MC07g0752.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0752.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	classical arabinogalactan protein 25
Location	MC07: 15244874 .. 15245281 (+)
Sequence length	408
RNA-Seq Expression	MC07g0752.1
Synteny	MC07g0752.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCTTTTGGTATTGTTCAGCACTCATTATGGCTTTCATGGCCTCAACTTTGCTAGCTTTACCATCTGACTCTCTACACAATCCAAAATCCTCCACCATAATCTCAGCCTCTCCATCACTTTTTACCACCAATTCTCCACAACCCATCTCCCCTGAAATTGCTCCATTATTGCCCTCTCCAGGCGGTAACATTCCTTCTGCAACTGGCTCCATTCCCACCATTCCCTCCAACCCAAGCCCTCCCAATCCAGACGAGTTCGAGGCGCCCGCCCCCGATCCCTCGGCCCTCTCGCCATTTGGGCTTCCAGGTTCCTTCGCACCGCCCACAGCCCTGCCTTGGTATTCAAATTCGCTCCTTCTTCTTGCTGGCTCAGCACTATTTCTCTTCTCTCTGCCGTTACAT

mRNA sequence

ATGGCCTCCTTTTGGTATTGTTCAGCACTCATTATGGCTTTCATGGCCTCAACTTTGCTAGCTTTACCATCTGACTCTCTACACAATCCAAAATCCTCCACCATAATCTCAGCCTCTCCATCACTTTTTACCACCAATTCTCCACAACCCATCTCCCCTGAAATTGCTCCATTATTGCCCTCTCCAGGCGGTAACATTCCTTCTGCAACTGGCTCCATTCCCACCATTCCCTCCAACCCAAGCCCTCCCAATCCAGACGAGTTCGAGGCGCCCGCCCCCGATCCCTCGGCCCTCTCGCCATTTGGGCTTCCAGGTTCCTTCGCACCGCCCACAGCCCTGCCTTGGTATTCAAATTCGCTCCTTCTTCTTGCTGGCTCAGCACTATTTCTCTTCTCTCTGCCGTTACAT

Coding sequence (CDS)

ATGGCCTCCTTTTGGTATTGTTCAGCACTCATTATGGCTTTCATGGCCTCAACTTTGCTAGCTTTACCATCTGACTCTCTACACAATCCAAAATCCTCCACCATAATCTCAGCCTCTCCATCACTTTTTACCACCAATTCTCCACAACCCATCTCCCCTGAAATTGCTCCATTATTGCCCTCTCCAGGCGGTAACATTCCTTCTGCAACTGGCTCCATTCCCACCATTCCCTCCAACCCAAGCCCTCCCAATCCAGACGAGTTCGAGGCGCCCGCCCCCGATCCCTCGGCCCTCTCGCCATTTGGGCTTCCAGGTTCCTTCGCACCGCCCACAGCCCTGCCTTGGTATTCAAATTCGCTCCTTCTTCTTGCTGGCTCAGCACTATTTCTCTTCTCTCTGCCGTTACAT

Protein sequence

MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSLLLLAGSALFLFSLPLH

Homology

[Close]

BLAST of MC07g0752.1 vs. ExPASy Swiss-Prot
Match: Q6NN00 (Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 36  ISASPSLFTTNSPQPISPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDP 95
           IS S S  T +  Q +SPEIAPLLPSPG  +PS  GS  TIPS+PSPP+PD  +   PDP
Sbjct: 18  ISLSSSSPTISLVQQLSPEIAPLLPSPGDALPSDDGS-GTIPSSPSPPDPDTNDGSYPDP 77

Query: 96  SALSPFGLP--GSFAPPTALPWYSNSLL-LLAGSALFL 131
            A SPF  P   S +PP +LP     L+ L+  SA FL
Sbjct: 78  LAFSPFASPPVSSPSPPPSLPSAGVLLISLIISSASFL 114

[Close]

BLAST of MC07g0752.1 vs. NCBI nr
Match: XP_022138732.1 (classical arabinogalactan protein 25 [Momordica charantia])

HSP 1 Score: 254 bits (648), Expect = 1.11e-84
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISP------E 60
           MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISP      E
Sbjct: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPE 60

Query: 61  IAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALP 120
           IAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALP
Sbjct: 61  IAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALP 120

Query: 121 WYSNSLLLLAGSALFLFSLPLH 136
           WYSNSLLLLAGSALFLFSLPLH
Sbjct: 121 WYSNSLLLLAGSALFLFSLPLH 142

[Close]

BLAST of MC07g0752.1 vs. NCBI nr
Match: XP_023547783.1 (classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158 bits (399), Expect = 5.03e-47
Identity = 95/136 (69.85%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYC+A+IMAFMAS LLALPS  L NPK S+            S Q +SP+IAPLLP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPS--LPNPKLSS------------SFQELSPDIAPLLP 60

Query: 61  SPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSL 120
           S GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSPFGLPGSFA P  LP YSNSL
Sbjct: 61  SSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSL 120

Query: 121 LLLAGSALFLFSLPLH 136
           LLL   +L  F L LH
Sbjct: 121 LLLTALSLHAFYLHLH 122

[Close]

BLAST of MC07g0752.1 vs. NCBI nr
Match: XP_023006472.1 (classical arabinogalactan protein 25-like [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 9.83e-47
Identity = 99/136 (72.79%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYC+A+IMAFMAS LLALPS  L NPK       SPS       Q +SP+IAPLLP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPS--LPNPK------LSPSF------QELSPDIAPLLP 60

Query: 61  SPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSL 120
           S GGNIPSATGSIPTIPSNPSPPNPDEFEAP PD SALSPFGLPGSFA P  LP YSNSL
Sbjct: 61  STGGNIPSATGSIPTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSL 120

Query: 121 LLLAGSALFLFSLPLH 136
           LL A S L  F L LH
Sbjct: 121 LLTALS-LHAFYLHLH 121

[Close]

BLAST of MC07g0752.1 vs. NCBI nr
Match: KAG6575045.1 (hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013621.1 hypothetical protein SDJN02_23788, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156 bits (395), Expect = 2.04e-46
Identity = 94/136 (69.12%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYC+A+IMAFMAS LLALPS  L NPK S+            S Q +SP+IAPLLP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPS--LPNPKLSS------------SFQELSPDIAPLLP 60

Query: 61  SPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSL 120
           S GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSP GLPGSFA P +LP YSNSL
Sbjct: 61  SSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLPPYSNSL 120

Query: 121 LLLAGSALFLFSLPLH 136
           LLL   +L  F L LH
Sbjct: 121 LLLTALSLHAFYLHLH 122

[Close]

BLAST of MC07g0752.1 vs. NCBI nr
Match: XP_022958905.1 (classical arabinogalactan protein 25-like [Cucurbita moschata])

HSP 1 Score: 153 bits (387), Expect = 3.37e-45
Identity = 93/136 (68.38%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYC+A+IMA MAS LLALPS  L NPK S+            S Q +SP+IAPLLP
Sbjct: 1   MASFWYCAAVIMALMASPLLALPS--LPNPKLSS------------SFQELSPDIAPLLP 60

Query: 61  SPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSL 120
           S GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSP GLPGSFA P  LP YSNSL
Sbjct: 61  SSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSL 120

Query: 121 LLLAGSALFLFSLPLH 136
           LLL   +L  F L LH
Sbjct: 121 LLLTALSLHAFYLHLH 122

[Close]

BLAST of MC07g0752.1 vs. ExPASy TrEMBL
Match: A0A6J1CBZ0 (classical arabinogalactan protein 25 OS=Momordica charantia OX=3673 GN=LOC111009825 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 5.36e-85
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISP------E 60
           MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISP      E
Sbjct: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPE 60

Query: 61  IAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALP 120
           IAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALP
Sbjct: 61  IAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALP 120

Query: 121 WYSNSLLLLAGSALFLFSLPLH 136
           WYSNSLLLLAGSALFLFSLPLH
Sbjct: 121 WYSNSLLLLAGSALFLFSLPLH 142

[Close]

BLAST of MC07g0752.1 vs. ExPASy TrEMBL
Match: A0A6J1KVY5 (classical arabinogalactan protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111499190 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 4.76e-47
Identity = 99/136 (72.79%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYC+A+IMAFMAS LLALPS  L NPK       SPS       Q +SP+IAPLLP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPS--LPNPK------LSPSF------QELSPDIAPLLP 60

Query: 61  SPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSL 120
           S GGNIPSATGSIPTIPSNPSPPNPDEFEAP PD SALSPFGLPGSFA P  LP YSNSL
Sbjct: 61  STGGNIPSATGSIPTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSL 120

Query: 121 LLLAGSALFLFSLPLH 136
           LL A S L  F L LH
Sbjct: 121 LLTALS-LHAFYLHLH 121

[Close]

BLAST of MC07g0752.1 vs. ExPASy TrEMBL
Match: A0A6J1H4T0 (classical arabinogalactan protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111460056 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 1.63e-45
Identity = 93/136 (68.38%), Postives = 101/136 (74.26%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYC+A+IMA MAS LLALPS  L NPK S+            S Q +SP+IAPLLP
Sbjct: 1   MASFWYCAAVIMALMASPLLALPS--LPNPKLSS------------SFQELSPDIAPLLP 60

Query: 61  SPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNSL 120
           S GG+IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSP GLPGSFA P  LP YSNSL
Sbjct: 61  SSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSL 120

Query: 121 LLLAGSALFLFSLPLH 136
           LLL   +L  F L LH
Sbjct: 121 LLLTALSLHAFYLHLH 122

[Close]

BLAST of MC07g0752.1 vs. ExPASy TrEMBL
Match: A0A5A7SSC0 (Classical arabinogalactan protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001190 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 1.16e-43
Identity = 94/138 (68.12%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYCSA+IM FMAS LLALPS  + NPK S+              Q +SPEIAPLLP
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPS--VPNPKPSSPF------------QELSPEIAPLLP 60

Query: 61  SPGGNIPSATGS-IPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNS 120
           S G  IPSATGS IPTIPSNPSPPNPD+FEA  PD SALSPFGLPGSFAPP +LP YSN 
Sbjct: 61  STGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNW 120

Query: 121 LLLLA-GSALFLFSLPLH 136
           LLLL  G AL  FS+ LH
Sbjct: 121 LLLLLNGLALLAFSMHLH 124

[Close]

BLAST of MC07g0752.1 vs. ExPASy TrEMBL
Match: A0A0A0KBF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 1.16e-43
Identity = 94/138 (68.12%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPEIAPLLP 60
           MASFWYCSA+IM FMAS LLALPS  + NPK S+              Q +SPEIAPLLP
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPS--VPNPKPSSPF------------QELSPEIAPLLP 60

Query: 61  SPGGNIPSATGS-IPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPGSFAPPTALPWYSNS 120
           S G  IPSATGS IPTIPSNPSPPNPD+FEA  PD SALSPFGLPGSFAPP +LP YSN 
Sbjct: 61  STGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNW 120

Query: 121 LLLLA-GSALFLFSLPLH 136
           LLLL  G AL  FS+ LH
Sbjct: 121 LLLLLNGLALLTFSMHLH 124

[Close]

BLAST of MC07g0752.1 vs. TAIR 10
Match: AT5G18690.1 (arabinogalactan protein 25 )

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-11
Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 36  ISASPSLFTTNSPQPISPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDP 95
           IS S S  T +  Q +SPEIAPLLPSPG  +PS  GS  TIPS+PSPP+PD  +   PDP
Sbjct: 18  ISLSSSSPTISLVQQLSPEIAPLLPSPGDALPSDDGS-GTIPSSPSPPDPDTNDGSYPDP 77

Query: 96  SALSPFGLP--GSFAPPTALPWYSNSLL-LLAGSALFL 131
            A SPF  P   S +PP +LP     L+ L+  SA FL
Sbjct: 78  LAFSPFASPPVSSPSPPPSLPSAGVLLISLIISSASFL 114

The following BLAST results are available for this feature:

BLAST of MC07g0752.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN00	1.2e-09	52.04	Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE...	[more]

BLAST of MC07g0752.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138732.1	1.11e-84	95.77	classical arabinogalactan protein 25 [Momordica charantia]	[more]
XP_023547783.1	5.03e-47	69.85	classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006472.1	9.83e-47	72.79	classical arabinogalactan protein 25-like [Cucurbita maxima]	[more]
KAG6575045.1	2.04e-46	69.12	hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958905.1	3.37e-45	68.38	classical arabinogalactan protein 25-like [Cucurbita moschata]	[more]

BLAST of MC07g0752.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBZ0	5.36e-85	95.77	classical arabinogalactan protein 25 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1KVY5	4.76e-47	72.79	classical arabinogalactan protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1H4T0	1.63e-45	68.38	classical arabinogalactan protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5A7SSC0	1.16e-43	68.12	Classical arabinogalactan protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KBF8	1.16e-43	68.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1	[more]

BLAST of MC07g0752.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18690.1	8.6e-11	52.04	arabinogalactan protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..97
None	No IPR available	PANTHER	PTHR35725:SF3	CLASSICAL ARABINOGALACTAN PROTEIN 25	coord: 1..124
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC07g0752	MC07g0752	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC07g0752.1-cds	MC07g0752.1-cds-MC07:15244874..15245281	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC07g0752.1	MC07g0752.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane