCTGCCTTCCCCGGCCTGAATGTTGCTGGTTTTGCTGCTGATGCCGTGGCTAACCATTACCAGACCCAGAAGCCAGATTCGTCT

Protein sequence

MASTVLKAATFSFLIVTIIFDVSAARVLLPMAVLQRGPVPSSGRNPCSLIPGLSRGRCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVANHYQTQKPDSS

Homology

[Close]

BLAST of MC08g2351.1 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 1.44e-27
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MASTVLKAATFSFLIVTIIFDVSAARVL----LPMAVLQRGPVPSSGRNPCSLIPGLSRG 60
           MA +++K   F F+ ++I FDVS  R L    +P+AVL RGPVPSS RNPCS IPG SRG
Sbjct: 1   MAFSLVKTVAFLFIFLSI-FDVSVGRWLPGSRVPIAVL-RGPVPSSSRNPCSFIPGFSRG 60

Query: 61  RCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVANHYQTQKPDSS 103
           RCTLS+VDD AA VHGGSS AFPGLN  GFAA ++ N  QTQK DSS
Sbjct: 61  RCTLSEVDDGAASVHGGSS-AFPGLNADGFAAASMVN--QTQKQDSS 102

[Close]

BLAST of MC08g2351.1 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 100 bits (250), Expect = 4.62e-25
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MASTVLKAATFSFLIVTIIFDVSAARVL----------LPMAVLQRGPVPSSGRNPCSLI 60
           MA +++K   F F+ ++I+ D+SAARVL          +P A+L RGPVPSS RNPCS I
Sbjct: 1   MAFSLMKTVAFLFIFLSIV-DMSAARVLNGERWLPGSMVPFAML-RGPVPSSSRNPCSFI 60

Query: 61  PGLSRGRCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVANHYQTQKPDSS 103
           PG SRGRCTLS+VD+  A V GGSS AFPGLN  GFAA +V N  QTQK DSS
Sbjct: 61  PGFSRGRCTLSEVDEGDASVRGGSS-AFPGLNADGFAAASVVN--QTQKQDSS 108

[Close]

BLAST of MC08g2351.1 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 2.72e-20
Identity = 56/91 (61.54%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 23  SAARVL----------LPMAVLQRGPVPSSGRNPCSLIPGLSRGRCTLSDVDDVAAVVHG 82
           SAARV+          +PMA+L RG VPSS RNPCS IPG SRGRCTLS+ DD AA VHG
Sbjct: 2   SAARVMTGERWLPAPRVPMAML-RGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 61

Query: 83  GSSSAFPGLNVAGFAADAVANHYQTQKPDSS 103
           GSS A  GLN  GFAA ++AN  +TQK D S
Sbjct: 62  GSS-ALSGLNADGFAAASMAN--KTQKKDPS 88

[Close]

BLAST of MC08g2351.1 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 1.58e-18
Identity = 56/100 (56.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 8   AATFSFLIVTIIFDVSAARVLL-----PMAV-LQRGPVPSSGRNPCSLIPGLSRGRCTLS 67
           AA F F+++ I F VSAARVL      P++  + RG VP SGRNPCS IPGL RGRCTLS
Sbjct: 10  AAAFVFILLCI-FHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFIPGLGRGRCTLS 69

Query: 68  DVDDVAAVVHGGS-SSAFPGLNVAGFAADAVANHYQTQKP 100
           +V+D A    GG  SSAFPG+N  GF+A A+ N  Q Q P
Sbjct: 70  EVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDP 108

[Close]

BLAST of MC08g2351.1 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 62.4 bits (150), Expect = 7.95e-10
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 34  LQRGPVPSSGRNPCSLIPGLSRGRCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVAN 93
           LQRGPVP SG NPC+ IPG +RGRCTLS++D VA       ++AFP + V  F A    N
Sbjct: 52  LQRGPVPPSGGNPCTFIPGRNRGRCTLSEMD-VAGQFPRAPAAAFPDI-VVDFGAVTAGN 111

Query: 94  H--YQTQKPDSS 103
               +TQK DSS
Sbjct: 112 SGANETQKQDSS 121

[Close]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 6.98e-28
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MASTVLKAATFSFLIVTIIFDVSAARVL----LPMAVLQRGPVPSSGRNPCSLIPGLSRG 60
           MA +++K   F F+ ++I FDVS  R L    +P+AVL RGPVPSS RNPCS IPG SRG
Sbjct: 1   MAFSLVKTVAFLFIFLSI-FDVSVGRWLPGSRVPIAVL-RGPVPSSSRNPCSFIPGFSRG 60

Query: 61  RCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVANHYQTQKPDSS 103
           RCTLS+VDD AA VHGGSS AFPGLN  GFAA ++ N  QTQK DSS
Sbjct: 61  RCTLSEVDDGAASVHGGSS-AFPGLNADGFAAASMVN--QTQKQDSS 102

[Close]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 2.24e-25
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MASTVLKAATFSFLIVTIIFDVSAARVL----------LPMAVLQRGPVPSSGRNPCSLI 60
           MA +++K   F F+ ++I+ D+SAARVL          +P A+L RGPVPSS RNPCS I
Sbjct: 1   MAFSLMKTVAFLFIFLSIV-DMSAARVLNGERWLPGSMVPFAML-RGPVPSSSRNPCSFI 60

Query: 61  PGLSRGRCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVANHYQTQKPDSS 103
           PG SRGRCTLS+VD+  A V GGSS AFPGLN  GFAA +V N  QTQK DSS
Sbjct: 61  PGFSRGRCTLSEVDEGDASVRGGSS-AFPGLNADGFAAASVVN--QTQKQDSS 108

[Close]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL
Match: A0A2N9F903 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.07e-09
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 29 LPMAVLQRGPVPSSGRNPCSLIPGLSRGRCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAA 88
          L M  LQRGPV  SG NPC+ IPG S GRCTLS++D    V H  +  AFP  +V  FAA
Sbjct: 31 LAMQTLQRGPVTPSGPNPCTYIPGRSHGRCTLSEMDVADHVAH--APPAFPD-HVVSFAA 90

Query: 89 DAVAN 93
           ++AN
Sbjct: 91 ASIAN 92

[Close]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL
Match: A0A1Q3BFG1 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.17e-09
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 34  LQRGPVPSSGRNPCSLIPGLSRGRCTLSDVDDVAAVVHGGSSSAFPGLNVAGFAADAVAN 93
           LQRGPV  SG NPC+ IPG   GRCT  ++D      H   S AFP   V   AA +VAN
Sbjct: 46  LQRGPVTPSGPNPCTYIPGRGTGRCTF-EMDAATHDTHDHESPAFPHPFVKFAAASSVAN 105

Query: 94  HYQTQKPDSS 103
             +TQKPD+S
Sbjct: 106 --ETQKPDNS 112

[Close]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL
Match: A0A5B6Z868 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.50e-09
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 29  LPMAVLQRGPVPSSGRNPCSLIPGLSRGRCTLSDVD-DVAAVVHGGSSSAFPGLNVAGFA 88
           LP+  LQRGPVPSSG NPC+ IPG   GRCTL++ + + A  +   +  AFP   V  FA
Sbjct: 43  LPIQSLQRGPVPSSGSNPCTYIPGRGTGRCTLAENEMNFAGELVAHAPPAFPDFMV-NFA 102

Query: 89  ADAVANHYQTQKPDS 102
           A + AN  Q +  DS
Sbjct: 103 AASKANDTQKKDTDS 116

The following BLAST results are available for this feature:

BLAST of MC08g2351.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g2351.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063581.1	1.44e-27	63.55	hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790...	[more]
KGN60782.1	4.62e-25	58.41	hypothetical protein Csa_019261 [Cucumis sativus]	[more]
KAG6599331.1	2.72e-20	61.54	hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6586324.1	1.58e-18	56.00	hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_021888699.1	7.95e-10	52.78	uncharacterized protein LOC110807772 [Carica papaya]	[more]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCY2	6.98e-28	63.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJ84	2.24e-25	58.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1	[more]
A0A2N9F903	1.07e-09	53.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1	[more]
A0A1Q3BFG1	7.17e-09	51.43	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4...	[more]
A0A5B6Z868	7.50e-09	48.00	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1	[more]

BLAST of MC08g2351.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 8..97
None	No IPR available	PANTHER	PTHR33592:SF6	SUBFAMILY NOT NAMED	coord: 8..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g2351	MC08g2351	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2351.1-cds	MC08g2351.1-cds-MC08:32365045..32365353	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g2351.1	MC08g2351.1-protein	polypeptide