MC01g1347.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1347.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	actin-related protein 8-like
Location	MC01: 18128964 .. 18129734 (-)
Sequence length	543
RNA-Seq Expression	MC01g1347.1
Synteny	MC01g1347.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGATCTTCGAGCCAACGAAAGGAAGAGGGTTCACGATCGAAGTGGGTTTCTTCGACACCGTTTTGGAGATCAAAGAGAAGATTCAGAAATACCACCGCATCCCCATCCCCAAACAAACCCTAATCTTTAATGGCCACGTCCTTCAAGACGACCGCGACGTCGAATTCTGCGAAATCCTCCAAAACTCCCGCATCAAACTCATCGTTGCGCCATCCGATCACAACAACAGCAGCAGCAACAATAATAACAATAATAATAATAATGCTGCCGCTGCTGCTTCTGTCAAGATCGAAACTCCCAATTCTCCAATTTCTCCTTCCCCAAATTCCAACAATAAAATGATCCACCATCTCCAATCCCAATTCCCCATCGAGATCGACCCCACCAAAGATCAGATTATTATGGAATCCGCGGTGGTCCCTCTAAACGAGCTGTCCGACAACAATTCGGAGATTGAGGTGGTCTCGGCCGCCACGTCGGCGACGGCGGGCTCCACAGGGTCGTCGAAGAAGTTGAAAGTGATGGTGAAGCCGAAATGTGGGTCACAGAAGATACCGATGGAAGTGAACGCGTCTGACAACGTGGGGGAGCTGAAGAAGGAGCTGCAGAAGCTGCAGCAGAGACTCCATTTTCATCTCCCACAAGAGGGCTTCTTCTTCATTTACGACCGTGACGTCATGGACGAGGACCGCTCCTTCCGCTGGCATGGCGTCGCCCACGGCGACACCATCGAGATCTTCAATGGCAGTGTTACCGGCGGATCT

mRNA sequence

ATGGATGTGATCTTCGAGCCAACGAAAGGAAGAGGGTTCACGATCGAAGTGGGTTTCTTCGACACCGTTTTGGAGATCAAAGAGAAGATTCAGAAATACCACCGCATCCCCATCCCCAAACAAACCCTAATCTTTAATGGCCACGTCCTTCAAGACGACCGCGACGTCGAATTCTGCGAAATCCTCCAAAACTCCCGCATCAAACTCATCGTTGCGCCATCCGATCACAACAACAGCAGCAGCAACAATAATAACAATAATAATAATAATGCTGCCGGGTCGTCGAAGAAGTTGAAAGTGATGGTGAAGCCGAAATGTGGGTCACAGAAGATACCGATGGAAGTGAACGCGTCTGACAACGTGGGGGAGCTGAAGAAGGAGCTGCAGAAGCTGCAGCAGAGACTCCATTTTCATCTCCCACAAGAGGGCTTCTTCTTCATTTACGACCGTGACGTCATGGACGAGGACCGCTCCTTCCGCTGGCATGGCGTCGCCCACGGCGACACCATCGAGATCTTCAATGGCAGTGTTACCGGCGGATCT

Coding sequence (CDS)

ATGGATGTGATCTTCGAGCCAACGAAAGGAAGAGGGTTCACGATCGAAGTGGGTTTCTTCGACACCGTTTTGGAGATCAAAGAGAAGATTCAGAAATACCACCGCATCCCCATCCCCAAACAAACCCTAATCTTTAATGGCCACGTCCTTCAAGACGACCGCGACGTCGAATTCTGCGAAATCCTCCAAAACTCCCGCATCAAACTCATCGTTGCGCCATCCGATCACAACAACAGCAGCAGCAACAATAATAACAATAATAATAATAATGCTGCCGGGTCGTCGAAGAAGTTGAAAGTGATGGTGAAGCCGAAATGTGGGTCACAGAAGATACCGATGGAAGTGAACGCGTCTGACAACGTGGGGGAGCTGAAGAAGGAGCTGCAGAAGCTGCAGCAGAGACTCCATTTTCATCTCCCACAAGAGGGCTTCTTCTTCATTTACGACCGTGACGTCATGGACGAGGACCGCTCCTTCCGCTGGCATGGCGTCGCCCACGGCGACACCATCGAGATCTTCAATGGCAGTGTTACCGGCGGATCT

Protein sequence

MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCEILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

Homology

[Close]

