MC03g_new0173.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC03g_new0173.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC03: 8060153 .. 8061710 (+)
Sequence length	936
RNA-Seq Expression	MC03g_new0173.1
Synteny	MC03g_new0173.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTTTTAAAACACTGGACATTCCTAATGAAAGACAAATCTGAAACTAGCCAATTATTCACAACCTTTCATAAAATGATCCAAAATCAGTTTCAAGTCAATATCCAATTACAGAAAACTAACAATGCACGTGACTTTTTCAACTCTTCCCTTGGAACATATCTCCAAACTCATGACATTGTTCACCAAAGTTCTTGTATTGACACACCATAACAAAATGGTGTCGTTGAACACAAAAATCGTCATCTTCTCGACGTAGCCCATCCCTAATGCTCACATCACACATTCCAAAATATTTTTGGGGTGAAGCTGTTCTCACTGCGACCTATCTCATAAACCGATTGCCCTCCCGTACTCTCAAATTCAGCACACCCTTGCAAAGTTTACTGACGATCTATCCTACATCTTATCTGGTGTCCCAACTACCATTAAAAATATTTGGATGTACTGCATTTGTTCATGTATATCCTCAGAATTGTAGTAAACTTGATGCGAGATCCATAAAATGTGTCTTCCTTGGATACTCATCAAATCAAAAAGGATATAAGTGTTATCATCCTCCATTTCAAAAATTCTTTCATACCATGGATGACACATTTTTTGAACATCAACCATATTATCCCAATTCTGTAATCCAGGGGGAGCATTATGATCTTGAATCACAAAATTGGGACTGCACTCCTGTTTTTCCTGTAGTAACTTTAAATCTATCATCTGAAAGTTCACTTGTACCATCTTCTGAGTCAACTCCCTTATCTACCCCTGAGCCTGAATTGCAAGTTTATTCACGAAGAGCGAGACAACCTGAGAGGACTGAGATACAATCTACACAAGTTCAGCAAAGCCAAGATCTAAACCAAAATCCTAGTGTCCTTGAAATAGCACACAAGATGTCAGAAGATGATAGACCCATTGCTGTAAGGAAAGGTGTTCGCTCATGTACTCAACATCCCCTACAATATCACTTATCTTACACTAATTTGTCGCCATGTTTCAAAGCTTTTGTGACTTCACTAGATCAGATACAAACTCTCAACTCAGTTCAAGAAGCTCTACAGAGACCTGAATGGAAAGCTACCACCCTAGAAGAGCTACATGCTCTGGAGAAAAATGGGACTTGGATCCTTACAGACTTACCCCAGGTAAACGCACAGTTGGTTGTAAATGGATTTTTTCGACCAAAAACAAACCAGATGGTAATATAGAGCGGTTAAAAGCTCATCTTGTGGCTAAAGGATTCACCCAAGCTTATGGGATTGACTATCAGGAAACGTTTGCTCCAGTTGCCAAGTTGAATACTATTAGGGTACTTCTCTCTATTGCGACAAATCTAGATTGGCCCATGTTTCAACTAGATGTAAAGAATGCATTTCTAAATGGCGATTTAGTAGAGGAAGTGTACATGGCCATACCTCCTAGATTTGAGAACAGGTATACTAGAGGAAAGATATGGACTAAAATAGTCACCTCGGGCTTGGTTTCACAAATTTACAGTTATGTTAAAACAAGATGGCTATACTCAATGTCAATCCGACCATACCCTCTTCATCAAGCTTTT

mRNA sequence

ATGCTCACATCACACATTCCAAAATATTTTTGGGGTGAAGCTGTTCTCACTGCGACCTATCTCATAAACCGATTGCCCTCCCGTACTCTCAAATTCAGCACACCCTTGCAAAGTTTACTGACGATCTATCCTACATCTTATCTGGTGTCCCAACTACCATTAAAAATATTTGGATGTACTGCATTTGTTCATGTATATCCTCAGAATTGTAGTAAACTTGATGCGAGATCCATAAAATGTGTCTTCCTTGGATACTCATCAAATCAAAAAGGATATAAGTGTTATCATCCTCCATTTCAAAAATTCTTTCATACCATGGATGACACATTTTTTGAACATCAACCATATTATCCCAATTCTGTAATCCAGGGGGAGCATTATGATCTTGAATCACAAAATTGGGACTGCACTCCTGTTTTTCCTGTAGTAACTTTAAATCTATCATCTGAAAGTTCACTTGTACCATCTTCTGAGTCAACTCCCTTATCTACCCCTGAGCCTGAATTGCAAGTTTATTCACGAAGAGCGAGACAACCTGAGAGGACTGAGATACAATCTACACAAGTTCAGCAAAGCCAAGATCTAAACCAAAATCCTAGTGTCCTTGAAATAGCACACAAGATGTCAGAAGATGATAGACCCATTGCTGTAAGGAAAGGTGTTCGCTCATGTACTCAACATCCCCTACAATATCACTTATCTTACACTAATTTGTCGCCATGTTTCAAAGCTTTTGTGACTTCACTAGATCAGATACAAACTCTCAACTCAGTTCAAGAAGCTCTACAGAGACCTGAATGGAAAGCTACCACCCTAGAAGAGCTACATGCTCTGGAGAAAAATGGGACTTGGATCCTTACAGACTTACCCCAGGTAAACGCACAGTTGGTTGTAAATGGATTTTTTCGACCAAAAACAAACCAGATGGTAATATAG

Coding sequence (CDS)

ATGCTCACATCACACATTCCAAAATATTTTTGGGGTGAAGCTGTTCTCACTGCGACCTATCTCATAAACCGATTGCCCTCCCGTACTCTCAAATTCAGCACACCCTTGCAAAGTTTACTGACGATCTATCCTACATCTTATCTGGTGTCCCAACTACCATTAAAAATATTTGGATGTACTGCATTTGTTCATGTATATCCTCAGAATTGTAGTAAACTTGATGCGAGATCCATAAAATGTGTCTTCCTTGGATACTCATCAAATCAAAAAGGATATAAGTGTTATCATCCTCCATTTCAAAAATTCTTTCATACCATGGATGACACATTTTTTGAACATCAACCATATTATCCCAATTCTGTAATCCAGGGGGAGCATTATGATCTTGAATCACAAAATTGGGACTGCACTCCTGTTTTTCCTGTAGTAACTTTAAATCTATCATCTGAAAGTTCACTTGTACCATCTTCTGAGTCAACTCCCTTATCTACCCCTGAGCCTGAATTGCAAGTTTATTCACGAAGAGCGAGACAACCTGAGAGGACTGAGATACAATCTACACAAGTTCAGCAAAGCCAAGATCTAAACCAAAATCCTAGTGTCCTTGAAATAGCACACAAGATGTCAGAAGATGATAGACCCATTGCTGTAAGGAAAGGTGTTCGCTCATGTACTCAACATCCCCTACAATATCACTTATCTTACACTAATTTGTCGCCATGTTTCAAAGCTTTTGTGACTTCACTAGATCAGATACAAACTCTCAACTCAGTTCAAGAAGCTCTACAGAGACCTGAATGGAAAGCTACCACCCTAGAAGAGCTACATGCTCTGGAGAAAAATGGGACTTGGATCCTTACAGACTTACCCCAGGTAAACGCACAGTTGGTTGTAAATGGATTTTTTCGACCAAAAACAAACCAGATGGTAATATAG

Protein sequence

MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCTAFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNSVIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPELQVYSRRARQPERTEIQSTQVQQSQDLNQNPSVLEIAHKMSEDDRPIAVRKGVRSCTQHPLQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTDLPQVNAQLVVNGFFRPKTNQMVI

Homology

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BLAST of MC03g_new0173.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-18
Identity = 88/304 (28.95%), Postives = 129/304 (42.43%), Query Frame = 0


Query: 6   IPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCTAFVHV 65
           +PK FWGEAV TA YLINR PS  L F  P +       T+  VS   LK+FGC AF HV
Sbjct: 605 LPKSFWGEAVQTACYLINRSPSVPLAFEIPERVW-----TNKEVSYSHLKVFGCRAFAHV 664

Query: 66  YPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNSVIQGE 125
             +  +KLD +SI C+F+GY   + GY+ + P  +K   + D  F               
Sbjct: 665 PKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF--------------- 724

Query: 126 HYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPELQVYSRRARQPERTEIQ 185
               ES+      +   V   +      +PS+ + P S  E      S +  QP     Q
Sbjct: 725 ---RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSA-ESTTDEVSEQGEQPGEVIEQ 784

Query: 186 STQVQQSQDLNQNPSVLEIAHK-MSEDDRPIAVRKGVRSCTQHPLQYHLSYTNLSPCFKA 245
             Q+ +  +  ++P+  E  H+ +   +RP      V S      +Y L   +  P    
Sbjct: 785 GEQLDEGVEEVEHPTQGEEQHQPLRRSERP-----RVESRRYPSTEYVLISDDREP---- 844

Query: 246 FVTSLDQIQTLNSVQEALQRPE---WKATTLEELHALEKNGTWILTDLPQVNAQLVVNGF 305
                       S++E L  PE         EE+ +L+KNGT+ L +LP+    L     
Sbjct: 845 -----------ESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWV 864

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BLAST of MC03g_new0173.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-13
Identity = 57/175 (32.57%), Postives = 81/175 (46.29%), Query Frame = 0


Query: 2   LTSH--IPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGC 61
           L SH  +PK +W  A   A YLINRLP+  L+  +P Q L    P +Y      LK+FGC
Sbjct: 618 LLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFG-QPPNY----EKLKVFGC 677

Query: 62  TAFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEH-----Q 121
             +  + P N  KL+ +S +C F+GYS  Q  Y C H P  + + +    F E       
Sbjct: 678 ACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFST 737

Query: 122 PYYPNSVIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPL--STPEP 168
             +  S  Q +  D  + NW      P   L L +   L P  +++P   S+P P
Sbjct: 738 TNFGVSTSQEQRSD-SAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSP 786

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BLAST of MC03g_new0173.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.2e-13
Identity = 72/242 (29.75%), Postives = 102/242 (42.15%), Query Frame = 0


Query: 2   LTSH--IPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGC 61
           L SH  IPK +W  A   A YLINRLP+  L+  +P Q L    P     +   L++FGC
Sbjct: 639 LLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSP-----NYDKLRVFGC 698

Query: 62  TAFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHT----MDDTFFEHQP 121
             +  + P N  KLD +S +CVFLGYS  Q  Y C H    + + +     D+  F    
Sbjct: 699 ACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSN 758

Query: 122 YY-----------PNSVIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPL-- 181
           Y             +S +   H  L ++    TPV P  + +    ++  PSS S P   
Sbjct: 759 YLATLSPVQEQRRESSCVWSPHTTLPTR----TPVLPAPSCSDPHHAATPPSSPSAPFRN 818

Query: 182 -----------------STPEPEL--QVYSRRARQPERTEIQ---STQVQQSQDLNQNPS 203
                            S+PEP    Q   +   QP +T+ Q   S    Q+   N++PS
Sbjct: 819 SQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPS 871

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BLAST of MC03g_new0173.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 6   IPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCTAFVHV 65
           + K FWGEAVLTATYLINR+PSR L  S+     +      YL     L++FG T +VH+
Sbjct: 605 LDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKH---LRVFGATVYVHI 664

Query: 66  YPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMD 108
             +   K D +S K +F+GY  N  G+K +    +KF    D
Sbjct: 665 KNKQ-GKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARD 700

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BLAST of MC03g_new0173.1 vs. NCBI nr
Match: XP_042986936.1 (uncharacterized protein LOC122315184 isoform X3 [Carya illinoinensis])

HSP 1 Score: 276 bits (707), Expect = 1.72e-84
Identity = 156/343 (45.48%), Postives = 207/343 (60.35%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M ++H+PK+FWGEA+LTA YLINR+PSR L F  P Q LL  +P + L+S +P K+FGC+
Sbjct: 279 MFSTHVPKFFWGEAILTAAYLINRMPSRILNFQNPCQILLESFPNTRLISTIPFKVFGCS 338

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
           AFVHV+ Q+  KLD R++KC+FLGYS  QKGYKCY P  ++F+H+MD TFFE QPY+P S
Sbjct: 339 AFVHVHQQHRDKLDPRALKCIFLGYSPTQKGYKCYSPVTKQFYHSMDVTFFEQQPYFPKS 398

Query: 121 VIQGE-HYDLESQNWDC--TPVF------PVVTLNLSS--------------------ES 180
            IQGE ++  E Q WD   +P F      P  +LN  S                    ++
Sbjct: 399 DIQGETNFIQEYQLWDIEESPHFSPNSDQPCPSLNHESIPPQNLFLESPYFLESPPQDQT 458

Query: 181 SLVPSSESTPLSTPEPELQVYSRRARQPERTEIQSTQVQQSQDLNQNPSVLEIA------ 240
           +  P +  T  ST   EL  YSRR +  +  E Q   ++Q+Q+ + +P   E        
Sbjct: 459 NNPPQNLDTIQSTKNDELITYSRRRKNQKEME-QEASLEQTQESDPSPRSSEDPSGNYNP 518

Query: 241 HKMSEDDRPIAVRKGVRSCTQHPLQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRP 300
               + D PIAVRKGVRSCT+HP+   +SY  LSP FKAFV +LD IQ  N++QEAL  P
Sbjct: 519 ETNDDSDFPIAVRKGVRSCTKHPIYTFVSYEGLSPKFKAFVANLDNIQVPNNIQEALSSP 578

Query: 301 EWKATTLEELHALEKNGTWILTDLPQVNAQLVVNGFFRPKTNQ 308
           EWK+   EE+HALEKNGTW + +LP     +     F  K N+
Sbjct: 579 EWKSAVYEEIHALEKNGTWEILELPAGKRPVGCKWIFTVKYNE 620

[Close]

BLAST of MC03g_new0173.1 vs. NCBI nr
Match: RVW97655.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 276 bits (705), Expect = 4.18e-83
Identity = 153/343 (44.61%), Postives = 214/343 (62.39%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M+ S++PK  WGEAVLTATYLINR+PSR L+F TP Q LL  YP++ ++S +P+K+FGCT
Sbjct: 1   MIASNVPKQLWGEAVLTATYLINRMPSRILQFKTPCQILLAAYPSARIISSIPIKVFGCT 60

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH++    SKLD  + KC+FLGYS NQKGYKCY P  +KF+ +MD TFFE+QP+YP +
Sbjct: 61  TFVHIHKSQRSKLDPTATKCIFLGYSPNQKGYKCYFPTTKKFYTSMDVTFFENQPFYPKT 120

Query: 121 VIQGEHYDL-ESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPE------------- 180
            IQGE++   E Q W+       ++      SSL P +++T LS PE             
Sbjct: 121 AIQGENWSTDEFQCWETE-----ISTTSPLSSSLPPQTDTT-LSDPENNSLDVPSVTLEL 180

Query: 181 -----PELQVYSRR------ARQPERTEIQSTQVQQSQDLNQNPSV-----------LEI 240
                 E+ VY RR       + P++    ST  +Q+Q+L+Q+PS            L  
Sbjct: 181 TTQGSKEVIVYFRRNLKEKPEKPPQKEPEDSTPPEQNQELDQDPSNPNSQLGNTIYDLNS 240

Query: 241 AHKMSEDDRPIAVRKGVRSCTQHPLQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQR 300
           ++ + + D+PIA+RKGVRSCTQHP+  H+SY  LS  F+AF+TSL+  +  +++QEALQ+
Sbjct: 241 SNDLDDLDQPIALRKGVRSCTQHPISNHVSYGKLSHNFQAFITSLEDDRIPSNIQEALQQ 300

Query: 301 PEWKATTLEELHALEKNGTWILTDLPQVNAQLVVNGFFRPKTN 307
           PEWK    EE+ ALEKNGTW +++LP+    +     F  K N
Sbjct: 301 PEWKTVVQEEIQALEKNGTWEISELPEGKRPVGCKWIFTMKHN 337

[Close]

BLAST of MC03g_new0173.1 vs. NCBI nr
Match: RVW43030.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 267 bits (683), Expect = 5.17e-83
Identity = 147/303 (48.51%), Postives = 194/303 (64.03%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M + ++PK FWG+AVLTA YLINR+P R LKF TP Q+LL  +PT+ L+S +P KIFGC+
Sbjct: 100 MFSMNVPKLFWGQAVLTAAYLINRMPYRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCS 159

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH+  Q+ SKLD RS+KC+FLGYSSNQKGYKCY P  +KF+++MD TFFE QPYYP +
Sbjct: 160 VFVHINQQHRSKLDPRSLKCIFLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKN 219

Query: 121 VIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPE--LQVYSRRARQ 180
            IQGE+   E Q WD         L   SESS+   +   P S  +PE  + ++ +   Q
Sbjct: 220 DIQGENSTQEYQFWD---------LESFSESSITTENHIPPESFNQPESIVDLWDKEHIQ 279

Query: 181 PERTEIQSTQVQQSQDLNQNPSVL--------EIAHKMSED--DRPIAVRKGVRSCTQHP 240
            E  E   +Q     +   NPS L         +  ++  D  + PIA RKGVRSC QHP
Sbjct: 280 EETEERALSQQTHEAEPGPNPSKLPGNNAPDGSVDSELENDILNMPIAWRKGVRSCIQHP 339

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 291
           +   +SY  LSP F+AF +S+ +IQ   ++QEA + P+WKA   EE+ ALEKNGTW +TD
Sbjct: 340 IGNFISYDKLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITD 393

[Close]

BLAST of MC03g_new0173.1 vs. NCBI nr
Match: RVW60619.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 276 bits (707), Expect = 1.10e-81
Identity = 147/319 (46.08%), Postives = 210/319 (65.83%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M+ S++PK  WGEAVLTATYLINR+PSR L+F TP Q LL  YP++ ++S + +K+FGCT
Sbjct: 311 MIASNVPKQLWGEAVLTATYLINRMPSRILQFKTPCQILLAAYPSARIISSILIKVFGCT 370

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
           AFVH++    SKLD  + KC+FLGYS NQKGYKCY P  +KF+ +MD TFFE+QP+YP +
Sbjct: 371 AFVHIHKSQHSKLDPTATKCIFLGYSPNQKGYKCYSPTTKKFYTSMDVTFFENQPFYPKT 430

Query: 121 VIQGEHYDL-ESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPELQVYSRRARQP 180
            IQGE++   E Q W+       ++      SSL P +++T LS PE    +  +  + P
Sbjct: 431 AIQGENWSTDEFQFWETK-----ISTTSPLSSSLPPQTDTT-LSVPENN-SLDEKPEKPP 490

Query: 181 ERTEIQSTQVQQSQDLNQNPSV-----------LEIAHKMSEDDRPIAVRKGVRSCTQHP 240
           ++    +T  +Q+Q+L+Q+PS            L  ++ + + D+PIA+RKGVRSCTQHP
Sbjct: 491 QKEPKDNTPPEQNQELDQDPSNPNSQPGNTIYDLNSSNDLDDLDQPIALRKGVRSCTQHP 550

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 300
           +  H+SY  LS  F+AF+TSL+  +  +++QEALQ+PEWK    EE+ ALEKNGTW +++
Sbjct: 551 ISNHVSYGKLSQNFQAFITSLEDDRIPSNIQEALQQPEWKTAVQEEIQALEKNGTWEISE 610

Query: 301 LPQVNAQLVVNGFFRPKTN 307
           LP+    +     F  K N
Sbjct: 611 LPEGKRPVGCKWIFTVKHN 622

[Close]

BLAST of MC03g_new0173.1 vs. NCBI nr
Match: CAN82505.1 (hypothetical protein VITISV_039312 [Vitis vinifera])

HSP 1 Score: 262 bits (670), Expect = 1.42e-81
Identity = 145/303 (47.85%), Postives = 192/303 (63.37%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M + ++PK FWG+AVLT  YLINR+  R LKF TP Q+LL  +PT+ L+S +P KIFGC+
Sbjct: 66  MFSMNVPKLFWGQAVLTTAYLINRMSYRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCS 125

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH+  Q+ SKLD RS+KC+FLGYSSNQKGYKCY P  +KF+++MD TFFE QPYYP +
Sbjct: 126 VFVHINQQHRSKLDPRSLKCIFLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKN 185

Query: 121 VIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPE--LQVYSRRARQ 180
            IQGE+   E Q WD         L   SESS+   +   P S  +PE  + ++ +   Q
Sbjct: 186 DIQGENSTQEYQFWD---------LESFSESSITTENHIPPESFNQPESIVDLWDKEHIQ 245

Query: 181 PERTEIQSTQVQQSQDLNQNPSVL--------EIAHKMSED--DRPIAVRKGVRSCTQHP 240
            E  E   +Q     +   NPS L         +  ++  D  + PIA RKGVRSC QHP
Sbjct: 246 EETEERALSQQTHEAEPGPNPSKLPGNNAPDGSVDSELENDILNMPIAWRKGVRSCXQHP 305

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 291
           +   +SY  LSP F+AF +S+ +IQ   ++QEA + P+WKA   EE+ ALEKNGTW +TD
Sbjct: 306 IGNFISYDKLSPTFRAFTSSITEIQVPXNIQEAFKYPKWKAAVDEEVRALEKNGTWEITD 359

[Close]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL
Match: A0A438IM12 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1566 PE=4 SV=1)

HSP 1 Score: 276 bits (705), Expect = 2.02e-83
Identity = 153/343 (44.61%), Postives = 214/343 (62.39%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M+ S++PK  WGEAVLTATYLINR+PSR L+F TP Q LL  YP++ ++S +P+K+FGCT
Sbjct: 1   MIASNVPKQLWGEAVLTATYLINRMPSRILQFKTPCQILLAAYPSARIISSIPIKVFGCT 60

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH++    SKLD  + KC+FLGYS NQKGYKCY P  +KF+ +MD TFFE+QP+YP +
Sbjct: 61  TFVHIHKSQRSKLDPTATKCIFLGYSPNQKGYKCYFPTTKKFYTSMDVTFFENQPFYPKT 120

Query: 121 VIQGEHYDL-ESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPE------------- 180
            IQGE++   E Q W+       ++      SSL P +++T LS PE             
Sbjct: 121 AIQGENWSTDEFQCWETE-----ISTTSPLSSSLPPQTDTT-LSDPENNSLDVPSVTLEL 180

Query: 181 -----PELQVYSRR------ARQPERTEIQSTQVQQSQDLNQNPSV-----------LEI 240
                 E+ VY RR       + P++    ST  +Q+Q+L+Q+PS            L  
Sbjct: 181 TTQGSKEVIVYFRRNLKEKPEKPPQKEPEDSTPPEQNQELDQDPSNPNSQLGNTIYDLNS 240

Query: 241 AHKMSEDDRPIAVRKGVRSCTQHPLQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQR 300
           ++ + + D+PIA+RKGVRSCTQHP+  H+SY  LS  F+AF+TSL+  +  +++QEALQ+
Sbjct: 241 SNDLDDLDQPIALRKGVRSCTQHPISNHVSYGKLSHNFQAFITSLEDDRIPSNIQEALQQ 300

Query: 301 PEWKATTLEELHALEKNGTWILTDLPQVNAQLVVNGFFRPKTN 307
           PEWK    EE+ ALEKNGTW +++LP+    +     F  K N
Sbjct: 301 PEWKTVVQEEIQALEKNGTWEISELPEGKRPVGCKWIFTMKHN 337

[Close]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL
Match: A0A438E5W5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4019 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 2.50e-83
Identity = 147/303 (48.51%), Postives = 194/303 (64.03%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M + ++PK FWG+AVLTA YLINR+P R LKF TP Q+LL  +PT+ L+S +P KIFGC+
Sbjct: 100 MFSMNVPKLFWGQAVLTAAYLINRMPYRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCS 159

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH+  Q+ SKLD RS+KC+FLGYSSNQKGYKCY P  +KF+++MD TFFE QPYYP +
Sbjct: 160 VFVHINQQHRSKLDPRSLKCIFLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKN 219

Query: 121 VIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPE--LQVYSRRARQ 180
            IQGE+   E Q WD         L   SESS+   +   P S  +PE  + ++ +   Q
Sbjct: 220 DIQGENSTQEYQFWD---------LESFSESSITTENHIPPESFNQPESIVDLWDKEHIQ 279

Query: 181 PERTEIQSTQVQQSQDLNQNPSVL--------EIAHKMSED--DRPIAVRKGVRSCTQHP 240
            E  E   +Q     +   NPS L         +  ++  D  + PIA RKGVRSC QHP
Sbjct: 280 EETEERALSQQTHEAEPGPNPSKLPGNNAPDGSVDSELENDILNMPIAWRKGVRSCIQHP 339

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 291
           +   +SY  LSP F+AF +S+ +IQ   ++QEA + P+WKA   EE+ ALEKNGTW +TD
Sbjct: 340 IGNFISYDKLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITD 393

[Close]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL
Match: A0A438FKT6 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_360 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 5.31e-82
Identity = 147/319 (46.08%), Postives = 210/319 (65.83%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M+ S++PK  WGEAVLTATYLINR+PSR L+F TP Q LL  YP++ ++S + +K+FGCT
Sbjct: 311 MIASNVPKQLWGEAVLTATYLINRMPSRILQFKTPCQILLAAYPSARIISSILIKVFGCT 370

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
           AFVH++    SKLD  + KC+FLGYS NQKGYKCY P  +KF+ +MD TFFE+QP+YP +
Sbjct: 371 AFVHIHKSQHSKLDPTATKCIFLGYSPNQKGYKCYSPTTKKFYTSMDVTFFENQPFYPKT 430

Query: 121 VIQGEHYDL-ESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPELQVYSRRARQP 180
            IQGE++   E Q W+       ++      SSL P +++T LS PE    +  +  + P
Sbjct: 431 AIQGENWSTDEFQFWETK-----ISTTSPLSSSLPPQTDTT-LSVPENN-SLDEKPEKPP 490

Query: 181 ERTEIQSTQVQQSQDLNQNPSV-----------LEIAHKMSEDDRPIAVRKGVRSCTQHP 240
           ++    +T  +Q+Q+L+Q+PS            L  ++ + + D+PIA+RKGVRSCTQHP
Sbjct: 491 QKEPKDNTPPEQNQELDQDPSNPNSQPGNTIYDLNSSNDLDDLDQPIALRKGVRSCTQHP 550

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 300
           +  H+SY  LS  F+AF+TSL+  +  +++QEALQ+PEWK    EE+ ALEKNGTW +++
Sbjct: 551 ISNHVSYGKLSQNFQAFITSLEDDRIPSNIQEALQQPEWKTAVQEEIQALEKNGTWEISE 610

Query: 301 LPQVNAQLVVNGFFRPKTN 307
           LP+    +     F  K N
Sbjct: 611 LPEGKRPVGCKWIFTVKHN 622

[Close]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL
Match: A5AR74 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_039312 PE=4 SV=1)

HSP 1 Score: 262 bits (670), Expect = 6.88e-82
Identity = 145/303 (47.85%), Postives = 192/303 (63.37%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M + ++PK FWG+AVLT  YLINR+  R LKF TP Q+LL  +PT+ L+S +P KIFGC+
Sbjct: 66  MFSMNVPKLFWGQAVLTTAYLINRMSYRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCS 125

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH+  Q+ SKLD RS+KC+FLGYSSNQKGYKCY P  +KF+++MD TFFE QPYYP +
Sbjct: 126 VFVHINQQHRSKLDPRSLKCIFLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKN 185

Query: 121 VIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPE--LQVYSRRARQ 180
            IQGE+   E Q WD         L   SESS+   +   P S  +PE  + ++ +   Q
Sbjct: 186 DIQGENSTQEYQFWD---------LESFSESSITTENHIPPESFNQPESIVDLWDKEHIQ 245

Query: 181 PERTEIQSTQVQQSQDLNQNPSVL--------EIAHKMSED--DRPIAVRKGVRSCTQHP 240
            E  E   +Q     +   NPS L         +  ++  D  + PIA RKGVRSC QHP
Sbjct: 246 EETEERALSQQTHEAEPGPNPSKLPGNNAPDGSVDSELENDILNMPIAWRKGVRSCXQHP 305

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 291
           +   +SY  LSP F+AF +S+ +IQ   ++QEA + P+WKA   EE+ ALEKNGTW +TD
Sbjct: 306 IGNFISYDKLSPTFRAFTSSITEIQVPXNIQEAFKYPKWKAAVDEEVRALEKNGTWEITD 359

[Close]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL
Match: A5C243 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_019561 PE=4 SV=1)

HSP 1 Score: 270 bits (689), Expect = 1.69e-81
Identity = 148/303 (48.84%), Postives = 195/303 (64.36%), Query Frame = 0


Query: 1   MLTSHIPKYFWGEAVLTATYLINRLPSRTLKFSTPLQSLLTIYPTSYLVSQLPLKIFGCT 60
           M + ++PK FWG+AVLTA YLINR+PSR LKF TP Q+LL  +PT+ L+S +P KIFGC+
Sbjct: 66  MFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTLLKSFPTTRLISTVPPKIFGCS 125

Query: 61  AFVHVYPQNCSKLDARSIKCVFLGYSSNQKGYKCYHPPFQKFFHTMDDTFFEHQPYYPNS 120
            FVH+  Q+ SKLD RS+KC+FLGYSSNQKGYKCY P  +KF+++MD TFFE QPYYP +
Sbjct: 126 VFVHINQQHRSKLDPRSLKCIFLGYSSNQKGYKCYSPVTRKFYNSMDVTFFETQPYYPKN 185

Query: 121 VIQGEHYDLESQNWDCTPVFPVVTLNLSSESSLVPSSESTPLSTPEPE--LQVYSRRARQ 180
            IQGE+   E Q WD         L   SES +   +   P S  +PE  + ++ +   Q
Sbjct: 186 DIQGENSTQEYQFWD---------LESFSESPITTENHIPPESFNQPESIVDLWDKEHIQ 245

Query: 181 PERTEIQSTQVQQSQDLNQNPSVLE--------IAHKMSED--DRPIAVRKGVRSCTQHP 240
            E  E   +Q     +   NPS L         +  ++  D  + PIA RKGVRSCTQHP
Sbjct: 246 EETEERALSQQTHEAEPGPNPSKLPGNNAPDGTVDSELENDILNMPIAWRKGVRSCTQHP 305

Query: 241 LQYHLSYTNLSPCFKAFVTSLDQIQTLNSVQEALQRPEWKATTLEELHALEKNGTWILTD 291
           +   +SY  LSP F+AF +S+ +IQ   ++QEA + P+WKA   EE+ ALEKNGTW +TD
Sbjct: 306 IGNFISYDKLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAAVDEEVRALEKNGTWEITD 359

The following BLAST results are available for this feature:

BLAST of MC03g_new0173.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-18	28.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	7.0e-13	32.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	9.2e-13	29.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.5e-10	41.18	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of MC03g_new0173.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042986936.1	1.72e-84	45.48	uncharacterized protein LOC122315184 isoform X3 [Carya illinoinensis]	[more]
RVW97655.1	4.18e-83	44.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW43030.1	5.17e-83	48.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW60619.1	1.10e-81	46.08	Copia protein [Vitis vinifera]	[more]
CAN82505.1	1.42e-81	47.85	hypothetical protein VITISV_039312 [Vitis vinifera]	[more]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438IM12	2.02e-83	44.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E5W5	2.50e-83	48.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438FKT6	5.31e-82	46.08	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_360 PE=4 SV=1	[more]
A5AR74	6.88e-82	47.85	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A5C243	1.69e-81	48.84	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]

BLAST of MC03g_new0173.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC03g_new0173	MC03g_new0173	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC03g_new0173.1-cds	MC03g_new0173.1-cds-MC03:8060422..8061357	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC03g_new0173.1	MC03g_new0173.1-protein	polypeptide