MC02g1156.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1156.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PMD domain-containing protein
Location	MC02: 10066903 .. 10067283 (-)
Sequence length	381
RNA-Seq Expression	MC02g1156.1
Synteny	MC02g1156.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTGTCGGAGGCTACTTTCGGAAGGTGGAAGAAAAGTATAACACCATGTCTCACTCAATTTTCACGCAACTATCTTCAATAAGTAAGGATGACCAATTGAAACAAATGAAATCTAGTTTTGAGGAGGCATTACTAAGAGAAATTGAAATACTTGAGGAGAAGAATGCGATTCAACAACTACGAGTACAATCACTTCTTGAGGCGGAAGAATTAAAGACCAAGCTCAAAACTGCAAATGCTAAAACCGAGAGGCTTTCTAATTTAATCTTTGAGAAAAATGAGGACTTGAAACAACAAAGACTGGAGATTTCAAAATTGCGTAAGGAGATATACAATATTGAGAATACTATGATTATCAGTGATGCAAACATCAAGTCT

mRNA sequence

GAATTTGTCGGAGGCTACTTTCGGAAGGTGGAAGAAAAGTATAACACCATGTCTCACTCAATTTTCACGCAACTATCTTCAATAAGTAAGGATGACCAATTGAAACAAATGAAATCTAGTTTTGAGGAGGCATTACTAAGAGAAATTGAAATACTTGAGGAGAAGAATGCGATTCAACAACTACGAGTACAATCACTTCTTGAGGCGGAAGAATTAAAGACCAAGCTCAAAACTGCAAATGCTAAAACCGAGAGGCTTTCTAATTTAATCTTTGAGAAAAATGAGGACTTGAAACAACAAAGACTGGAGATTTCAAAATTGCGTAAGGAGATATACAATATTGAGAATACTATGATTATCAGTGATGCAAACATCAAGTCT

Coding sequence (CDS)

GAATTTGTCGGAGGCTACTTTCGGAAGGTGGAAGAAAAGTATAACACCATGTCTCACTCAATTTTCACGCAACTATCTTCAATAAGTAAGGATGACCAATTGAAACAAATGAAATCTAGTTTTGAGGAGGCATTACTAAGAGAAATTGAAATACTTGAGGAGAAGAATGCGATTCAACAACTACGAGTACAATCACTTCTTGAGGCGGAAGAATTAAAGACCAAGCTCAAAACTGCAAATGCTAAAACCGAGAGGCTTTCTAATTTAATCTTTGAGAAAAATGAGGACTTGAAACAACAAAGACTGGAGATTTCAAAATTGCGTAAGGAGATATACAATATTGAGAATACTATGATTATCAGTGATGCAAACATCAAGTCT

Protein sequence

EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQLRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMIISDANIKS

Homology

[Close]

BLAST of MC02g1156.1 vs. NCBI nr
Match: KAA0060431.1 (hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK18520.1 hypothetical protein E5676_scaffold119G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 1.75e-10
Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++V+  +N +  S   QL S  K  QL +  S+ EEAL    ++ E+ N IQ+
Sbjct: 344 EYLNSYLKRVDN-FNDVQSSYSAQLLSTDKARQLDEKTSAIEEALTLMEKLREDANVIQE 403

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             +Q  LE +EL+ +L++ NA++E+LS L  EK E + QQ LE++KL+ E+  +E T  I
Sbjct: 404 RAMQLSLEKKELERRLQSLNAESEQLSILSCEKIEAIYQQELEVAKLQDEVNTLEGTPAI 463

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 464 TEEVIEA 469

[Close]

BLAST of MC02g1156.1 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 4.79e-10
Identity = 45/127 (35.43%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++VE  +N +  S   QLSS  K  QL +  S+ +EAL    ++  +   IQ+
Sbjct: 803 EYLNSYLKRVEN-FNDVQSSYSAQLSSTDKACQLNEKTSAIKEALTLVKQLRGDAKVIQE 862

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             V+  LE +EL+ +L++ NA++E+LS L  EK E + QQ LE++KL+ E+  +E+T  I
Sbjct: 863 RTVELSLERKELEKRLQSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVTTLESTPAI 922

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 923 TEEAIET 928

[Close]

BLAST of MC02g1156.1 vs. NCBI nr
Match: KAA0057576.1 (hypothetical protein E6C27_scaffold497G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 5.61e-10
Identity = 44/127 (34.65%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++V+  +N +  S   QLSS  K  QL +  S+ +EAL    ++  +   IQ+
Sbjct: 116 EYLNSYLKRVDN-FNDVQSSYSAQLSSTDKARQLNEKTSAIKEALTLVKQLRGDAKVIQE 175

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             V+  LE +EL+ +L++ NA++E+LS L  EK E + QQ LE++KL+ E+  +E+T  I
Sbjct: 176 KTVELSLERKELEKRLQSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLESTPAI 235

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 236 TEEVIEA 241

[Close]

BLAST of MC02g1156.1 vs. NCBI nr
Match: TYK06376.1 (hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 7.30e-10
Identity = 44/127 (34.65%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++V+  +N +  S F QL S  K  QL +  S  +EAL    ++ E+   IQ+
Sbjct: 35  EYLNSYLKRVDN-FNDVQSSYFAQLLSTDKARQLNEKTSVIKEALTLVEQLREDVKVIQE 94

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
              +  LE +ELK +L++ NA++E+LS L  EK E + QQ L+I KL+ ++  +E+T  I
Sbjct: 95  RTAELSLERKELKKRLQSINAESEQLSILSCEKAEAIDQQELKIFKLQDKVNTLESTPAI 154