BLAST of MC01g1347.1 vs. ExPASy Swiss-Prot
Match: Q9ZT95 (Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14
Identity = 73/260 (28.08%), Postives = 106/260 (40.77%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQ--------- 60
           M+V  +   G  F+I + F +TVLEIKEKI+K   IP+ KQ L  +G  L+         
Sbjct: 1   MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60

Query: 61  ------------------------------DDRDVEFCEILQNS---------------- 120
                                         DD+  EFC I  +S                
Sbjct: 61  ILFESRLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSESKKITRVMARRVHNI 120

Query: 121 -------------------------RIKLIVAPSDHNNSSSNNNNNNNNNAAGSSKKLK- 173
                                    R   +V P++  ++S        ++ +   KK+K 
Sbjct: 121 YSSLPAYSLDELLGPKYSATVAVGGRTNQVVQPTEQASTSGTAKEVLRDSDSPVEKKIKT 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy Swiss-Prot
Match: Q9ZQZ6 (Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=7SL2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.1e-13
Identity = 75/259 (28.96%), Postives = 107/259 (41.31%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQ--------- 60
           M+V  +   G  F+I + F +TVL+IKEKI+K   IP+ KQ L  +G  L+         
Sbjct: 1   MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60

Query: 61  -----------------------------DDRDVEFCEILQNS---RIKLIVAPSDHNNS 120
                                        DD+  EFC I  +S   ++  ++A   HN  
Sbjct: 61  ILFESLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSESKKLTRVMARRVHNVY 120

Query: 121 SS-----------------------NNNNNNNNNAAGSS---------------KKLK-- 173
           SS                        N        A +S               KK+K  
Sbjct: 121 SSLPAYSLDELLGPKYSATVTVGGRTNQVVQTTEQASTSGTAKEVLRDSDSPVEKKIKTN 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy Swiss-Prot
Match: Q58G87 (Polyubiquitin 3 OS=Oryza sativa subsp. japonica OX=39947 GN=UBQ3 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 41/143 (28.67%), Postives = 64/143 (44.76%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           M +  +   G+  T+EV F DT+  +K KIQ    IP  +Q LIF G  L+D R +    
Sbjct: 1   MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAGSSKKLKVMVKPKCGSQKIPMEVNASDN 120
           I + S + L++                     G    +++ VK   G + I +EV +SD 
Sbjct: 61  IQKESTLHLVL------------------RLRGG---MQIFVKTLTG-KTITLEVESSDT 120

Query: 121 VGELKKELQKL------QQRLHF 138
           +  +K ++Q        QQRL F
Sbjct: 121 IDNVKAKIQDKEGIPPDQQRLIF 121

[Close]

BLAST of MC01g1347.1 vs. ExPASy Swiss-Prot
Match: P59669 (Polyubiquitin OS=Geodia cydonium OX=6047 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 42/143 (29.37%), Postives = 63/143 (44.06%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           M +  +   G+  T+EV   DT+  +K KIQ    IP  +Q LIF G  L+D R +    
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAGSSKKLKVMVKPKCGSQKIPMEVNASDN 120
           I + S + L+V                     G    +++ VK   G + I +EV ASD 
Sbjct: 289 IQKESTLHLVV------------------RLRGG---MQIFVKTLTG-KTITLEVEASDT 348

Query: 121 VGELKKELQKL------QQRLHF 138
           +  +K ++Q        QQRL F
Sbjct: 349 IENVKAKIQDKEGIPPDQQRLIF 349

[Close]

BLAST of MC01g1347.1 vs. ExPASy Swiss-Prot
Match: P0CG70 (Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=ubi PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.0e-05
Identity = 40/143 (27.97%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           M +  +   G+  T+EV   DT+  +K+KIQ    IP  +Q LIF G  L+D R +    
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAGSSKKLKVMVKPKCGSQKIPMEVNASDN 120
           I + S + L++                     G    +++ VK   G + I +EV +SD 
Sbjct: 61  IQKESTLHLVL------------------RLRGG---MQIFVKTLTG-KTITLEVESSDT 120

Query: 121 VGELKKELQKL------QQRLHF 138
           +  +K+++Q        QQRL F
Sbjct: 121 IDNVKQKIQDKEGIPPDQQRLIF 121

[Close]

BLAST of MC01g1347.1 vs. NCBI nr
Match: XP_022142282.1 (actin-related protein 8-like [Momordica charantia])

HSP 1 Score: 330 bits (847), Expect = 1.71e-112
Identity = 181/257 (70.43%), Postives = 181/257 (70.43%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE
Sbjct: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAA---------------------------- 120
           ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAA                            
Sbjct: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAAAASVKIETPNSPISPSPNSNNKMIHHL 120

Query: 121 ------------------------------------------------GSSKKLKVMVKP 180
                                                           GSSKKLKVMVKP
Sbjct: 121 QSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKP 180

[Close]

BLAST of MC01g1347.1 vs. NCBI nr
Match: XP_008439960.1 (PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo])

HSP 1 Score: 267 bits (682), Expect = 2.98e-88
Identity = 139/198 (70.20%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVI  P +G  F IEVG+FDTVLEIKEKI+KYH IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVILVPEQGDTFGIEVGYFDTVLEIKEKIEKYHGIPIPKQTLIFNGRILQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSD--------------HN---NSSSNNNNNNNNNAAGSSKKLKVMVK 120
           ILQ+SRI+L+VA S+              HN   + SS+++  +   +  +S KLKVMVK
Sbjct: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHHPPSGTTSTKNSNKLKVMVK 120

Query: 121 PKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHG 180
           PKCGS KIPMEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFIYDRDVMDEDRSFRWHG
Sbjct: 121 PKCGSSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG 180

[Close]

BLAST of MC01g1347.1 vs. NCBI nr
Match: XP_004134970.1 (ubiquitin domain-containing protein 7SL RNA1 [Cucumis sativus] >KAE8647664.1 hypothetical protein Csa_002851 [Cucumis sativus])

HSP 1 Score: 263 bits (673), Expect = 6.76e-87
Identity = 138/204 (67.65%), Postives = 153/204 (75.00%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVI  P KG  F IEVG+FDTVLEIKEKI+KY  IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVA-----------------------PSDHNNSSSNNNNNNNNNAAGSSKK 120
           ILQ+SRI+L+VA                       PS H+  S   +  N+N       K
Sbjct: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHPQSGTTSTKNSN-------K 120

Query: 121 LKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDR 180
           LKVMVKPKCG+ KIPMEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFIYDRDVMDEDR
Sbjct: 121 LKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDR 180

[Close]

BLAST of MC01g1347.1 vs. NCBI nr
Match: XP_038881479.1 (ubiquitin domain-containing protein 7SL RNA1-like [Benincasa hispida])

HSP 1 Score: 262 bits (670), Expect = 3.43e-86
Identity = 142/214 (66.36%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVIF P +G  F IEVGFFDTVLEIKEKI+KYH IPIPKQ+LIFNG +LQD RDVEFCE
Sbjct: 1   MDVIFVPEQGETFGIEVGFFDTVLEIKEKIEKYHGIPIPKQSLIFNGRILQDHRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSD-------------HNN------------------SSSNNNNNNNN 120
           ILQ+SRI+L+VA S+              NN                  +SS NNNNNN+
Sbjct: 61  ILQHSRIQLVVANSELSAQSEIGRLIMKQNNILPDPPPPHQPPQPQKEITSSKNNNNNNS 120

Query: 121 NAAGSSK--KLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFI 180
           ++  ++   KLKVMVKPK G+ KI MEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFI
Sbjct: 121 SSINNNNYNKLKVMVKPKSGNSKIAMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFI 180

[Close]

BLAST of MC01g1347.1 vs. NCBI nr
Match: XP_022950206.1 (biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata])

HSP 1 Score: 262 bits (669), Expect = 1.51e-85
Identity = 151/248 (60.89%), Postives = 161/248 (64.92%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDV+F P KG  F IEVGFFDTVLEIKEKIQKYH IPIPKQTLIFNGHVLQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNN-------------------------NAA--- 120
           ILQ+SRI+L+VA    NNS S    + N+                         NAA   
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNAASPT 120

Query: 121 --------------------------------------GSSK-KLKVMVKPKCGSQKIPM 180
                                                 GSSK KLKVMV+PK G+ KIPM
Sbjct: 121 ELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSSKNKLKVMVQPKFGNSKIPM 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy TrEMBL
Match: A0A6J1CMB8 (actin-related protein 8-like OS=Momordica charantia OX=3673 GN=LOC111012442 PE=4 SV=1)

HSP 1 Score: 330 bits (847), Expect = 8.26e-113
Identity = 181/257 (70.43%), Postives = 181/257 (70.43%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE
Sbjct: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAA---------------------------- 120
           ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAA                            
Sbjct: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAAAASVKIETPNSPISPSPNSNNKMIHHL 120

Query: 121 ------------------------------------------------GSSKKLKVMVKP 180
                                                           GSSKKLKVMVKP
Sbjct: 121 QSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKP 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy TrEMBL
Match: A0A1S3AZZ9 (uncharacterized protein LOC103484590 OS=Cucumis melo OX=3656 GN=LOC103484590 PE=4 SV=1)

HSP 1 Score: 267 bits (682), Expect = 1.44e-88
Identity = 139/198 (70.20%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVI  P +G  F IEVG+FDTVLEIKEKI+KYH IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVILVPEQGDTFGIEVGYFDTVLEIKEKIEKYHGIPIPKQTLIFNGRILQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSD--------------HN---NSSSNNNNNNNNNAAGSSKKLKVMVK 120
           ILQ+SRI+L+VA S+              HN   + SS+++  +   +  +S KLKVMVK
Sbjct: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHHPPSGTTSTKNSNKLKVMVK 120

Query: 121 PKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHG 180
           PKCGS KIPMEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFIYDRDVMDEDRSFRWHG
Sbjct: 121 PKCGSSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy TrEMBL
Match: A0A6J1GE65 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 GN=LOC111453369 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 7.33e-86
Identity = 151/248 (60.89%), Postives = 161/248 (64.92%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDV+F P KG  F IEVGFFDTVLEIKEKIQKYH IPIPKQTLIFNGHVLQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNN-------------------------NAA--- 120
           ILQ+SRI+L+VA    NNS S    + N+                         NAA   
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNAASPT 120

Query: 121 --------------------------------------GSSK-KLKVMVKPKCGSQKIPM 180
                                                 GSSK KLKVMV+PK G+ KIPM
Sbjct: 121 ELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSSKNKLKVMVQPKFGNSKIPM 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy TrEMBL
Match: A0A6J1IPZ4 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=LOC111478395 PE=4 SV=1)

HSP 1 Score: 257 bits (656), Expect = 9.01e-84
Identity = 150/256 (58.59%), Postives = 163/256 (63.67%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDV+F P KG  F IEVGFFDTVLEIKEKIQKYH IPIPKQTLIFNGHVLQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQNSRIKLIVAPSDHNNSSSNNN-------NNN----------------------NNNA 120
           ILQ+SRI+L+VA    NNS S +        N++                       +NA
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQSQPQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNA 120

Query: 121 A---------------------------------------------GSSK-KLKVMVKPK 180
           +                                             GSSK KLKVMV+PK
Sbjct: 121 SPTELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAALGMTTPPPQPGSSKNKLKVMVQPK 180

[Close]

BLAST of MC01g1347.1 vs. ExPASy TrEMBL
Match: A0A6P4PD81 (UV excision repair protein rhp23-like isoform X2 OS=Gossypium arboreum OX=29729 GN=LOC108482765 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 4.50e-81
Identity = 133/211 (63.03%), Postives = 155/211 (73.46%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDVIFE  KG+ F+IEVGFFDTVLEIKEKI KYH IPIP QTLIFNG+VLQDDRDVE+CE
Sbjct: 1   MDVIFETQKGKPFSIEVGFFDTVLEIKEKIHKYHGIPIPHQTLIFNGNVLQDDRDVEYCE 60

Query: 61  ILQNSRIKLIVA-----------------------PSDHNNSSSNNNNNNNNNAAGSS-- 120
           ILQNSRI+L+V+                       PS   N+  N+N  ++N    S   
Sbjct: 61  ILQNSRIQLLVSSDSDTSNSTKQPQPNAAAADHQLPSPAKNAQLNSNTPSSNTVVPSETD 120

Query: 121 -----KKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDR 180
                KKLK++V PKCG++KIP+EVNA+DNV EL+KELQKL QRL FHLPQEG+FFIY +
Sbjct: 121 VNDNPKKLKLLVLPKCGTKKIPVEVNATDNVSELRKELQKLHQRLQFHLPQEGYFFIYKQ 180

[Close]

BLAST of MC01g1347.1 vs. TAIR 10
Match: AT4G05230.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.8e-54
Identity = 115/210 (54.76%), Postives = 144/210 (68.57%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDV FE   G  F IE+G++DTVLEIK+KI+KY RIP+ KQTL+F G+VLQD  D+E C 
Sbjct: 1   MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCV 60

Query: 61  ILQNSRIKLIVAPSDHNNS------------------SSN-----------NNNNNNNNA 120
           IL +SRI+L ++  D + +                  +SN           +NNNNNNN 
Sbjct: 61  ILNHSRIQLSISSPDQSRNNIQVFKTEQFPQSNSTEQTSNGHHESTVMIPMSNNNNNNN- 120

Query: 121 AGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRD 180
               KKL+VMV PK G++KIP++VNA DNVGEL+KEL K+QQR    LPQEG+FFIY ++
Sbjct: 121 ---PKKLRVMVLPKSGTRKIPVDVNAGDNVGELRKELAKIQQRFQLSLPQEGYFFIYKQN 180

Query: 181 VMDEDRSFRWHGVAHGDTIEIFNGSVTGGS 182
           VMDE+RSFRWH V  GDTIEIFNGSV+GGS
Sbjct: 181 VMDENRSFRWHRVDQGDTIEIFNGSVSGGS 206

[Close]

BLAST of MC01g1347.1 vs. TAIR 10
Match: AT4G05260.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 79/256 (30.86%), Postives = 114/256 (44.53%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           MDV FE   GR F IE+G++DTVLEIK+KI+KY RIP+P QTL F G+ L+D  D+  C+
Sbjct: 1   MDVYFETQNGRKFCIELGYWDTVLEIKKKIEKYQRIPVPNQTLFF-GNALEDHLDIGQCK 60

Query: 61  ILQNSRIKLIVAPSDHNNSSS------------------------------------NNN 120
           ILQNS + L V P  ++N+                                       ++
Sbjct: 61  ILQNSHVVLFVLPDPNDNNDQVLQTEEQPPIIGDLIYGEDLPLTTEVVLNIRPFCPVQDS 120

Query: 121 NNNNNNAAGSSKKLKVMVKPKCGSQKIPMEVN----ASDNVGE----------------- 173
              NN+ +  S   K ++K   G Q  P+  N     SD+V E                 
Sbjct: 121 PVRNNDQSPPSDAAKDIIK---GHQDSPVRNNEQTPPSDSVKENTNIQDSPVGKIILTLR 180

[Close]

BLAST of MC01g1347.1 vs. TAIR 10
Match: AT4G03370.1 (Ubiquitin family protein )

HSP 1 Score: 94.7 bits (234), Expect = 7.9e-20
Identity = 81/280 (28.93%), Postives = 113/280 (40.36%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           M +  E   G  F+I++G  DTVL  K KI+   RIP+ +QT+ F G +L+D  D+   +
Sbjct: 1   MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWD 60

Query: 61  ILQNSRIKLIVAPSDH-------------------------------------------- 120
           ILQN  + L ++P D+                                            
Sbjct: 61  ILQNPLLHLSISPDDNPTQNQVPQSPSNPIHEFVKNQDSAEDKKNPVLLHQTGKPPLPPK 120

Query: 121 ------NNSSSN-----------------------------NNNNNNNNAAGSSK----- 179
                  N S N                             N +    N   SS      
Sbjct: 121 SSPLTTENFSKNQHDRPVITKMVPELLGPQGTSPVTVGRRRNRDQEVQNRVSSSSDSVKE 180

[Close]

BLAST of MC01g1347.1 vs. TAIR 10
Match: AT4G03360.1 (Ubiquitin family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-18
Identity = 84/276 (30.43%), Postives = 116/276 (42.03%), Query Frame = 0


Query: 3   VIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCEIL 62
           VI E   G  FTI+V F+DTVL IK KI+     P+ KQ LIF   VLQD  ++  C+I 
Sbjct: 4   VIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIR 63

Query: 63  QNSRIKLIVAPSDH---------NNSSSNNNN------NNNNN----------------- 122
            NSRI L ++P D+         N S S  +N      NN ++                 
Sbjct: 64  HNSRILLSISPDDNPTQNQVPQTNQSPSTPSNPIHEFVNNQDSPLSPKSSALTMEKFSKN 123

Query: 123 --------------------------------------AAGS------------------ 178
                                                 A GS                  
Sbjct: 124 QQDRPPLMRVVAKRIDNGSSRPSYSLDELLAPRDSSTVAVGSIRNRDQEVKNRVSSPSDS 183

[Close]

BLAST of MC01g1347.1 vs. TAIR 10
Match: AT4G02950.1 (Ubiquitin family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-17
Identity = 83/278 (29.86%), Postives = 117/278 (42.09%), Query Frame = 0


Query: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60
           + VI E   G  FTI+V F+DTVL IK KI+     P+ KQ LIF   VLQD  ++  C+
Sbjct: 36  ISVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 95

Query: 61  ILQNSRIKLIVAPSDH---------NNSSSNNNN------NNNNN--------------- 120
           I  NSRI L ++P D+         N S S  +N      NN ++               
Sbjct: 96  IRHNSRILLSISPDDNPTQNQVPQTNQSPSTPSNPIHEFVNNQDSPLSPQSSALTMEKFS 155

Query: 121 ----------------------------------------AAGS---------------- 178
                                                   A GS                
Sbjct: 156 KNQQDRPPLMRVVAKRIDNGSSRPSYSLDELLAPRDSSTVAVGSIRNRDQEVKNRESSPS 215

The following BLAST results are available for this feature:

BLAST of MC01g1347.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT95	3.7e-14	28.08	Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9ZQZ6	9.1e-13	28.96	Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q58G87	4.1e-05	28.67	Polyubiquitin 3 OS=Oryza sativa subsp. japonica OX=39947 GN=UBQ3 PE=2 SV=2	[more]
P59669	5.4e-05	29.37	Polyubiquitin OS=Geodia cydonium OX=6047 PE=2 SV=2	[more]
P0CG70	7.0e-05	27.97	Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 ...	[more]

BLAST of MC01g1347.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142282.1	1.71e-112	70.43	actin-related protein 8-like [Momordica charantia]	[more]
XP_008439960.1	2.98e-88	70.20	PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo]	[more]
XP_004134970.1	6.76e-87	67.65	ubiquitin domain-containing protein 7SL RNA1 [Cucumis sativus] >KAE8647664.1 hyp...	[more]
XP_038881479.1	3.43e-86	66.36	ubiquitin domain-containing protein 7SL RNA1-like [Benincasa hispida]	[more]
XP_022950206.1	1.51e-85	60.89	biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]	[more]

BLAST of MC01g1347.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMB8	8.26e-113	70.43	actin-related protein 8-like OS=Momordica charantia OX=3673 GN=LOC111012442 PE=4...	[more]
A0A1S3AZZ9	1.44e-88	70.20	uncharacterized protein LOC103484590 OS=Cucumis melo OX=3656 GN=LOC103484590 PE=...	[more]
A0A6J1GE65	7.33e-86	60.89	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IPZ4	9.01e-84	58.59	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6P4PD81	4.50e-81	63.03	UV excision repair protein rhp23-like isoform X2 OS=Gossypium arboreum OX=29729 ...	[more]

BLAST of MC01g1347.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05230.1	3.8e-54	54.76	Ubiquitin-like superfamily protein	[more]
AT4G05260.1	1.2e-20	30.86	Ubiquitin-like superfamily protein	[more]
AT4G03370.1	7.9e-20	28.93	Ubiquitin family protein	[more]
AT4G03360.1	9.7e-18	30.43	Ubiquitin family protein	[more]
AT4G02950.1	1.3e-17	29.86	Ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..134
None	No IPR available	GENE3D	3.10.20.90		coord: 1..70 e-value: 4.7E-17 score: 63.7
None	No IPR available	GENE3D	3.10.20.90		coord: 72..173 e-value: 1.7E-9 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..96
None	No IPR available	PANTHER	PTHR10621:SF38	UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED	coord: 89..180
None	No IPR available	PANTHER	PTHR10621:SF38	UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED	coord: 1..87
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 1..87 coord: 89..180
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 100..173 e-value: 0.00106338 score: 34.109
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..70 e-value: 1.61619E-11 score: 55.295
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 100..175 e-value: 9.1 score: 5.1 coord: 1..72 e-value: 9.7E-11 score: 51.7
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 106..171 e-value: 1.2E-5 score: 25.0 coord: 9..72 e-value: 1.3E-14 score: 53.7
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..71 score: 15.361754
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 98..179 score: 9.721926
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 80..172
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC01g1347	MC01g1347	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g1347.1-cds	MC01g1347.1-cds-MC01:18128964..18129229	CDS
MC01g1347.1-cds	MC01g1347.1-cds-MC01:18129458..18129734	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC01g1347.1	MC01g1347.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding