MC01g_new0427.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0427.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Zinc finger, RING/FYVE/PHD-type
Location	MC01: 17835583 .. 17837590 (-)
Sequence length	441
RNA-Seq Expression	MC01g_new0427.1
Synteny	MC01g_new0427.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAACACATGTATTGGACGGTGAAAATAACAGCCAGAGAAACAGGAATAATGACAACAAATTTTCATTTTAGTTTCTTTGGGCACCAACCAAGAATTACCGTTCGTTACTGAATTCATGGGCATGGCTAGATAAGAAGATGGATTGGTCTATTCTTTTGCCCCAGCCAAACCAGAAGCAGCCATGGATTACAGGACAAAAAAATTCCTGGAAAAATATCAGCCAAAATCTATAATCTTCTAGAGCAAGTTTCCAACAGGGTGGCCATTGGTGGTCCTGATAATGATGAAGAAGCAAGAAAGAAGAGAAAATAATACCCCATAAAGCCATGACAAAAGAAAGATAAAGAAGTTCAGAAAGGTATTCATTCAACCCAACAAATCATCGGTGAGACGAAAAATGCTTGAAACAAAGAGATCAATCCAAATTGGGGGACTGATTTTTGAGAGAAAAACAGAGGTGGATTGAAATTGCAGCAACAGCAAGCAAAACTCTGTACAGAGCTGATCAATTAAGTGGAGTCAGACTTCGGATTGGCTAATACTTTTGGTTAATTACATAGAAAAAGAGATGCAAAAAGTTGGGATTCGGTGAGATTACTATACAATAATACATTTGAAAGCGGAAATTTTCTTTTATGGGAAATGTTAATGCACTTTCTTTGTGAAAAGGCTTCTTATGCTAAAGAGATTGGCACTACTACTTGAATTTCCAGGATTGCTGACGCTACCGCCGCCGTCTCCATTGTTGTCGTATCCATGGCTACCGCCGCCGCCGCCGCCGCTGCCACCGTTACCGTTGCTGACGACCCCTACGGCACTCGTCTCATCGCTTCTACAGCTTAAATGGTTTCTGTAACCGATACACATGGGGACGTTTAAATTCAAAACTCTAACTCTCGAGGCGGAGGATGCGGCAGCGGCCTTGCTCCGGTGGGCGTCTGCGGGTTCTTTCCGGGGGATTTTTTCGGCATTGCGAGTCAGGGGTTCAAAGGTTTTGGCGGCGGATCCCCCGCGCCGGACCTGCCAGACCGGGCTGCTCCGGCCCAAATGGACGCCGGCCCGACTCGGGCTGCTCGGCCACTTCCTGGACTTGGATTCGCCGGCGGAGTTGCTGCGGGAACAAGGCGCACTGTTGACCTTCCGGGATCCGGGGCCGCCGGGGAACATTTTGGGCCGAGCGATCGCATTCCCGGCGGATCTGCTTCGCGAGAAAGGCCAAATGTTAATATTCAACTCCGCCGACGTAGCGCCATTCCCAGTCTTCTTCTCCTTCTTCTTCTCCCTCTCCTTCTCCTTCTCCTCCTGATTACTCGAAGCGGCGTTCTTCTTCTCGCCCTTCCTGAAAATGCTCCATCGCTTCGACGGGGTTAACGACAAAGAAGACGATTCCGTCGCATTAGGCATCAATTTCGCGCCGTCTCTGGGATCGGGTTCGAGGTCGTTAATTGGGGGTTCCGCGTCGGATTTAGGGTTCGGGTCAGTCGATGACTCAGAGGGGCCGTCGTTGTGGTGGGATAAGAGGTGAAGGGGAAGGAGAACGCCGTCGACGAAGAGCTCGTCGGCCGAGAGAAGATTGGGCTGAGGAAAAGAGGGGTTTCGAACCATCCAGAACTCGAACTCCGGCGAGGTTGGGGGAAAGCCGCCGCTCCTCCTTCCGCTGCTGCTCTGAGAGAGGGATGGAGACAGTGGATTCATTACTGGAGTCTCCATTGCGAGAGGGAAAGAGAAGAAATGTGAAGAAATAGCCGAGAATGGAGAAGATGGATGGTGGGAAGGTTCTTTATTTGGTTCGTAGTGGTGAGCTCAGAGTTTCAGAAAATGGGACCCTACAAAAAGTCCAATAAATAAATCAAAATAAAAACTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTGGGTACTCGATGAGGACGAAGCATGCTCTGCTCTGCCTAACCAATATTTTATTCGGTTTTTATGTTTTCCTTTTCTCAACACATTTTCTAAATTTATGTCCAAGA

mRNA sequence

ATGGGGACGTTTAAATTCAAAACTCTAACTCTCGAGGCGGAGGATGCGGCAGCGGCCTTGCTCCGGTGGGCGTCTGCGGGTTCTTTCCGGGGGATTTTTTCGGCATTGCGAGTCAGGGGTTCAAAGGTTTTGGCGGCGGATCCCCCGCGCCGGACCTGCCAGACCGGGCTGCTCCGGCCCAAATGGACGCCGGCCCGACTCGGGCTGCTCGGCCACTTCCTGGACTTGGATTCGCCGGCGGAGTTGCTGCGGGAACAAGGCGCACTGTTGACCTTCCGGGATCCGGGGCCGCCGGGGAACATTTTGGGCCGAGCGATCGCATTCCCGGCGGATCTGCTTCGCGAGAAAGGCCAAATGTTAATATTCAACTCCGCCGACGTAGCGCCATTCCCAGTCTTCTTCTCCTTCTTCTTCTCCCTCTCCTTCTCCTTCTCCTCCTGA

Coding sequence (CDS)

ATGGGGACGTTTAAATTCAAAACTCTAACTCTCGAGGCGGAGGATGCGGCAGCGGCCTTGCTCCGGTGGGCGTCTGCGGGTTCTTTCCGGGGGATTTTTTCGGCATTGCGAGTCAGGGGTTCAAAGGTTTTGGCGGCGGATCCCCCGCGCCGGACCTGCCAGACCGGGCTGCTCCGGCCCAAATGGACGCCGGCCCGACTCGGGCTGCTCGGCCACTTCCTGGACTTGGATTCGCCGGCGGAGTTGCTGCGGGAACAAGGCGCACTGTTGACCTTCCGGGATCCGGGGCCGCCGGGGAACATTTTGGGCCGAGCGATCGCATTCCCGGCGGATCTGCTTCGCGAGAAAGGCCAAATGTTAATATTCAACTCCGCCGACGTAGCGCCATTCCCAGTCTTCTTCTCCTTCTTCTTCTCCCTCTCCTTCTCCTTCTCCTCCTGA

Protein sequence

MGTFKFKTLTLEAEDAAAALLRWASAGSFRGIFSALRVRGSKVLAADPPRRTCQTGLLRPKWTPARLGLLGHFLDLDSPAELLREQGALLTFRDPGPPGNILGRAIAFPADLLREKGQMLIFNSADVAPFPVFFSFFFSLSFSFSS

Homology

[Close]

BLAST of MC01g_new0427.1 vs. NCBI nr
Match: KAF5472741.1 (hypothetical protein F2P56_009434 [Juglans regia])

HSP 1 Score: 167 bits (423), Expect = 4.82e-48
Identity = 95/149 (63.76%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MGTFKFKTLTLE--AEDAAAALLRWASAGSFRGIFSALRVRGSKVLAADPP-RRTCQTGL 60
           +GTF+FKT+     A   AA LLR  S  SF    SA R   S++   +PP RRTCQTGL
Sbjct: 3   IGTFRFKTVAFGPVAPLLAAVLLRRVSGASFLAALSAPRAMVSELFMLEPPPRRTCQTGL 62

Query: 61  LRPKWTPARLGLLGHFLDLDSPAELLREQGALLTFRDPGPPGNILGRAIAFPADLLREKG 120
           LRP+WTPAR GLLGHF DLDSPAELLRE GAL TF  PG PG  LGR  AFPADLLRE G
Sbjct: 63  LRPRWTPARPGLLGHFFDLDSPAELLREHGALFTFLVPGAPGPDLGRVPAFPADLLRENG 122

Query: 121 QMLIFNSADVAPFPVFFSFF-FSLSFSFS 145
           Q+L+FNSA++AP P F SF  F LSFSFS
Sbjct: 123 QILMFNSAELAPLPPFLSFSAFFLSFSFS 151

[Close]

BLAST of MC01g_new0427.1 vs. NCBI nr
Match: KVH96958.1 (Zinc finger, RING/FYVE/PHD-type, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 112 bits (280), Expect = 3.96e-26
Identity = 77/139 (55.40%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 9   LTLEAEDAAAALLRWASAGSF-RGIFSAL-RVRGSKVLAADPPRRTCQTGLLRPKWTPAR 68
           +T+ +  A   LLR  S  SF +  FSA  R + S  L  DP    C TGLLRP WTP R
Sbjct: 163 VTVASPPAVVFLLRRDSGFSFLKAPFSAATRTKLSCKLRPDPTLLICHTGLLRPTWTPPR 222

Query: 69  LGLLGHFLDLDSPAELLREQGALLTFRDPGPPGNILGRAIAFPADLLREKGQMLIFNSAD 128
            GLLGHFLDLDSPAELL EQGALLTFR       +L     FPADLLRE G   IF+SA 
Sbjct: 223 FGLLGHFLDLDSPAELLLEQGALLTFRLLAGDRGLLP---LFPADLLRENGHKFIFSSA- 282

Query: 129 VAPFPVFFSFFFSLSFSFS 145
             P P F SFFF   FSFS
Sbjct: 283 -IPVPPFLSFFF---FSFS 293

[Close]

BLAST of MC01g_new0427.1 vs. NCBI nr
Match: XP_028550834.1 (uncharacterized protein LOC114579662, partial [Dendrobium catenatum])

HSP 1 Score: 74.7 bits (182), Expect = 8.55e-13
Identity = 53/104 (50.96%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 41  SKVLAADPPRRTCQTGLLRPKWTPARLGLLGHFLDL-DSPAELLREQGALLTFRDPGPPG 100
           S +    P RR CQTGL R + TP R GL  H     DSP ELLREQGALLTFR    P 
Sbjct: 59  SSLWTGRPVRRICQTGLDRARCTPPRPGLAAHLRPPPDSPRELLREQGALLTFRPETDPI 118

Query: 101 NILGRAIAFPADLLREKGQMLIFNSADVAPFPVFFSFFFSLSFS 143
           +  GR    PAD LR KGQML            FF  FFS SFS
Sbjct: 119 D-RGRP---PADWLRVKGQMLRLMLRSALLLRSFFRKFFSWSFS 158

[Close]

BLAST of MC01g_new0427.1 vs. NCBI nr
Match: KAG0452594.1 (hypothetical protein HPP92_025258 [Vanilla planifolia])

HSP 1 Score: 63.2 bits (152), Expect = 1.37e-08
Identity = 43/105 (40.95%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 45  AADPPRR--TCQTGLLRPKWTPA-RLGLLGHFLDL-------------------DSPAEL 104
           +  PP R  +C TGL RP+W P  R GL  HF                      DSP EL
Sbjct: 25  SVSPPLRLLSCHTGLARPRWMPPERPGLGTHFRTAAAAAAAAEPATPAAVVGLEDSPREL 84

Query: 105 LREQGALLTFRDPGPPGNILGRAIAFPADLLREKGQMLIFNSADV 127
           LREQGALL FR    P    GR    PA+ L E GQ  + +SA V
Sbjct: 85  LREQGALLVFR----PATAAGRGRPVPAERLLENGQRWMLSSAAV 125

[Close]

BLAST of MC01g_new0427.1 vs. ExPASy TrEMBL
Match: A0A103XU96 (Zinc finger, RING/FYVE/PHD-type (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_000948 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.92e-26
Identity = 77/139 (55.40%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 9   LTLEAEDAAAALLRWASAGSF-RGIFSAL-RVRGSKVLAADPPRRTCQTGLLRPKWTPAR 68
           +T+ +  A   LLR  S  SF +  FSA  R + S  L  DP    C TGLLRP WTP R
Sbjct: 163 VTVASPPAVVFLLRRDSGFSFLKAPFSAATRTKLSCKLRPDPTLLICHTGLLRPTWTPPR 222

Query: 69  LGLLGHFLDLDSPAELLREQGALLTFRDPGPPGNILGRAIAFPADLLREKGQMLIFNSAD 128
            GLLGHFLDLDSPAELL EQGALLTFR       +L     FPADLLRE G   IF+SA 
Sbjct: 223 FGLLGHFLDLDSPAELLLEQGALLTFRLLAGDRGLLP---LFPADLLRENGHKFIFSSA- 282

Query: 129 VAPFPVFFSFFFSLSFSFS 145
             P P F SFFF   FSFS
Sbjct: 283 -IPVPPFLSFFF---FSFS 293

The following BLAST results are available for this feature:

BLAST of MC01g_new0427.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0427.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5472741.1	4.82e-48	63.76	hypothetical protein F2P56_009434 [Juglans regia]	[more]
KVH96958.1	3.96e-26	55.40	Zinc finger, RING/FYVE/PHD-type, partial [Cynara cardunculus var. scolymus]	[more]
XP_028550834.1	8.55e-13	50.96	uncharacterized protein LOC114579662, partial [Dendrobium catenatum]	[more]
KAG0452594.1	1.37e-08	40.95	hypothetical protein HPP92_025258 [Vanilla planifolia]	[more]

BLAST of MC01g_new0427.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A103XU96	1.92e-26	55.40	Zinc finger, RING/FYVE/PHD-type (Fragment) OS=Cynara cardunculus var. scolymus O...	[more]

BLAST of MC01g_new0427.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC01g_new0427	MC01g_new0427	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g_new0427.1-cds	MC01g_new0427.1-cds-MC01:17836282..17836722	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC01g_new0427.1	MC01g_new0427.1-protein	polypeptide