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 155 TEEAIEA 160

[Close]

BLAST of MC02g1156.1 vs. NCBI nr
Match: KAA0043403.1 (hypothetical protein E6C27_scaffold1639G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 9.57e-10
Identity = 43/127 (33.86%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++++  +N +  S   QL SI K  QL +  S+ EEAL    ++  +   IQ+
Sbjct: 208 EYLNSYLKRIDN-FNDVQSSYSAQLLSIDKARQLDEKTSAIEEALTLMEQLRGDAKVIQE 267

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             ++  LE +ELK +L++ NA++++LS L  EK E + QQ LE+ KL+ E+  +E T  I
Sbjct: 268 RTIELSLEKKELKRRLQSINAESQQLSILSCEKAEAIDQQELEVVKLQNEVNTLEGTSAI 327

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 328 TEEAIEA 333

[Close]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL
Match: A0A5A7V3X5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00140 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.45e-11
Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++V+  +N +  S   QL S  K  QL +  S+ EEAL    ++ E+ N IQ+
Sbjct: 344 EYLNSYLKRVDN-FNDVQSSYSAQLLSTDKARQLDEKTSAIEEALTLMEKLREDANVIQE 403

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             +Q  LE +EL+ +L++ NA++E+LS L  EK E + QQ LE++KL+ E+  +E T  I
Sbjct: 404 RAMQLSLEKKELERRLQSLNAESEQLSILSCEKIEAIYQQELEVAKLQDEVNTLEGTPAI 463

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 464 TEEVIEA 469

[Close]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.32e-10
Identity = 45/127 (35.43%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++VE  +N +  S   QLSS  K  QL +  S+ +EAL    ++  +   IQ+
Sbjct: 803 EYLNSYLKRVEN-FNDVQSSYSAQLSSTDKACQLNEKTSAIKEALTLVKQLRGDAKVIQE 862

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             V+  LE +EL+ +L++ NA++E+LS L  EK E + QQ LE++KL+ E+  +E+T  I
Sbjct: 863 RTVELSLERKELEKRLQSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVTTLESTPAI 922

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 923 TEEAIET 928

[Close]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL
Match: A0A5A7UTW5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00480 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.72e-10
Identity = 44/127 (34.65%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++V+  +N +  S   QLSS  K  QL +  S+ +EAL    ++  +   IQ+
Sbjct: 116 EYLNSYLKRVDN-FNDVQSSYSAQLSSTDKARQLNEKTSAIKEALTLVKQLRGDAKVIQE 175

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             V+  LE +EL+ +L++ NA++E+LS L  EK E + QQ LE++KL+ E+  +E+T  I
Sbjct: 176 KTVELSLERKELEKRLQSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLESTPAI 235

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 236 TEEVIEA 241

[Close]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL
Match: A0A5D3C7S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00680 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.54e-10
Identity = 44/127 (34.65%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++V+  +N +  S F QL S  K  QL +  S  +EAL    ++ E+   IQ+
Sbjct: 35  EYLNSYLKRVDN-FNDVQSSYFAQLLSTDKARQLNEKTSVIKEALTLVEQLREDVKVIQE 94

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
              +  LE +ELK +L++ NA++E+LS L  EK E + QQ L+I KL+ ++  +E+T  I
Sbjct: 95  RTAELSLERKELKKRLQSINAESEQLSILSCEKAEAIDQQELKIFKLQDKVNTLESTPAI 154

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 155 TEEAIEA 160

[Close]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL
Match: A0A5A7TJ15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00020 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.63e-10
Identity = 43/127 (33.86%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   EFVGGYFRKVEEKYNTMSHSIFTQLSSISKDDQLKQMKSSFEEALLREIEILEEKNAIQQ 60
           E++  Y ++++  +N +  S   QL SI K  QL +  S+ EEAL    ++  +   IQ+
Sbjct: 208 EYLNSYLKRIDN-FNDVQSSYSAQLLSIDKARQLDEKTSAIEEALTLMEQLRGDAKVIQE 267

Query: 61  LRVQSLLEAEELKTKLKTANAKTERLSNLIFEKNEDLKQQRLEISKLRKEIYNIENTMII 120
             ++  LE +ELK +L++ NA++++LS L  EK E + QQ LE+ KL+ E+  +E T  I
Sbjct: 268 RTIELSLEKKELKRRLQSINAESQQLSILSCEKAEAIDQQELEVVKLQNEVNTLEGTSAI 327

Query: 121 SDANIKS 127
           ++  I++
Sbjct: 328 TEEAIEA 333

The following BLAST results are available for this feature:

BLAST of MC02g1156.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g1156.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060431.1	1.75e-10	36.22	hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK1852...	[more]
KAA0053466.1	4.79e-10	35.43	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0057576.1	5.61e-10	34.65	hypothetical protein E6C27_scaffold497G00480 [Cucumis melo var. makuwa]	[more]
TYK06376.1	7.30e-10	34.65	hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa]	[more]
KAA0043403.1	9.57e-10	33.86	hypothetical protein E6C27_scaffold1639G00020 [Cucumis melo var. makuwa]	[more]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3X5	8.45e-11	36.22	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UGW6	2.32e-10	35.43	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UTW5	2.72e-10	34.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7S4	3.54e-10	34.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJ15	4.63e-10	33.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MC02g1156.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC02g1156	MC02g1156	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC02g1156.1-cds	MC02g1156.1-cds-MC02:10066903..10067283	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC02g1156.1	MC02g1156.1-protein	polypeptide