MC05g_new0276.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0276.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 13898456 .. 13900676 (-)
Sequence length	654
RNA-Seq Expression	MC05g_new0276.1
Synteny	MC05g_new0276.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCCTTTTGCTTTCTTTACGGAGATAAAAGGTAGAGTTTAATTGGGATATTGACTCAAATGACTTTCAAAAACTTTTGAAATGCTCAAATAACCCTCTTTCTTTTATTGTGTCCTAATGACCCACTTAATATTAAATTAATTTTTATAGGTAGCGAAATTACTATAGTACCCTTCGTTCAAAAAATTGAACCGTTCTAACTTTCCCCATTTCTCTTCGTTTTCAGTCGCCGTTCGTCTTCTCCTTCTCCGTTCGTCTTTTCCTTTTCCGTTTGCGTGAGTCGTCTTCTCCTTCTCCATTCACGTGAGTCGTCTTCTCCCGCTCCGTCTCCGTTCGAAATCGCTCGAGGTAAGTTCAATTTTTCCACTGTTCCGTGGGGTTAGGGCTACGTTTTTTCATCTTGAATGGGTTTTTTTCCGTTGATTCCTAAACACCAGCACTGTATCTTGTTGACCATGTACACGAATGAGTGATTCGCTGTCCGATTTTACTTTATTTTGTTCGTTCTATTATTGGGAGGTTGTTCTGCTGTGATTTCCTTCATTGTTGTTCTGCCGAAATTGATTTTTGAGCTGAAATTGAGTTTTGAGGTATGTGGGAGGGAACCGTTCGAAGTGTGTTGGGAGGTTGAAGAAGGAGGAGAGCTCTGCCATTTTTCTCGGGTCGATCTCGGGCGAGGTTGAGGACGAGGTATTCGTCAGATGCTTGAGGCTGAACCTCGAGGTTCCTCGAGGTTCAGACTATGCTGAATACATCGGGCATAACCTCGCCCGAGGTCAACCTGAGAAAAATGACAGAAGCTTACAAACGTTGAACGACTTTACATATTTTTGTGTAATGTATATTCTGTGAAATTTCTCGAGCCCGATCTTACCCGAGGTTGTGCCCGAGGAAAATTACAGAATGTAAACTTTGTTAACAGTAATATATATTTTGCCCGAATTATTTAGTGAGTTATTAAACAGTGTTCATTTCTGACCATATATGGTTTAGTTTAGTGTAAACTTGATGGTTTGAATCTGAGTGTAAATGTTTGTGTGTATTTACTTATAGGAAATGGATTTGGTACCGAAGGTCCCTCTCGCGCTGTATGTCTCGTCCCAACTGACCTGTCTATCGCACCTAGCGAAGACATCCGAGGCTATTAAGAAGAAACGACTGCAGTTGGGCATTTGCTTGATGTGGATCTTGTTTTTAACGGGCTACTAATTCATTGTCTGTTGCTTTGGGAGGTAAATGAGAGTCATAAGGACACCATGAGTTTTAACTTGTTTGGTAGTAAGGTGTCCTTTGGACGGAGAGAATTTGATTTAATTAGCAGCCTAAAATATTCGACAGCCACCGTTATGAAGGACACCTATCCTCGTAGGCTTAGGGCCTTGTACTTCGATGATAATGTAGACCTAACCTTGGCTGAGTTTGAGAAGAAGTATGAAGTGCTTCGTTTTGAGGATGATTGGGATGCGGTGAAGGTCTCAATTGTATACTTTGTTGAATTTGTACTTTACGGGCGGGAAAGAAGCGTGAAGTACGACAGTAGTCTGCTTGGAATAGTAGATGACTGGGAAGTGTGCTGCAACCATGACTGGGGGCAACTATCATTTGAGAAGACTATGAGGAGTCTAGAGCGAGCACTTGCGAAGAAGACACTTGAGGGGGCGTTGAGGAAATCGTACAGTTTGTATGGTTTCCCGTGGGTGTTTCAGGTAAATAAATATATATAAATTTTTAATTTAATTTGGACATACTAATCGTTACTAACATTATTTGTAATTTGTGCAGGTGTGGGTGTATGAGACAATATCTTCCATGATAGGACGAGTTGCCAGGAAGATAAGTGATAGTTTGGTACCCCGCATGCTCCGGTGGAGGTGCGGTCACTCGACTGGATGGCTCGTGCTGGAGAGGGAGATCTTCCAGTCTACAACAGTAAGTCTAACCCTTTTTTATGACTTTATTTCAAACTATGTAGTATTGATATCATTTTCCGTGCATGCTAGAATTAAGGGCTTAGAACCGACTGAATCGGAGTTGAGGTTTTTGAATAGGGCAATCGAACCACCAGAATCAGATGAACTAGAAGCTGATGAGGAAATCCGTCAACGTCCAAAGACTGCATTCGAGGGTGAGGATAGAAACACGGACCGTCCAACGAACAATGTTGGTGCTCCTACCACTGCCGAGGTCGATCGTAACCAGGATGGAAAGGCGATATAG

mRNA sequence

ATGCAGTCCTTTTGCTTTCTTTACGGAGATAAAAGTCGCCGTTCGTCTTCTCCTTCTCCGTTCGTCTTTTCCTTTTCCGTTTGCGTGAGTCGTCTTCTCCTTCTCCATTCACGTGAGTCGTCTTCTCCCGCTCCGTCTCCGTTCGAAATCGCTCGAGGGAACCGTTCGAAGTGTGTTGGGAGGTTGAAGAAGGAGGAGAGCTCTGCCATTTTTCTCGGGTCGATCTCGGGCGAGGTTGAGGACGAGGTATTCGTCAGATGCTTGAGGCTGAACCTCGAGGTTCCTCGAGGTTCAGACTATGCTGAATACATCGGGCATAACCTCGCCCGAGGACGAGTTGCCAGGAAGATAAGTGATAGTTTGGTACCCCGCATGCTCCGGTGGAGGTGCGGTCACTCGACTGGATGGCTCGTGCTGGAGAGGGAGATCTTCCAGTCTACAACAGGCTTAGAACCGACTGAATCGGAGTTGAGGTTTTTGAATAGGGCAATCGAACCACCAGAATCAGATGAACTAGAAGCTGATGAGGAAATCCGTCAACGTCCAAAGACTGCATTCGAGGGTGAGGATAGAAACACGGACCGTCCAACGAACAATGTTGGTGCTCCTACCACTGCCGAGGTCGATCGTAACCAGGATGGAAAGGCGATATAG

Coding sequence (CDS)

ATGCAGTCCTTTTGCTTTCTTTACGGAGATAAAAGTCGCCGTTCGTCTTCTCCTTCTCCGTTCGTCTTTTCCTTTTCCGTTTGCGTGAGTCGTCTTCTCCTTCTCCATTCACGTGAGTCGTCTTCTCCCGCTCCGTCTCCGTTCGAAATCGCTCGAGGGAACCGTTCGAAGTGTGTTGGGAGGTTGAAGAAGGAGGAGAGCTCTGCCATTTTTCTCGGGTCGATCTCGGGCGAGGTTGAGGACGAGGTATTCGTCAGATGCTTGAGGCTGAACCTCGAGGTTCCTCGAGGTTCAGACTATGCTGAATACATCGGGCATAACCTCGCCCGAGGACGAGTTGCCAGGAAGATAAGTGATAGTTTGGTACCCCGCATGCTCCGGTGGAGGTGCGGTCACTCGACTGGATGGCTCGTGCTGGAGAGGGAGATCTTCCAGTCTACAACAGGCTTAGAACCGACTGAATCGGAGTTGAGGTTTTTGAATAGGGCAATCGAACCACCAGAATCAGATGAACTAGAAGCTGATGAGGAAATCCGTCAACGTCCAAAGACTGCATTCGAGGGTGAGGATAGAAACACGGACCGTCCAACGAACAATGTTGGTGCTCCTACCACTGCCGAGGTCGATCGTAACCAGGATGGAAAGGCGATATAG

Protein sequence

MQSFCFLYGDKSRRSSSPSPFVFSFSVCVSRLLLLHSRESSSPAPSPFEIARGNRSKCVGRLKKEESSAIFLGSISGEVEDEVFVRCLRLNLEVPRGSDYAEYIGHNLARGRVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTGLEPTESELRFLNRAIEPPESDELEADEEIRQRPKTAFEGEDRNTDRPTNNVGAPTTAEVDRNQDGKAI

Homology

[Close]

BLAST of MC05g_new0276.1 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 5.39e-21
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 157 LRFLNRAIEPPESDELEADEEIRQRPKTAFEGEDRNTDRPTNNVGAPTTAEVDRNQDGKA 216
           +RFLNRAIE P SDELEADEE+ QR +TAFEG+DRNTDRPT+N+GAPT AEVDRNQDG+A
Sbjct: 1   MRFLNRAIEQPASDELEADEEVHQRLETAFEGQDRNTDRPTDNIGAPTAAEVDRNQDGEA 60

[Close]

BLAST of MC05g_new0276.1 vs. NCBI nr
Match: XP_022154561.1 (uncharacterized protein LOC111021802 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 1.49e-07
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 112 RVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTG----LEPTESELRFLNRAIEPP 171
           RVA K+    VP + +WR  HST W VL+R+IF ST G    L+ T+ E  FLNR+ +PP
Sbjct: 200 RVANKVLYDTVPHIFKWRYDHSTAWHVLDRDIFCSTKGRTRTLDETDVETSFLNRSFDPP 259

Query: 172 ESDELEADEE 177
            SD+ +  EE
Sbjct: 260 VSDDDDVMEE 269

[Close]

BLAST of MC05g_new0276.1 vs. NCBI nr
Match: XP_022136676.1 (uncharacterized protein LOC111008328 [Momordica charantia])

HSP 1 Score: 51.6 bits (122), Expect = 3.09e-04
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 112 RVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTG-----LEPTESELRFLNRAIEP 167
           RVA +++D  +PR+LRW C +S  + VLERE+F++        LE T+ E + + R + P
Sbjct: 32  RVALRLNDDAIPRLLRWSCTYSRAFNVLEREVFENVKSKVVVRLEATDVERQHMARVMHP 91

[Close]

BLAST of MC05g_new0276.1 vs. NCBI nr
Match: XP_022154965.1 (uncharacterized protein LOC111022110 [Momordica charantia])

HSP 1 Score: 51.6 bits (122), Expect = 9.68e-04
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 112 RVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTG-----LEPTESELRFLNRAIEP 167
           RVA +++D  +PR+LRW C +S  + VLERE+F++        LE T+ E + + R + P
Sbjct: 89  RVALRLNDDAIPRLLRWSCTYSRAFNVLEREVFENVKSKVVVRLEATDVERQHMARVMHP 148

[Close]

BLAST of MC05g_new0276.1 vs. ExPASy TrEMBL
Match: A0A6J1D3R7 (uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016993 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.61e-21
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 157 LRFLNRAIEPPESDELEADEEIRQRPKTAFEGEDRNTDRPTNNVGAPTTAEVDRNQDGKA 216
           +RFLNRAIE P SDELEADEE+ QR +TAFEG+DRNTDRPT+N+GAPT AEVDRNQDG+A
Sbjct: 1   MRFLNRAIEQPASDELEADEEVHQRLETAFEGQDRNTDRPTDNIGAPTAAEVDRNQDGEA 60

[Close]

BLAST of MC05g_new0276.1 vs. ExPASy TrEMBL
Match: A0A6J1DP34 (uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021802 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.20e-08
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 112 RVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTG----LEPTESELRFLNRAIEPP 171
           RVA K+    VP + +WR  HST W VL+R+IF ST G    L+ T+ E  FLNR+ +PP
Sbjct: 200 RVANKVLYDTVPHIFKWRYDHSTAWHVLDRDIFCSTKGRTRTLDETDVETSFLNRSFDPP 259

Query: 172 ESDELEADEE 177
            SD+ +  EE
Sbjct: 260 VSDDDDVMEE 269

[Close]

BLAST of MC05g_new0276.1 vs. ExPASy TrEMBL
Match: A0A6J1C463 (uncharacterized protein LOC111008328 OS=Momordica charantia OX=3673 GN=LOC111008328 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.50e-04
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 112 RVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTG-----LEPTESELRFLNRAIEP 167
           RVA +++D  +PR+LRW C +S  + VLERE+F++        LE T+ E + + R + P
Sbjct: 32  RVALRLNDDAIPRLLRWSCTYSRAFNVLEREVFENVKSKVVVRLEATDVERQHMARVMHP 91

[Close]

BLAST of MC05g_new0276.1 vs. ExPASy TrEMBL
Match: A0A6J1DL40 (uncharacterized protein LOC111022110 OS=Momordica charantia OX=3673 GN=LOC111022110 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.69e-04
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 112 RVARKISDSLVPRMLRWRCGHSTGWLVLEREIFQSTTG-----LEPTESELRFLNRAIEP 167
           RVA +++D  +PR+LRW C +S  + VLERE+F++        LE T+ E + + R + P
Sbjct: 89  RVALRLNDDAIPRLLRWSCTYSRAFNVLEREVFENVKSKVVVRLEATDVERQHMARVMHP 148

The following BLAST results are available for this feature:

BLAST of MC05g_new0276.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0276.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148308.1	5.39e-21	80.33	uncharacterized protein LOC111016993 [Momordica charantia]	[more]
XP_022154561.1	1.49e-07	47.14	uncharacterized protein LOC111021802 [Momordica charantia]	[more]
XP_022136676.1	3.09e-04	39.34	uncharacterized protein LOC111008328 [Momordica charantia]	[more]
XP_022154965.1	9.68e-04	39.34	uncharacterized protein LOC111022110 [Momordica charantia]	[more]

BLAST of MC05g_new0276.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3R7	2.61e-21	80.33	uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DP34	7.20e-08	47.14	uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1C463	1.50e-04	39.34	uncharacterized protein LOC111008328 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1DL40	4.69e-04	39.34	uncharacterized protein LOC111022110 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MC05g_new0276.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..217

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC05g_new0276	MC05g_new0276	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC05g_new0276.1-cds	MC05g_new0276.1-cds-MC05:13898456..13898665	CDS
MC05g_new0276.1-cds	MC05g_new0276.1-cds-MC05:13898744..13898856	CDS
MC05g_new0276.1-cds	MC05g_new0276.1-cds-MC05:13899898..13900071	CDS
MC05g_new0276.1-cds	MC05g_new0276.1-cds-MC05:13900325..13900446	CDS
MC05g_new0276.1-cds	MC05g_new0276.1-cds-MC05:13900642..13900676	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC05g_new0276.1	MC05g_new0276.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity