MC08g2080.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2080.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S acidic ribosomal protein P3
Location	MC08: 29579199 .. 29580563 (-)
Sequence length	786
RNA-Seq Expression	MC08g2080.1
Synteny	MC08g2080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATATATATAACATCATTTTTAATATTTTAGACAAATTTTAGTTTCCCAAAAGGGCAAGGACTACCAATTGGAACTCAAGAAAACTAACGAGGGTAAAAGAATAATTTGACATGAAGCAAAACCCTCGATTTGCTCTCTCTCTTGCTAGGGTTTCATCATAAAAACCACACAACCAATCTCTGCACAAGACCCGCCCCACTCTCTCTTCTCTCGCCGAATTTCGCTTCAACTAATCTTCTCTCCAATACCAACAATGGGAGTTTTCACCTTCGTTTGCCGGAGCTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGAAGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAAGCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTTCCGCCGTTTTCCAGGTATTCCTTATATATATCTTCTATTGTATCGGTTTGTCGAGTTTATTCTTCAAATACTTTTGATGTTCTCGCGTGATTATTCCCGATCTGATGCTTTTCGATTTCTTTTTTTACATGTTTAGTCAGTATAAGGCATTATCTTCTATTTTATGGTATTTAAGTTTTTCTCTTTTTGGTGTATGCGTTAGTCTGTGTTTGATCTGTAGGTCGATGTTTTCAATTACGAAATTAGGTTTTTGGGTACATGGTCCATTTAGAAATTATTGATCATTTAGAATTTGGTCGACCAAAAGATCTCCGTGCTAAAAGTATTGCATTATTGCATTCTGGAATCTTGGCAATCATATTTCTGGTATAATGATTGATGAATTTCTTGATTGATTAATACCTACCTGCTTAGACGCCAATGTCTCCATTGAAATATTATTTTGTGTGATTCCTTCTTGAAGTTTTTCTGGGTTAGCAAAAGTATTTGCAAGATGAGGGTTTTTTAATACTCTCTTTATGGTATCTCCTCAAGTAATTGCCTGCATTCCTGTTATTACCTGTTGTGTGTACCTAAACACTATTATATTTCAGGTGATCATTGGTGGCGGTGGCGGTGGTGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTTCTGGAGGAGCTGCCCCAGCTGCAGAAGCCCCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGTGACGATGACCTTGGCCTTTCACTTTTTGATTAGTTGGTATAATTACTTGTTATCGTTCTGTCCATTGACATCATAATTTTTTAGGAAATTATGCATATGCAAGTACTTGAATTTGCCAGTTCAGTTTCTGTGCTTGTGAAGGACATGAAATTTTGTTACTGATCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTTG

mRNA sequence

CGAATATATATAACATCATTTTTAATATTTTAGACAAATTTTAGTTTCCCAAAAGGGCAAGGACTACCAATTGGAACTCAAGAAAACTAACGAGGGTAAAAGAATAATTTGACATGAAGCAAAACCCTCGATTTGCTCTCTCTCTTGCTAGGGTTTCATCATAAAAACCACACAACCAATCTCTGCACAAGACCCGCCCCACTCTCTCTTCTCTCGCCGAATTTCGCTTCAACTAATCTTCTCTCCAATACCAACAATGGGAGTTTTCACCTTCGTTTGCCGGAGCTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGAAGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAAGCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTGGCGGTGGTGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTTCTGGAGGAGCTGCCCCAGCTGCAGAAGCCCCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGTGACGATGACCTTGGCCTTTCACTTTTTGATTAGTTGGTATAATTACTTGTTATCGTTCTGTCCATTGACATCATAATTTTTTAGGAAATTATGCATATGCAAGTACTTGAATTTGCCAGTTCAGTTTCTGTGCTTGTGAAGGACATGAAATTTTGTTACTGATCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTTG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTTTGCCGGAGCTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGAAGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAAGCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTGGCGGTGGTGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTTCTGGAGGAGCTGCCCCAGCTGCAGAAGCCCCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGTGACGATGACCTTGGCCTTTCACTTTTTGATTAG

Protein sequence

MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD

Homology

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BLAST of MC08g2080.1 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLF 120
           TSAVF V+IGGGGGGGF +GGGAAA    GG A AA    EKK+EE EE + D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

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BLAST of MC08g2080.1 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-34
Identity = 87/120 (72.50%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGV+TFVCRSSG EWTAKQ  G+LE SAA+ YELQR+LV  A A DS+ GVQSSFS +SP
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 120
           +SAVFQVIIG  GGG  I GGGAAA A SGGAA  A    EKKEEEKEES+DDLG SLFD
Sbjct: 61  SSAVFQVIIGAVGGGAAI-GGGAAAGAASGGAAAEAPKAEEKKEEEKEESEDDLGFSLFD 119

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BLAST of MC08g2080.1 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-33
Identity = 81/121 (66.94%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVC++ G  W+AKQ+ G+LE SA+STYELQRKLVQ +L+ DSSGGVQSSFS +SP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA--EKKEEEKEESDDDLGLSL 120
           TSAVFQVI+GGGGGGGF +GG   AA+  GGA  AA AP   EKK+EE EE + D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGG---AASSGGGAGEAAAAPKEDEKKKEESEEEEGDFGFDL 118

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BLAST of MC08g2080.1 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 141.4 bits (355), Expect = 6.9e-33
Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGV+TFVCR++G EWTAKQ+SG++E SAA+ YELQR+LV  A A DS  GVQSSFS ++P
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIIGG-GGGGGFISGGGAAAAAPSGGAAPAAEAP-AEKKEEEKEESDDDLGLSL 120
           +SAVFQVI+G  GGG   +SGGG   AA SGGA  AAEAP  EKKEEEKEESDDD+G SL
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGA--AAEAPKEEKKEEEKEESDDDMGFSL 120

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BLAST of MC08g2080.1 vs. ExPASy Swiss-Prot
Match: Q93572 (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans OX=6239 GN=rla-0 PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 84  AAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 121
           AAAAP+  AAPAA APA KKEE KEESDDD+G  LFD
Sbjct: 276 AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312

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BLAST of MC08g2080.1 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 219 bits (557), Expect = 2.09e-71
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 120
           TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 120

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BLAST of MC08g2080.1 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 187 bits (475), Expect = 7.10e-59
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAPAEKKEEEKEESDD-DLGLSL 120
           TSAVFQVI+GGGGGGGFI GGG AAAAP+GG APAA EAPAEKKEE KEESDD DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

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BLAST of MC08g2080.1 vs. NCBI nr
Match: XP_034679771.1 (60S acidic ribosomal protein P3 [Vitis riparia] >CAN65458.1 hypothetical protein VITISV_010073 [Vitis vinifera])

HSP 1 Score: 181 bits (460), Expect = 1.33e-56
Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG EWTAKQ +GDLE SAASTY+LQRK VQ+AL+ DSSGGVQSSFSY++P
Sbjct: 1   MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRKCVQSALSADSSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAP-AEKKEEEKEESDDDLGLSLF 120
           +S VFQVI+GGGGGGGF  GGGAAAAAPSGG APAA+AP AE+K+EEKEESDDD+G SLF
Sbjct: 61  SSGVFQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEESDDDMGFSLF 120

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BLAST of MC08g2080.1 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 1.83e-56
Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAPAEKKEEEKEESDD-DLGLSL 120
           TSAVFQVI+GGGGGGGFI GG  AAAAP+GG APAA EAPAEKKEE KEESDD DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

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BLAST of MC08g2080.1 vs. NCBI nr
Match: KCW80893.1 (hypothetical protein EUGRSUZ_C02261 [Eucalyptus grandis] >KCW80895.1 hypothetical protein EUGRSUZ_C02263 [Eucalyptus grandis])

HSP 1 Score: 180 bits (456), Expect = 5.24e-56
Identity = 102/121 (84.30%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG EWTAKQ SGDLE  AAST+ELQRKLVQ+A+A DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCRSSGDEWTAKQVSGDLEACAASTFELQRKLVQSAVAADSSGGVQSSFSLVTP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEA-PAEKKEEEKEESDDDLGLSLF 120
           +SAVFQVIIGGGGGGGFI GGGAAAAAP+GGAAPAAEA PAE+K+EEKEESDDD+G SLF
Sbjct: 61  SSAVFQVIIGGGGGGGFI-GGGAAAAAPAGGAAPAAEAAPAEEKKEEKEESDDDMGFSLF 120

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BLAST of MC08g2080.1 vs. ExPASy TrEMBL
Match: A0A6J1DK62 (60S acidic ribosomal protein P3-2 OS=Momordica charantia OX=3673 GN=LOC111020814 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.01e-71
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 120
           TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 120

[Close]

BLAST of MC08g2080.1 vs. ExPASy TrEMBL
Match: A5BBF0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010073 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 6.44e-57
Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG EWTAKQ +GDLE SAASTY+LQRK VQ+AL+ DSSGGVQSSFSY++P
Sbjct: 1   MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRKCVQSALSADSSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAP-AEKKEEEKEESDDDLGLSLF 120
           +S VFQVI+GGGGGGGF  GGGAAAAAPSGG APAA+AP AE+K+EEKEESDDD+G SLF
Sbjct: 61  SSGVFQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEESDDDMGFSLF 120

[Close]

BLAST of MC08g2080.1 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 8.85e-57
Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAPAEKKEEEKEESDD-DLGLSL 120
           TSAVFQVI+GGGGGGGFI GG  AAAAP+GG APAA EAPAEKKEE KEESDD DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

[Close]

BLAST of MC08g2080.1 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 8.85e-57
Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAA-EAPAEKKEEEKEESDD-DLGLSL 120
           TSAVFQVI+GGGGGGGFI GG  AAAAP+GG APAA EAPAEKKEE KEESDD DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

[Close]

BLAST of MC08g2080.1 vs. ExPASy TrEMBL
Match: A0A059CSI3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C02261 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 2.54e-56
Identity = 102/121 (84.30%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG EWTAKQ SGDLE  AAST+ELQRKLVQ+A+A DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCRSSGDEWTAKQVSGDLEACAASTFELQRKLVQSAVAADSSGGVQSSFSLVTP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEA-PAEKKEEEKEESDDDLGLSLF 120
           +SAVFQVIIGGGGGGGFI GGGAAAAAP+GGAAPAAEA PAE+K+EEKEESDDD+G SLF
Sbjct: 61  SSAVFQVIIGGGGGGGFI-GGGAAAAAPAGGAAPAAEAAPAEEKKEEKEESDDDMGFSLF 120

[Close]

BLAST of MC08g2080.1 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 154.1 bits (388), Expect = 7.3e-38
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLF 120
           TSAVF V+IGGGGGGGF +GGGAAA    GG A AA    EKK+EE EE + D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of MC08g2080.1 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLF 120
           TSAVF V+IGGGGGGGF +GGGAAA    GG A AA    EKK+EE EE + D G  LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 118

[Close]

BLAST of MC08g2080.1 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-34
Identity = 81/121 (66.94%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
           MGVFTFVC++ G  W+AKQ+ G+LE SA+STYELQRKLVQ +L+ DSSGGVQSSFS +SP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPA--EKKEEEKEESDDDLGLSL 120
           TSAVFQVI+GGGGGGGF +GG   AA+  GGA  AA AP   EKK+EE EE + D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGG---AASSGGGAGEAAAAPKEDEKKKEESEEEEGDFGFDL 118

[Close]

BLAST of MC08g2080.1 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-30
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60
          MGVF+FVC+S G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SP
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQVIIGGGGGGGFISGGG 83
          TSAVF V+IGGGGGGGF +GGG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGG 82

[Close]

BLAST of MC08g2080.1 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD 120
           T  +  V  GGGGGG  +S   AAA A +GGAA AA A  EKK+E  EESD DLG  LFD
Sbjct: 57  TDLIMNVGAGGGGGGAPVS---AAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

The following BLAST results are available for this feature:

BLAST of MC08g2080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	1.0e-36	70.59	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
P56724	2.8e-34	72.50	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
Q9SVZ6	2.4e-33	66.94	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
O24413	6.9e-33	68.85	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
Q93572	3.6e-05	75.68	60S acidic ribosomal protein P0 OS=Caenorhabditis elegans OX=6239 GN=rla-0 PE=1 ...	[more]

BLAST of MC08g2080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153281.1	2.09e-71	100.00	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]
XP_038889531.1	7.10e-59	86.89	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_034679771.1	1.33e-56	80.99	60S acidic ribosomal protein P3 [Vitis riparia] >CAN65458.1 hypothetical protein...	[more]
XP_008451467.1	1.83e-56	86.07	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
KCW80893.1	5.24e-56	84.30	hypothetical protein EUGRSUZ_C02261 [Eucalyptus grandis] >KCW80895.1 hypothetica...	[more]

BLAST of MC08g2080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DK62	1.01e-71	100.00	60S acidic ribosomal protein P3-2 OS=Momordica charantia OX=3673 GN=LOC111020814...	[more]
A5BBF0	6.44e-57	80.99	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010073 PE=4 SV=1	[more]
A0A5D3BNN6	8.85e-57	86.07	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	8.85e-57	86.07	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A059CSI3	2.54e-56	84.30	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C02261 PE=3 SV...	[more]

BLAST of MC08g2080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	7.3e-38	70.59	60S acidic ribosomal protein family	[more]
AT5G57290.3	1.4e-36	70.59	60S acidic ribosomal protein family	[more]
AT4G25890.1	1.7e-34	66.94	60S acidic ribosomal protein family	[more]
AT5G57290.2	1.5e-30	79.27	60S acidic ribosomal protein family	[more]
AT4G00810.1	2.8e-05	56.67	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 73..119 e-value: 1.2E-9 score: 38.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..120
None	No IPR available	PANTHER	PTHR47207:SF2	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..120
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g2080	MC08g2080	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2080.1-utr3	MC08g2080.1-utr3-MC08:29579199..29579365	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2080.1-cds	MC08g2080.1-cds-MC08:29579366..29579530	CDS
MC08g2080.1-cds	MC08g2080.1-cds-MC08:29580110..29580307	CDS

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2080.1-utr5	MC08g2080.1-utr5-MC08:29580308..29580563	utr5

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g2080.1	MC08g2080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022626	cytosolic ribosome
molecular_function	GO:0003735	structural constituent of ribosome