MC01g1548.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1548.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosomal protein L18a
Location	MC01: 19674314 .. 19676620 (-)
Sequence length	1049
RNA-Seq Expression	MC01g1548.1
Synteny	MC01g1548.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAATCAAACTCATGACCTGTTGAAATCCAAGTGTCTTAACCTACTGAGCTCTTCGGCGTTACTTTTTACTTTTAGATACTCATTTTTAAAACCAGTCATTATTATTACTGGTATAATAACAGAGTACACTTAAAAATAAAAAAGAAATTATCTCAAATAAAAAAAAATCAATTATAATAGAATAGGGCCTTGGGCCGATTGAACAATATATATAGAAGAGAGCAACTAGGGTTTTCGTTCCTGTCTCTTAGCCGCAGAAACCCTGCATCTCCGAGAAAGTACCAGGCGGACCGTCCAGAGCTCTAAACTCGTCGCAAATGGTTACTTTCAGGGTAAGCATTCCCACTCTGAGCTGCAATTGTCTCTTTATCTTTCTCCATTTTGAAGATTTGTTGAATAAGTGAACGGACATGAGATTCAAATCACTCTTTCTCTGCGTTTTTGTTGATTCGGTTCGATTTGGGGTTTCTTTTTGCAGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCTGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTTTGGGCGACTAACGAAGTCCGCGCTAAATCCAAGTTTTGGTGAGTTTTTTCGTGTTTTTGTTTGATCACATTGTTTGAAGAGGGTTACTATGTTTTTTGGTTTATCGATTAATAAAATCGATGCTCTACGCTTTCTTGATTTCACTGTTAGCTAAACCCTCCTTTGTTTGTCTTTCCTGCTCTGTGTTAGGTATTTTCTGCGGAAGCTGAAGAAAGTCAAGAAGAGCAACGGTCAGGTGCTCGCTATCAACGAGGTAATGTGTGTTTGTCTCCTGTCCTCCCAGTTGGAACTGTACTAGATTTAATTGCTTGGGGTTACACCCTTTTGTCTGATTATTGGTTTAGGTGATGTTATGTTGGCTCACAGGTGAATACATTGTTATTTTCCAAGAAAGAATAGAGGCATTAGTGTTGAACTATTCCCCTTTTCCTTGTAACCCGTTACTGTGATTCCAATTTTTTCTGAACGATTATAACTTCTTGTTCAGTGCTCGTTTCAGTTCCTTTGTTTATCTATACAACCTTTGTTCTTTGAATGTAATAGTGAAAACTTCCATAGGGTTTTGATTCTCTATCAGTGTTTGTTTGGTATGGCATCACCTTTAGTACTCGTGGAAGGATTGCTATTGTAGTGAATATTTCATGAACATTGAATGGTGCTCCACGTTATTGCTGAATAACTTATGGTGGATGAGGAATTGTGGGGGGTTTTTTTGTGTTTATTCACTCTTGTCACTTGTGAATGGTATTTGGATTAACTGTACACTCTCTGTTCTATTAACTTTATTGGATATTGGATATTTTATTGGTTAAAGATTTTTAATGGTTTTTGAAATGCAAATATTATGATATAAGGGAAAAGGAAGTATCTACTATGTAAATGAATGCTTTTGATCTATCTATATGGTGGACCATCTGGTGAGCTTAATACCAAAAGCCTTTGATGTTTCCTGGTTTGGGTCTTTGGGTGGGCGCGGGTGCCCCTGGGTATATCGGAGCAAAGCTTCGACTCCCAGTATAACTATTGATTCTTGCTGGAACAAAATTTGACATGATTGTGGTTCTTACTTCCAAGTTTTTTTTAATAAGCATTTACTTAACAGGGTTGAGTTTCTGACCTATTTCTGGTTTGCTAAATTTTATCATAACGCACTGAAACATCATTAGTTTTATTTTTTAGTTAGGCTGTTCTCATTGAATTGTCATTGTCTGTAGATCTTTGAGAAGAATCCAACAAAGATCAAGAACTATGGTATTTGGTTGCGCTACCAAAGTCGTACAGGATATCACAACATGTACAAGGAATACCGCGACACCACCTTAAATGGAGCGGTGGAGGCAATGTACAACGAAATGGCTTCTCGCCATAGGGTCAGGTATCCTTGCATCCAAATCATCAAGACTGCGACTGTCCCTGCAAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAGGACTGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAATTTTCTTGCTTTTTCAGGGAATGAGAAAAAATTTATCAGAGTTGTCTTATTTTGAAATCTATGGTAGAGACCTTCCTATCAGTGGATTCTTCAACGTTTATCTTCTTATTATGTAGTACCAGAGCCAGACATTAATTTTTGGGGTTTATTGCCATGTGTTTTTGTTTCTTATGGAACTATATGATCGGCCT

mRNA sequence

GAAAAAATCAAACTCATGACCTGTTGAAATCCAAGTGTCTTAACCTACTGAGCTCTTCGGCGTTACTTTTTACTTTTAGATACTCATTTTTAAAACCAGTCATTATTATTACTGGTATAATAACAGAGTACACTTAAAAATAAAAAAGAAATTATCTCAAATAAAAAAAAATCAATTATAATAGAATAGGGCCTTGGGCCGATTGAACAATATATATAGAAGAGAGCAACTAGGGTTTTCGTTCCTGTCTCTTAGCCGCAGAAACCCTGCATCTCCGAGAAAGTACCAGGCGGACCGTCCAGAGCTCTAAACTCGTCGCAAATGGTTACTTTCAGGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCTGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTTTGGGCGACTAACGAAGTCCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTCAAGAAGAGCAACGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAATCCAACAAAGATCAAGAACTATGGTATTTGGTTGCGCTACCAAAGTCGTACAGGATATCACAACATGTACAAGGAATACCGCGACACCACCTTAAATGGAGCGGTGGAGGCAATGTACAACGAAATGGCTTCTCGCCATAGGGTCAGGTATCCTTGCATCCAAATCATCAAGACTGCGACTGTCCCTGCAAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAGGACTGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAATTTTCTTGCTTTTTCAGGGAATGAGAAAAAATTTATCAGAGTTGTCTTATTTTGAAATCTATGGTAGAGACCTTCCTATCAGTGGATTCTTCAACGTTTATCTTCTTATTATGTAGTACCAGAGCCAGACATTAATTTTTGGGGTTTATTGCCATGTGTTTTTGTTTCTTATGGAACTATATGATCGGCCT

Coding sequence (CDS)

ATGGTTACTTTCAGGTTCCACCAATACCAGGTTGTGGGAAGGGCTCTCCCATCTGAAGCAGATGAGCATCCCAAGATTTACCGAATGAAGCTTTGGGCGACTAACGAAGTCCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCTGAAGAAAGTCAAGAAGAGCAACGGTCAGGTGCTCGCTATCAACGAGATCTTTGAGAAGAATCCAACAAAGATCAAGAACTATGGTATTTGGTTGCGCTACCAAAGTCGTACAGGATATCACAACATGTACAAGGAATACCGCGACACCACCTTAAATGGAGCGGTGGAGGCAATGTACAACGAAATGGCTTCTCGCCATAGGGTCAGGTATCCTTGCATCCAAATCATCAAGACTGCGACTGTCCCTGCAAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAGGACTGTTAGGCCACCCACCAGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAA

Protein sequence

MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRYPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM

Homology

[Close]

BLAST of MC01g1548.1 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.9e-93
Identity = 164/178 (92.13%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV R +RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-90
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFR VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-89
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRYPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MY EMASRHRVR+PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVFR VRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.6e-89
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV+R VRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-87
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVFR VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. NCBI nr
Match: XP_022146684.1 (60S ribosomal protein L18a-like [Momordica charantia])

HSP 1 Score: 363 bits (932), Expect = 1.05e-126
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. NCBI nr
Match: XP_038880985.1 (60S ribosomal protein L18a [Benincasa hispida])

HSP 1 Score: 361 bits (927), Expect = 6.07e-126
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. NCBI nr
Match: XP_022157842.1 (60S ribosomal protein L18a [Momordica charantia])

HSP 1 Score: 359 bits (922), Expect = 3.52e-125
Identity = 175/178 (98.31%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. NCBI nr
Match: XP_004134633.1 (60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Csa_003074 [Cucumis sativus])

HSP 1 Score: 358 bits (918), Expect = 1.43e-124
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. NCBI nr
Match: XP_023002909.1 (60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal protein L18a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026472.1 60S ribosomal protein L18a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 358 bits (918), Expect = 1.43e-124
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy TrEMBL
Match: A0A6J1CYS9 (60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111015828 PE=3 SV=1)

HSP 1 Score: 363 bits (932), Expect = 5.08e-127
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy TrEMBL
Match: A0A6J1DVK7 (60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111024455 PE=3 SV=1)

HSP 1 Score: 359 bits (922), Expect = 1.70e-125
Identity = 175/178 (98.31%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy TrEMBL
Match: A0A6J1KRT5 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1)

HSP 1 Score: 358 bits (918), Expect = 6.94e-125
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy TrEMBL
Match: A0A0A0KIJ4 (60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1)

HSP 1 Score: 358 bits (918), Expect = 6.94e-125
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVF+TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. ExPASy TrEMBL
Match: A0A6J1IM84 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111478686 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 9.85e-125
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 333.6 bits (854), Expect = 9.9e-92
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVFR VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-90
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRYPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MY EMASRHRVR+PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVFR VRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 323.9 bits (829), Expect = 7.9e-89
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVFR VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of MC01g1548.1 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 320.5 bits (820), Expect = 8.7e-88
Identity = 153/172 (88.95%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 7   HQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEI 66
           HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAINEI
Sbjct: 141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query: 67  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRYPCIQII 126
           FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVR+PCIQII
Sbjct: 201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query: 127 KTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 179
           KTATVPA LCKRESTKQFH+SKIKFPLVFR VRPPTRKLKTT+KA++PNLFM
Sbjct: 261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

The following BLAST results are available for this feature:

BLAST of MC01g1548.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ATF5	3.9e-93	92.13	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
P51418	1.4e-90	89.89	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
Q9LUD4	1.5e-89	90.29	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
Q943F3	2.6e-89	88.76	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
Q8L7K0	1.1e-87	87.08	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of MC01g1548.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146684.1	1.05e-126	100.00	60S ribosomal protein L18a-like [Momordica charantia]	[more]
XP_038880985.1	6.07e-126	99.44	60S ribosomal protein L18a [Benincasa hispida]	[more]
XP_022157842.1	3.52e-125	98.31	60S ribosomal protein L18a [Momordica charantia]	[more]
XP_004134633.1	1.43e-124	98.31	60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Cs...	[more]
XP_023002909.1	1.43e-124	98.31	60S ribosomal protein L18a-like [Cucurbita maxima] >KAG6594475.1 60S ribosomal p...	[more]

BLAST of MC01g1548.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYS9	5.08e-127	100.00	60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111015828 PE=3 S...	[more]
A0A6J1DVK7	1.70e-125	98.31	60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111024455 PE=3 S...	[more]
A0A6J1KRT5	6.94e-125	98.31	60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111496677 PE=3 SV=1	[more]
A0A0A0KIJ4	6.94e-125	98.31	60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1	[more]
A0A6J1IM84	9.85e-125	98.88	60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111478686 PE=3 SV=1	[more]

BLAST of MC01g1548.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34480.1	9.9e-92	89.89	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	1.1e-90	90.29	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	7.9e-89	87.08	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	8.7e-88	88.95	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.10		coord: 1..71 e-value: 3.3E-38 score: 131.3
None	No IPR available	GENE3D	3.10.20.10		coord: 72..147 e-value: 4.1E-42 score: 144.4
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 1..137 coord: 138..178
None	No IPR available	SUPERFAMILY	160374	RplX-like	coord: 71..146
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 e-value: 1.6E-54 score: 183.1
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 1..178 e-value: 6.3E-73 score: 241.9
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..137 coord: 138..178
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 6..69 score: 24.336386

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC01g1548	MC01g1548	gene

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g1548.1-utr3	MC01g1548.1-utr3-MC01:19674314..19674504	utr3

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g1548.1-cds	MC01g1548.1-cds-MC01:19674505..19674846	CDS
MC01g1548.1-cds	MC01g1548.1-cds-MC01:19675808..19675871	CDS
MC01g1548.1-cds	MC01g1548.1-cds-MC01:19676023..19676138	CDS
MC01g1548.1-cds	MC01g1548.1-cds-MC01:19676285..19676299	CDS

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g1548.1-utr5	MC01g1548.1-utr5-MC01:19676300..19676620	utr5

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC01g1548.1	MC01g1548.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0042788	polysomal ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding