MC01g1533.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1533.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	MC01: 19602157 .. 19603085 (-)
Sequence length	924
RNA-Seq Expression	MC01g1533.1
Synteny	MC01g1533.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATATAGATACCAATGGATAAGAATCTATTGCCTCTGCCCACCATTTAAACTCCCCAAACCCACACTTCTTTCCCACCACAGAAACCAACAGCCCATTCAAAATCACAACTTTCTCTCTCTCTAGCCCCACCAATGGCTGCTTCCACCATGGCTCTCTCCTCCCCATCCCTCGCCGGCAAGGCCGTGAAGCTCTCCCCCTCCGCCCCTGAGCTTCAGGGCAATGGAAGAGTCAGCATGAGGAAATCCGTCTCCAAGCCAGTTTCCTCCGGCAGCCCCTGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACTGGAGAATTCCCCGGTGACTACGGCTGGGACACTGCTGGCCTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCTAGATGGGCCATGCTTGGGGCTCTTGGTTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGGGTGAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGCGAGGGTGGGCTCGACTATTTGGGTAACCCTAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCATCTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGTGGTCCCCTCGGTGAGGTGACCGACCCGATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCATTTGCTGAATTGAAAGTGAAGGAGCTCAAGAACGGAAGGTTGGCCATGTTCTCCATGTTTGGGTTCTTCGTTCAGGCCATTGTGACTGGAAAGGGTCCATTGGAGAACTTGGCAGACCATCTTGCAGACCCAGTTAACAACAACGCCTGGGCCTACGCCACAAACTTTGTTCCCGGAAAG

mRNA sequence

AGATATAGATACCAATGGATAAGAATCTATTGCCTCTGCCCACCATTTAAACTCCCCAAACCCACACTTCTTTCCCACCACAGAAACCAACAGCCCATTCAAAATCACAACTTTCTCTCTGCCCCACCAATGGCTGCTTCCACCATGGCTCTCTCCTCCCCATCCCTCGCCGGCAAGGCCGTGAAGCTCTCCCCCTCCGCCCCTGAGCTTCAGGGCAATGGAAGAGTCAGCATGAGGAAATCCGTCTCCAAGCCAGTTTCCTCCGGCAGCCCCTGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACTGGAGAATTCCCCGGTGACTACGGCTGGGACACTGCTGGCCTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCTAGATGGGCCATGCTTGGGGCTCTTGGTTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGGGTGAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGCGAGGGTGGGCTCGACTATTTGGGTAACCCTAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCATCTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGTGGTCCCCTCGGTGAGGTGACCGACCCGATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCATTTGCTGAATTGAAAGTGAAGGAGCTCAAGAACGGAAGGTTGGCCATGTTCTCCATGTTTGGGTTCTTCGTTCAGGCCATTGTGACTGGAAAGGGTCCATTGGAGAACTTGGCAGACCATCTTGCAGACCCAGTTAACAACAACGCCTGGGCCTACGCCACAAACTTTGTTCCCGGAAAG

Coding sequence (CDS)

AGATATAGATACCAATGGATAAGAATCTATTGCCTCTGCCCACCATTTAAACTCCCCAAACCCACACTTCTTTCCCACCACAGAAACCAACAGCCCATTCAAAATCACAACTTTCTCTCTGCCCCACCAATGGCTGCTTCCACCATGGCTCTCTCCTCCCCATCCCTCGCCGGCAAGGCCGTGAAGCTCTCCCCCTCCGCCCCTGAGCTTCAGGGCAATGGAAGAGTCAGCATGAGGAAATCCGTCTCCAAGCCAGTTTCCTCCGGCAGCCCCTGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACTGGAGAATTCCCCGGTGACTACGGCTGGGACACTGCTGGCCTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCTAGATGGGCCATGCTTGGGGCTCTTGGTTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGGGTGAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGCGAGGGTGGGCTCGACTATTTGGGTAACCCTAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCATCTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGTGGTCCCCTCGGTGAGGTGACCGACCCGATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCATTTGCTGAATTGAAAGTGAAGGAGCTCAAGAACGGAAGGTTGGCCATGTTCTCCATGTTTGGGTTCTTCGTTCAGGCCATTGTGACTGGAAAGGGTCCATTGGAGAACTTGGCAGACCATCTTGCAGACCCAGTTAACAACAACGCCTGGGCCTACGCCACAAACTTTGTTCCCGGAAAG

Protein sequence

RYRYQWIRIYCLCPPFKLPKPTLLSHHRNQQPIQNHNFLSAPPMAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK

Homology

[Close]

BLAST of MC01g1533.1 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 4.5e-145
Identity = 245/265 (92.45%), Postives = 258/265 (97.36%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAA+TMALSSPS AG+AVKLSPSAPE+ GNGRVSMRK+V+KPV+S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 309
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. ExPASy Swiss-Prot
Match: P09756 (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 5.9e-145
Identity = 252/264 (95.45%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 45  AASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGPF 104
           AAS+MALSSPSLAGKAVKL PSAPE+   GRVSMRK+V+K VSSGSPWYGPDRVKYLGPF
Sbjct: 3   AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPF 62

Query: 105 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 164
           SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN
Sbjct: 63  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122

Query: 165 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPL 224
           GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QV+LMGAVEGYRIAGGPL
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 182

Query: 225 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 284
           GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 183 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 285 LADHLADPVNNNAWAYATNFVPGK 309
           LADHLA PVNNNAWAYATNFVPGK
Sbjct: 243 LADHLAGPVNNNAWAYATNFVPGK 263

[Close]

BLAST of MC01g1533.1 vs. ExPASy Swiss-Prot
Match: P08221 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 9.4e-143
Identity = 242/255 (94.90%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 54  PSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGPFSGEPPSYLT 113
           P+LAG+AVKLSP+APE+QGN + +MRK+ SK VSSGSPWYGPDRVKYLGPFSGEPPSYLT
Sbjct: 1   PTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLT 60

Query: 114 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 173
           GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW
Sbjct: 61  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 120

Query: 174 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYP 233
           FKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGPLGEVTDPIYP
Sbjct: 121 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180

Query: 234 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 293
           GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct: 181 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 240

Query: 294 NNNAWAYATNFVPGK 309
           NNNAWAYATNFVPGK
Sbjct: 241 NNNAWAYATNFVPGK 255

[Close]

BLAST of MC01g1533.1 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 1.6e-142
Identity = 245/267 (91.76%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVS--KPVSSGSPWYGPDRVKYL 103
           MAASTMALSSPS AGKAVKLSPS+ E+ GNG+V+MRK+ S  K VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 104 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 163
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 164 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG 223
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 224 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 283
           GPLGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 284 LENLADHLADPVNNNAWAYATNFVPGK 309
           LENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of MC01g1533.1 vs. ExPASy Swiss-Prot
Match: P07370 (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB1B PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 6.1e-142
Identity = 241/265 (90.94%), Postives = 254/265 (95.85%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAA+TMALSSPS AG+AVKLSPSA E+ GNGR++MRK+V+K   S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 309
           NLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. NCBI nr
Match: XP_038882053.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 528 bits (1361), Expect = 1.84e-188
Identity = 259/265 (97.74%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSP+APE+QGNGR+SMRK+ SK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRISMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. NCBI nr
Match: XP_038882052.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 527 bits (1358), Expect = 5.27e-188
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSP+ PE+QGNGRVSMRK+ SK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. NCBI nr
Match: XP_022142169.1 (chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia])

HSP 1 Score: 525 bits (1352), Expect = 4.33e-187
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKL+PS+PEL GNGRVSMRK VSK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. NCBI nr
Match: XP_021904725.1 (chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 light-harvesting chlorophyll a/b-binding protein [Carica papaya])

HSP 1 Score: 524 bits (1350), Expect = 8.73e-187
Identity = 256/265 (96.60%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSPSAPEL GNGRVSMRK+ SK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPSAPELMGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. NCBI nr
Match: XP_008439658.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0052560.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK13266.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 523 bits (1348), Expect = 1.76e-186
Identity = 254/265 (95.85%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSP+APE+QG GR++MRK+ +KPVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLSDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. ExPASy TrEMBL
Match: A0A6J1CKT5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012353 PE=3 SV=1)

HSP 1 Score: 525 bits (1352), Expect = 2.10e-187
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKL+PS+PEL GNGRVSMRK VSK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. ExPASy TrEMBL
Match: A0A6M3WGX2 (Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1.1 PE=3 SV=1)

HSP 1 Score: 524 bits (1350), Expect = 4.23e-187
Identity = 256/265 (96.60%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSPSAPEL GNGRVSMRK+ SK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPSAPELMGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. ExPASy TrEMBL
Match: A0A5A7UBM9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008840 PE=3 SV=1)

HSP 1 Score: 523 bits (1348), Expect = 8.53e-187
Identity = 254/265 (95.85%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSP+APE+QG GR++MRK+ +KPVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLSDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. ExPASy TrEMBL
Match: A0A1S3AZW8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484385 PE=3 SV=1)

HSP 1 Score: 523 bits (1348), Expect = 8.53e-187
Identity = 254/265 (95.85%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKLSP+APE+QG GR++MRK+ +KPVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLSDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. ExPASy TrEMBL
Match: A0A5D3DAQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00370 PE=3 SV=1)

HSP 1 Score: 522 bits (1344), Expect = 3.47e-186
Identity = 257/265 (96.98%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSPSLAGKAVKL+PS+PEL GN RV+MRKS +K VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 223
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 224 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 283
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 284 NLADHLADPVNNNAWAYATNFVPGK 308
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MC01g1533.1 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 488.0 bits (1255), Expect = 5.5e-138
Identity = 237/267 (88.76%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVS-SGSPWYGPDRVKYLG 103
           MAASTMALSSP+ AGKAVKLSP+A E+ G+GRV+MRK+V+KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 104 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 163
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 164 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 223
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 224 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 283
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 284 LENLADHLADPVNNNAWAYATNFVPGK 309
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of MC01g1533.1 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 486.5 bits (1251), Expect = 1.6e-137
Identity = 235/266 (88.35%), Postives = 250/266 (93.98%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGP 103
           MAASTMALSSP+L GKAVKLSP+A E+ G GR++MRK+      SGSPWYG DRVKYLGP
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 104 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 163
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120

Query: 164 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG-G 223
           NGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG G
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180

Query: 224 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 283
           PLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 284 ENLADHLADPVNNNAWAYATNFVPGK 309
           ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of MC01g1533.1 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 486.1 bits (1250), Expect = 2.1e-137
Identity = 236/267 (88.39%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVS-SGSPWYGPDRVKYLG 103
           MAASTMALSSP+ AGKAV LSP+A E+ G+GRV+MRK+V+KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 104 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 163
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 164 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 223
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 224 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 283
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 284 LENLADHLADPVNNNAWAYATNFVPGK 309
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of MC01g1533.1 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 486.1 bits (1250), Expect = 2.1e-137
Identity = 236/267 (88.39%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVS-SGSPWYGPDRVKYLG 103
           MAASTMALSSP+ AGKAV LSP+A E+ G+GRV+MRK+V+KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 104 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 163
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 164 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 223
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 224 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 283
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 284 LENLADHLADPVNNNAWAYATNFVPGK 309
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of MC01g1533.1 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 481.5 bits (1238), Expect = 5.1e-136
Identity = 235/267 (88.01%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 44  MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVS-SGSPWYGPDRVKYLG 103
           MA+STMALSSP+ AGKAVK  P+A ++ G+GRV+MRK+V+KP   SGSPWYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 104 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 163
           PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 164 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG- 223
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWA+QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 224 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 283
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 284 LENLADHLADPVNNNAWAYATNFVPGK 309
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of MC01g1533.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27493	4.5e-145	92.45	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P09756	5.9e-145	95.45	Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 ...	[more]
P08221	9.4e-143	94.90	Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cuc...	[more]
P27495	1.6e-142	91.76	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P07370	6.1e-142	90.94	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=408...	[more]

BLAST of MC01g1533.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882053.1	1.84e-188	97.74	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_038882052.1	5.27e-188	97.74	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_022142169.1	4.33e-187	97.74	chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia]	[more]
XP_021904725.1	8.73e-187	96.60	chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 ligh...	[more]
XP_008439658.1	1.76e-186	95.85	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >...	[more]

BLAST of MC01g1533.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKT5	2.10e-187	97.74	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6M3WGX2	4.23e-187	96.60	Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1...	[more]
A0A5A7UBM9	8.53e-187	95.85	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3AZW8	8.53e-187	95.85	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3DAQ5	3.47e-186	96.98	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of MC01g1533.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	5.5e-138	88.76	chlorophyll A/B binding protein 1	[more]
AT2G34430.1	1.6e-137	88.35	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT1G29910.1	2.1e-137	88.39	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	2.1e-137	88.39	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	5.1e-136	88.01	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 108..274 e-value: 3.2E-49 score: 167.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 99..301 e-value: 1.5E-90 score: 304.5
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 44..308
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 44..308
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 91..305

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC01g1533	MC01g1533	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g1533.1-cds	MC01g1533.1-cds-MC01:19602157..19602960	CDS
MC01g1533.1-cds	MC01g1533.1-cds-MC01:19602966..19603085	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC01g1533.1	MC01g1533.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding