MC06g_new0127.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0127.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 5660931 .. 5661777 (-)
Sequence length	489
RNA-Seq Expression	MC06g_new0127.1
Synteny	MC06g_new0127.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTACGTTATGAAACCGGGCTCTGAAGGATACATTTGAAGGGGTTCATTCTCCAACGTTGCGTTGTCAAACTCTGGAATAACTTTCTAAAACAAAAACCAATTCTGGAAACCACGAAATTAACAATAAATAAGAAAAATCGTGTAAAGCAATGATAATATTGAACAATAATCTTATTACAAGGAGAAGTTTATGAAGGGAGGAAGAGAACGCCAAGTAAAGGAAAGGATGATATGATACACATATTACAAGCTGAGGTTCAAGATTTAAGGAGGAGGTTTAAAGATGAGAAAATTGAGAGTTTCGAGGGCAAAATAGATGAAGGTGGCGGTGGAATGGGTGAAGAAAGAGCCGAAATTGGAACCCACCACGCATTGCCATCCACCTCCATAAGTGCGATCGAATTCCTTTTTGATATGGGCGGCGAGGGAGAGGCAATCGGAGACGTCGAAGAGATCGAGGGCGTGAGATGCAGAGGCCATGGCGTGAATCTGCATCTTCTCCGACATGTCGGTTTCTTTCACCCTGCCCTTCCCTTCCAACATCGAATTAAATATATTGGCTGCTGTGCTGCTGCCCTGTTGCCAATCCAAGGTTATTATATAACTGGAGCCACAGGAGAAAAGAAATGGCTATGGCTGTGGCTGCCAATTTGGAACACAGCCCTCTATCTCTCTCACACCCACCGCCTACACAGACTAGTCGCAGCCGAAGGTTACTGATTTGATGTGTTTTGCGTATGGAATACTTCCAAACTTTTTGTATCCTTTTTCTCTTTTTCTTTCCAGAATTTTCACTCACGTTCCATTCACGTGTCAATCAATCAAATAACCCCTTTTATCTTTT

mRNA sequence

ATGATACACATATTACAAGCTGAGGTTCAAGATTTAAGGAGGAGGTTTAAAGATGAGAAAATTGAGAGTTTCGAGGGCAAAATAGATGAAGGTGGCGGTGGAATGGGTGAAGAAAGAGCCGAAATTGGAACCCACCACGCATTGCCATCCACCTCCATAAGTGCGATCGAATTCCTTTTTGATATGGGCGGCGAGGGAGAGGCAATCGGAGACGTCGAAGAGATCGAGGGCGTGAGATGCAGAGGCCATGGCGTGAATCTGCATCTTCTCCGACATGTCGGTTTCTTTCACCCTGCCCTTCCCTTCCAACATCGAATTAAATATATTGGCTGCTGTGCTGCTGCCCTGTTGCCAATCCAAGGTTATTATATAACTGGAGCCACAGGAGAAAAGAAATGGCTATGGCTGTGGCTGCCAATTTGGAACACAGCCCTCTATCTCTCTCACACCCACCGCCTACACAGACTAGTCGCAGCCGAAGGTTACTGA

Coding sequence (CDS)

ATGATACACATATTACAAGCTGAGGTTCAAGATTTAAGGAGGAGGTTTAAAGATGAGAAAATTGAGAGTTTCGAGGGCAAAATAGATGAAGGTGGCGGTGGAATGGGTGAAGAAAGAGCCGAAATTGGAACCCACCACGCATTGCCATCCACCTCCATAAGTGCGATCGAATTCCTTTTTGATATGGGCGGCGAGGGAGAGGCAATCGGAGACGTCGAAGAGATCGAGGGCGTGAGATGCAGAGGCCATGGCGTGAATCTGCATCTTCTCCGACATGTCGGTTTCTTTCACCCTGCCCTTCCCTTCCAACATCGAATTAAATATATTGGCTGCTGTGCTGCTGCCCTGTTGCCAATCCAAGGTTATTATATAACTGGAGCCACAGGAGAAAAGAAATGGCTATGGCTGTGGCTGCCAATTTGGAACACAGCCCTCTATCTCTCTCACACCCACCGCCTACACAGACTAGTCGCAGCCGAAGGTTACTGA

Protein sequence

MIHILQAEVQDLRRRFKDEKIESFEGKIDEGGGGMGEERAEIGTHHALPSTSISAIEFLFDMGGEGEAIGDVEEIEGVRCRGHGVNLHLLRHVGFFHPALPFQHRIKYIGCCAAALLPIQGYYITGATGEKKWLWLWLPIWNTALYLSHTHRLHRLVAAEGY

Homology

[Close]

BLAST of MC06g_new0127.1 vs. ExPASy TrEMBL
Match: A0A0A9CU04 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.21e-20
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 17  KDEKIESFEGKIDEGGGGMGEERAEIGTHHALPSTSISAIEFLFDMGGEGEAIGDVEEIE 76
           ++E+ ES +G++DEG  G+GEE AE+GTHHALP   ++ +E  FD+ G+G A+GDVEE+E
Sbjct: 34  EEEEGESLKGEVDEGTAGVGEEAAEVGTHHALPPHPVTLVELRFDVAGDGAAVGDVEEVE 93

Query: 77  GVRCRGHGVNLHLLRHVGFFHPALPFQH-RIKYIGCCAAALLP 118
               R     LH  RHV   H +LP QH R    GC     LP
Sbjct: 94  RAGGRRRRRGLHPRRHVCVLHQSLPLQHPRPPPAGCLLILSLP 136

[Close]

BLAST of MC06g_new0127.1 vs. ExPASy TrEMBL
Match: A0A0E0NCT6 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.33e-14
Identity = 46/137 (33.58%), Postives = 62/137 (45.26%), Query Frame = 0


Query: 17  KDEKIESFEGKIDEGGGGMGEERAEIGTHHALPSTSISAIEFL----------------- 76
           ++E+ E+ EG++DEG  G+GEE AE+  HHALP   +  +E L                 
Sbjct: 16  EEEEGEALEGEVDEGAAGVGEEAAEVCAHHALPPHPVPLVELLQHQQTNNKSNPKSSPLI 75

Query: 77  --------------------------FDMGGEGEAIGDVEEIEGVRCRGHGVNLHLLRHV 110
                                      D+ G+G A+GDVEE+E  R RG G  LH  RHV
Sbjct: 76  HPAQSNRLMHGRFNQIHGGFLGATCRLDVSGDGAAVGDVEEVERPRRRGRGRRLHPRRHV 135

[Close]

BLAST of MC06g_new0127.1 vs. ExPASy TrEMBL
Match: A0A0E0G4S3 (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.33e-14
Identity = 46/137 (33.58%), Postives = 62/137 (45.26%), Query Frame = 0


Query: 17  KDEKIESFEGKIDEGGGGMGEERAEIGTHHALPSTSISAIEFL----------------- 76
           ++E+ E+ EG++DEG  G+GEE AE+  HHALP   +  +E L                 
Sbjct: 16  EEEEGEALEGEVDEGAAGVGEEAAEVCAHHALPPHPVPLVELLQHQQTNNKSNPKSSPLI 75

Query: 77  --------------------------FDMGGEGEAIGDVEEIEGVRCRGHGVNLHLLRHV 110
                                      D+ G+G A+GDVEE+E  R RG G  LH  RHV
Sbjct: 76  HPAQSNRLMHGRFNQIHGGFLGATCRLDVSGDGAAVGDVEEVERPRRRGRGRRLHPRRHV 135

The following BLAST results are available for this feature:

BLAST of MC06g_new0127.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0127.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0127.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9CU04	4.21e-20	46.60	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0E0NCT6	4.33e-14	33.58	Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1	[more]
A0A0E0G4S3	4.33e-14	33.58	Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1	[more]

BLAST of MC06g_new0127.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC06g_new0127	MC06g_new0127	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC06g_new0127.1-cds	MC06g_new0127.1-cds-MC06:5661055..5661543	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC06g_new0127.1	MC06g_new0127.1-protein	polypeptide